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Time Course of Inflammatory Gene Expression Following Crush Injury in Murine Skeletal Muscle.

Voss JG, Shagal AG, Tsuji JM, MacDonald JW, Bammler TK, Farin FM, St Pierre Schneider B.

Nurs Res. 2017 Mar/Apr;66(2):63-74. doi: 10.1097/NNR.0000000000000209.


Using Domestic and Free-Ranging Arctic Canid Models for Environmental Molecular Toxicology Research.

Harley JR, Bammler TK, Farin FM, Beyer RP, Kavanagh TJ, Dunlap KL, Knott KK, Ylitalo GM, O'Hara TM.

Environ Sci Technol. 2016 Feb 16;50(4):1990-9. doi: 10.1021/acs.est.5b04396. Epub 2016 Jan 21.


Differential Gene Expression in Liver, Gill, and Olfactory Rosettes of Coho Salmon (Oncorhynchus kisutch) After Acclimation to Salinity.

Maryoung LA, Lavado R, Bammler TK, Gallagher EP, Stapleton PL, Beyer RP, Farin FM, Hardiman G, Schlenk D.

Mar Biotechnol (NY). 2015 Dec;17(6):703-17. doi: 10.1007/s10126-015-9649-5. Epub 2015 Aug 11.


Choriodecidual Group B Streptococcal Infection Induces miR-155-5p in the Fetal Lung in Macaca nemestrina.

McAdams RM, Bierle CJ, Boldenow E, Weed S, Tsai J, Beyer RP, MacDonald JW, Bammler TK, Liggitt HD, Farin FM, Vanderhoeven J, Rajagopal L, Adams Waldorf KM.

Infect Immun. 2015 Oct;83(10):3909-17. doi: 10.1128/IAI.00695-15. Epub 2015 Jul 20.


Transcriptional analysis of human cranial compartments with different embryonic origins.

Homayounfar N, Park SS, Afsharinejad Z, Bammler TK, MacDonald JW, Farin FM, Mecham BH, Cunningham ML.

Arch Oral Biol. 2015 Sep;60(9):1450-60. doi: 10.1016/j.archoralbio.2015.06.008. Epub 2015 Jul 2.


Effect of Traumatic Brain Injury, Erythropoietin, and Anakinra on Hepatic Metabolizing Enzymes and Transporters in an Experimental Rat Model.

Anderson GD, Peterson TC, Vonder Haar C, Farin FM, Bammler TK, MacDonald JW, Kantor ED, Hoane MR.

AAPS J. 2015 Sep;17(5):1255-67. doi: 10.1208/s12248-015-9792-y. Epub 2015 Jun 12.


p53 Contributes to Differentiating Gene Expression Following Exposure to Acetaminophen and Its Less Hepatotoxic Regioisomer Both In Vitro and In Vivo.

Stamper BD, Garcia ML, Nguyen DQ, Beyer RP, Bammler TK, Farin FM, Kavanagh TJ, Nelson SD.

Gene Regul Syst Bio. 2015 Jun 1;9:1-14. doi: 10.4137/GRSB.S25388. eCollection 2015.


Variation in genes controlling warfarin disposition and response in American Indian and Alaska Native people: CYP2C9, VKORC1, CYP4F2, CYP4F11, GGCX.

Fohner AE, Robinson R, Yracheta J, Dillard DA, Schilling B, Khan B, Hopkins S, Boyer B, Black J, Wiener H, Tiwari HK, Gordon A, Nickerson D, Tsai JM, Farin FM, Thornton TA, Rettie AE, Thummel KE.

Pharmacogenet Genomics. 2015 Jul;25(7):343-353. doi: 10.1097/FPC.0000000000000143.


Dose-dependent effects of morphine exposure on mRNA and microRNA (miR) expression in hippocampus of stressed neonatal mice.

McAdams RM, McPherson RJ, Beyer RP, Bammler TK, Farin FM, Juul SE.

PLoS One. 2015 Apr 6;10(4):e0123047. doi: 10.1371/journal.pone.0123047. eCollection 2015.


Infant sex-specific placental cadmium and DNA methylation associations.

Mohanty AF, Farin FM, Bammler TK, MacDonald JW, Afsharinejad Z, Burbacher TM, Siscovick DS, Williams MA, Enquobahrie DA.

