Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 56

1.

Genomic and epidemiological monitoring of yellow fever virus transmission potential.

Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG.

Science. 2018 Aug 31;361(6405):894-899. doi: 10.1126/science.aat7115. Epub 2018 Aug 23.

PMID:
30139911
2.

Opsoclonus-myoclonus-ataxia syndrome associated with chikungunya and dengue virus co-infection.

do Rosário MS, Giovanetti M, de Jesus PAP, Farias DS, Faria NR, de Lima CPS, da Silva SP, Nunes MR, Alcantara LCJ, de Siqueira IC.

Int J Infect Dis. 2018 Aug 1;75:11-14. doi: 10.1016/j.ijid.2018.07.019. [Epub ahead of print]

3.

30 years of dengue fatal cases in Brazil: a laboratorial-based investigation of 1047 cases.

Nunes PCG, de Filippis AMB, Lima MQDR, Faria NRDC, de Bruycker-Nogueira F, Santos JB, Heringer M, Chouin-Carneiro T, Couto-Lima D, de Santis Gonçalves B, Sampaio SA, de Araújo ESM, Sánchez-Arcila JC, Dos Santos FB, Nogueira RMR.

BMC Infect Dis. 2018 Jul 27;18(1):346. doi: 10.1186/s12879-018-3255-x.

4.

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P.

Nat Commun. 2018 Jun 8;9(1):2222. doi: 10.1038/s41467-018-03763-2.

5.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

6.

Challenges in dengue research: A computational perspective.

Lourenço J, Tennant W, Faria NR, Walker A, Gupta S, Recker M.

Evol Appl. 2017 Nov 5;11(4):516-533. doi: 10.1111/eva.12554. eCollection 2018 Apr. Review.

7.

Genomic Insights into Zika Virus Emergence and Spread.

Grubaugh ND, Faria NR, Andersen KG, Pybus OG.

Cell. 2018 Mar 8;172(6):1160-1162. doi: 10.1016/j.cell.2018.02.027.

PMID:
29522736
8.

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.

Vasylyeva TI, Liulchuk M, Friedman SR, Sazonova I, Faria NR, Katzourakis A, Babii N, Scherbinska A, Thézé J, Pybus OG, Smyrnov P, Mbisa JL, Paraskevis D, Hatzakis A, Magiorkinis G.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1051-1056. doi: 10.1073/pnas.1701447115. Epub 2018 Jan 16.

9.

Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil.

Faria NR, da Costa AC, Lourenço J, Loureiro P, Lopes ME, Ribeiro R, Alencar CS, Kraemer MUG, Villabona-Arenas CJ, Wu CH, Thézé J, Khan K, Brent SE, Romano C, Delwart E, Custer B, Busch MP, Pybus OG, Sabino EC; NHLBI Recipient Epidemiology and Donor Evaluation Study-III (REDS-III).

Sci Rep. 2017 Nov 9;7