Environ Res. 2015 Apr;138:74-81. doi: 10.1016/j.envres.2015.02.004. Epub 2015 Feb 18.


Inducible nitric oxide synthase gene methylation and parkinsonism in manganese-exposed welders.

Searles Nielsen S, Checkoway H, Criswell SR, Farin FM, Stapleton PL, Sheppard L, Racette BA.

Parkinsonism Relat Disord. 2015 Apr;21(4):355-60. doi: 10.1016/j.parkreldis.2015.01.007. Epub 2015 Jan 17.


Blood α-synuclein in agricultural pesticide handlers in central Washington State.

Searles Nielsen S, Checkoway H, Zhang J, Hofmann JN, Keifer MC, Paulsen M, Farin FM, Cook TJ, Simpson CD.

Environ Res. 2015 Jan;136:75-81. doi: 10.1016/j.envres.2014.10.014. Epub 2014 Nov 20.


Lack of replication of the GRIN2A-by-coffee interaction in Parkinson disease.

Ahmed I, Lee PC, Lill CM, Searles Nielsen S, Artaud F, Gallagher LG, Loriot MA, Mulot C, Nacfer M, Liu T, Biernacka JM, Armasu S, Anderson K, Farin FM, Lassen CF, Hansen J, Olsen JH, Bertram L, Maraganore DM, Checkoway H, Ritz B, Elbaz A.

PLoS Genet. 2014 Nov 20;10(11):e1004788. doi: 10.1371/journal.pgen.1004788. eCollection 2014 Nov. No abstract available.


A Combination Therapy of Nicotinamide and Progesterone Improves Functional Recovery following Traumatic Brain Injury.

Peterson TC, Hoane MR, McConomy KS, Farin FM, Bammler TK, MacDonald JW, Kantor ED, Anderson GD.

J Neurotrauma. 2015 Jun 1;32(11):765-79. doi: 10.1089/neu.2014.3530. Epub 2015 Feb 26.


Genetic polymorphisms affecting susceptibility to mercury neurotoxicity in children: summary findings from the Casa Pia Children's Amalgam clinical trial.

Woods JS, Heyer NJ, Russo JE, Martin MD, Farin FM.

Neurotoxicology. 2014 Sep;44:288-302. doi: 10.1016/j.neuro.2014.07.010. Epub 2014 Aug 7.


Repeated gestational exposure of mice to chlorpyrifos oxon is associated with paraoxonase 1 (PON1) modulated effects in maternal and fetal tissues.

Cole TB, Li WF, Co AL, Hay AM, MacDonald JW, Bammler TK, Farin FM, Costa LG, Furlong CE.

Toxicol Sci. 2014 Oct;141(2):409-22. doi: 10.1093/toxsci/kfu144. Epub 2014 Jul 28.


Chronic low-level domoic acid exposure alters gene transcription and impairs mitochondrial function in the CNS.

Hiolski EM, Kendrick PS, Frame ER, Myers MS, Bammler TK, Beyer RP, Farin FM, Wilkerson HW, Smith DR, Marcinek DJ, Lefebvre KA.

Aquat Toxicol. 2014 Oct;155:151-9. doi: 10.1016/j.aquatox.2014.06.006. Epub 2014 Jun 20.


Group B streptococcal infection of the choriodecidua induces dysfunction of the cytokeratin network in amniotic epithelium: a pathway to membrane weakening.

Vanderhoeven JP, Bierle CJ, Kapur RP, McAdams RM, Beyer RP, Bammler TK, Farin FM, Bansal A, Spencer M, Deng M, Gravett MG, Rubens CE, Rajagopal L, Adams Waldorf KM.

PLoS Pathog. 2014 Mar 6;10(3):e1003920. doi: 10.1371/journal.ppat.1003920. eCollection 2014 Mar.


Genetic polymorphisms of catechol-O-methyltransferase modify the neurobehavioral effects of mercury in children.

Woods JS, Heyer NJ, Russo JE, Martin MD, Pillai PB, Bammler TK, Farin FM.

J Toxicol Environ Health A. 2014;77(6):293-312. doi: 10.1080/15287394.2014.867210.


Genetic risk factors for major bleeding in patients treated with warfarin in a community setting.

Roth JA, Boudreau D, Fujii MM, Farin FM, Rettie AE, Thummel KE, Veenstra DL.

Clin Pharmacol Ther. 2014 Jun;95(6):636-43. doi: 10.1038/clpt.2014.26. Epub 2014 Feb 6.


Exercise training in transgenic mice is associated with attenuation of early breast cancer growth in a dose-dependent manner.

Goh J, Tsai J, Bammler TK, Farin FM, Endicott E, Ladiges WC.

PLoS One. 2013 Nov 27;8(11):e80123. doi: 10.1371/journal.pone.0080123. eCollection 2013.


Comparison of the effect of minocycline and simvastatin on functional recovery and gene expression in a rat traumatic brain injury model.

Vonder Haar C, Anderson GD, Elmore BE, Moore LH, Wright AM, Kantor ED, Farin FM, Bammler TK, MacDonald JW, Hoane MR.

J Neurotrauma. 2014 May 15;31(10):961-75. doi: 10.1089/neu.2013.3119. Epub 2014 Jan 20.


Parental smoking and risk of childhood brain tumors by functional polymorphisms in polycyclic aromatic hydrocarbon metabolism genes.

Barrington-Trimis JL, Searles Nielsen S, Preston-Martin S, Gauderman WJ, Holly EA, Farin FM, Mueller BA, McKean-Cowdin R.

PLoS One. 2013 Nov 18;8(11):e79110. doi: 10.1371/journal.pone.0079110. eCollection 2013.


Association mapping of the PARK10 region for Parkinson's disease susceptibility genes.

Wan JY, Edwards KL, Hutter CM, Mata IF, Samii A, Roberts JW, Agarwal P, Checkoway H, Farin FM, Yearout D, Zabetian CP.

Parkinsonism Relat Disord. 2014 Jan;20(1):93-8. doi: 10.1016/j.parkreldis.2013.10.001. Epub 2013 Oct 11.


Comparison of the effects of erythropoietin and anakinra on functional recovery and gene expression in a traumatic brain injury model.

Anderson GD, Peterson TC, Vonder Haar C, Kantor ED, Farin FM, Bammler TK, Macdonald JW, Hoane MR.

Front Pharmacol. 2013 Oct 17;4:129. doi: 10.3389/fphar.2013.00129. eCollection 2013.


Modification of neurobehavioral effects of mercury by genetic polymorphisms of metallothionein in children.

Woods JS, Heyer NJ, Russo JE, Martin MD, Pillai PB, Farin FM.

Neurotoxicol Teratol. 2013 Sep-Oct;39:36-44. doi: 10.1016/ Epub 2013 Jul 1.


The glutathione synthesis gene Gclm modulates amphiphilic polymer-coated CdSe/ZnS quantum dot-induced lung inflammation in mice.

McConnachie LA, Botta D, White CC, Weldy CS, Wilkerson HW, Yu J, Dills R, Yu X, Griffith WC, Faustman EM, Farin FM, Gill SE, Parks WC, Hu X, Gao X, Eaton DL, Kavanagh TJ.

PLoS One. 2013 May 27;8(5):e64165. doi: 10.1371/journal.pone.0064165. Print 2013.


Genotype and age at Parkinson disease diagnosis.

Searles Nielsen S, Bammler TK, Gallagher LG, Farin FM, Longstreth W Jr, Franklin GM, Swanson PD, Checkoway H.

Int J Mol Epidemiol Genet. 2013;4(1):61-9. Epub 2013 Mar 18.


The effect of nicotinamide on gene expression in a traumatic brain injury model.

Anderson GD, Peterson TC, Farin FM, Bammler TK, Beyer RP, Kantor ED, Hoane MR.

Front Neurosci. 2013 Feb 26;7:21. doi: 10.3389/fnins.2013.00021. eCollection 2013.


Mild passive focal cooling prevents epileptic seizures after head injury in rats.

D'Ambrosio R, Eastman CL, Darvas F, Fender JS, Verley DR, Farin FM, Wilkerson HW, Temkin NR, Miller JW, Ojemann J, Rothman SM, Smyth MD.

Ann Neurol. 2013 Feb;73(2):199-209. doi: 10.1002/ana.23764. Epub 2012 Dec 7.


Gestational age-dependent changes in gene expression of metabolic enzymes and transporters in pregnant mice.

Shuster DL, Bammler TK, Beyer RP, Macdonald JW, Tsai JM, Farin FM, Hebert MF, Thummel KE, Mao Q.

Drug Metab Dispos. 2013 Feb;41(2):332-42. doi: 10.1124/dmd.112.049718. Epub 2012 Nov 21. Erratum in: Drug Metab Dispos. 2013 Mar;41(3):682.


Common variation in the LRRK2 gene is a risk factor for Parkinson's disease.

Mata IF, Checkoway H, Hutter CM, Samii A, Roberts JW, Kim HM, Agarwal P, Alvarez V, Ribacoba R, Pastor P, Lorenzo-Betancor O, Infante J, Sierra M, Gómez-Garre P, Mir P, Ritz B, Rhodes SL, Colcher A, Van Deerlin V, Chung KA, Quinn JF, Yearout D, Martinez E, Farin FM, Wan JY, Edwards KL, Zabetian CP.

Mov Disord. 2012 Dec;27(14):1822-5. doi: 10.1002/mds.25226. Epub 2012 Oct 31.


Transcriptome correlation analysis identifies two unique craniosynostosis subtypes associated with IRS1 activation.

Stamper BD, Mecham B, Park SS, Wilkerson H, Farin FM, Beyer RP, Bammler TK, Mangravite LM, Cunningham ML.

Physiol Genomics. 2012 Dec 1;44(23):1154-63. doi: 10.1152/physiolgenomics.00085.2012. Epub 2012 Oct 16.


Choriodecidual infection downregulates angiogenesis and morphogenesis pathways in fetal lungs from Macaca nemestrina.

McAdams RM, Vanderhoeven J, Beyer RP, Bammler TK, Farin FM, Liggitt HD, Kapur RP, Gravett MG, Rubens CE, Adams Waldorf KM.

PLoS One. 2012;7(10):e46863. doi: 10.1371/journal.pone.0046863. Epub 2012 Oct 9. Erratum in: PLoS One. 2013;8(2). doi: 10.1371/annotation/2832117a-0601-4416-a256-c7e64c541a0b.


Coagulation factor X activates innate immunity to human species C adenovirus.

Doronin K, Flatt JW, Di Paolo NC, Khare R, Kalyuzhniy O, Acchione M, Sumida JP, Ohto U, Shimizu T, Akashi-Takamura S, Miyake K, MacDonald JW, Bammler TK, Beyer RP, Farin FM, Stewart PL, Shayakhmetov DM.

Science. 2012 Nov 9;338(6108):795-8. doi: 10.1126/science.1226625. Epub 2012 Sep 27.


Modification of neurobehavioral effects of mercury by a genetic polymorphism of coproporphyrinogen oxidase in children.

Woods JS, Heyer NJ, Echeverria D, Russo JE, Martin MD, Bernardo MF, Luis HS, Vaz L, Farin FM.

Neurotoxicol Teratol. 2012 Sep-Oct;34(5):513-21. doi: 10.1016/ Epub 2012 Jul 2.


A pilot study of the association between genetic polymorphisms involved in estrogen signaling and infant male genital phenotypes.

Sathyanarayana S, Swan SH, Farin FM, Wilkerson HW, Bamshad M, Grady R, Zhou C, Schwartz SM.

Asian J Androl. 2012 Sep;14(5):766-72. doi: 10.1038/aja.2012.27. Epub 2012 May 14.


A novel antibody-based biomarker for chronic algal toxin exposure and sub-acute neurotoxicity.

Lefebvre KA, Frame ER, Gulland F, Hansen JD, Kendrick PS, Beyer RP, Bammler TK, Farin FM, Hiolski EM, Smith DR, Marcinek DJ.

PLoS One. 2012;7(5):e36213. doi: 10.1371/journal.pone.0036213. Epub 2012 May 2.


Seasonal changes in patterns of gene expression in avian song control brain regions.

Thompson CK, Meitzen J, Replogle K, Drnevich J, Lent KL, Wissman AM, Farin FM, Bammler TK, Beyer RP, Clayton DF, Perkel DJ, Brenowitz EA.

PLoS One. 2012;7(4):e35119. doi: 10.1371/journal.pone.0035119. Epub 2012 Apr 18.


Is ethnicity associated with morphine's side effects in children? Morphine pharmacokinetics, analgesic response, and side effects in children having tonsillectomy.

Jimenez N, Anderson GD, Shen DD, Nielsen SS, Farin FM, Seidel K, Lynn AM.

Paediatr Anaesth. 2012 Jul;22(7):669-75. doi: 10.1111/j.1460-9592.2012.03844.x. Epub 2012 Apr 4.


LINE-1 DNA methylation, smoking and risk of Parkinson's disease.

Searles Nielsen S, Checkoway H, Butler RA, Nelson HH, Farin FM, Longstreth WT Jr, Franklin GM, Swanson PD, Kelsey KT.

J Parkinsons Dis. 2012;2(4):303-8. doi: 10.3233/JPD-012129.


Differential expression of extracellular matrix-mediated pathways in single-suture craniosynostosis.

Stamper BD, Park SS, Beyer RP, Bammler TK, Farin FM, Mecham B, Cunningham ML.

PLoS One. 2011;6(10):e26557. doi: 10.1371/journal.pone.0026557. Epub 2011 Oct 19.


Childhood brain tumors and maternal cured meat consumption in pregnancy: differential effect by glutathione S-transferases.

Searles Nielsen S, Mueller BA, Preston-Martin S, Farin FM, Holly EA, McKean-Cowdin R.

Cancer Epidemiol Biomarkers Prev. 2011 Nov;20(11):2413-9. doi: 10.1158/1055-9965.EPI-11-0196. Epub 2011 Sep 13.


The effect of progesterone dose on gene expression after traumatic brain injury.

Anderson GD, Farin FM, Bammler TK, Beyer RP, Swan AA, Wilkerson HW, Kantor ED, Hoane MR.

J Neurotrauma. 2011 Sep;28(9):1827-43. doi: 10.1089/neu.2011.1911. Epub 2011 Sep 8.


Repeated developmental exposure of mice to chlorpyrifos oxon is associated with paraoxonase 1 (PON1)-modulated effects on cerebellar gene expression.

Cole TB, Beyer RP, Bammler TK, Park SS, Farin FM, Costa LG, Furlong CE.

Toxicol Sci. 2011 Sep;123(1):155-69. doi: 10.1093/toxsci/kfr157. Epub 2011 Jun 14.


Effects of neonatal stress and morphine on murine hippocampal gene expression.

Juul SE, Beyer RP, Bammler TK, Farin FM, Gleason CA.

Pediatr Res. 2011 Apr;69(4):285-92. doi: 10.1203/PDR.0b013e31820bd165.


Transcription Factor CHF1/Hey2 Regulates Specific Pathways in Serum Stimulated Primary Cardiac Myocytes: Implications for Cardiac Hypertrophy.

Yu M, Xiang F, Beyer RP, Farin FM, Bammler TK, Chin MT.

Curr Genomics. 2010 Jun;11(4):287-96. doi: 10.2174/138920210791233117.


The association between serotonin transporter gene promotor polymorphism (5-HTTLPR) and elemental mercury exposure on mood and behavior in humans.

Echeverria D, Woods JS, Heyer NJ, Martin MD, Rohlman DS, Farin FM, Li T.

J Toxicol Environ Health A. 2010;73(15):1003-20. doi: 10.1080/15287390903566591.


Differential regulation of mitogen-activated protein kinase pathways by acetaminophen and its nonhepatotoxic regioisomer 3'-hydroxyacetanilide in TAMH cells.

Stamper BD, Bammler TK, Beyer RP, Farin FM, Nelson SD.

Toxicol Sci. 2010 Jul;116(1):164-73. doi: 10.1093/toxsci/kfq100. Epub 2010 Apr 2.


Biomarkers of sensitivity and exposure in Washington state pesticide handlers.

Hofmann JN, Keifer MC, Checkoway H, De Roos AJ, Farin FM, Fenske RA, Richter RJ, van Belle G, Furlong CE.

Adv Exp Med Biol. 2010;660:19-27. doi: 10.1007/978-1-60761-350-3_3.

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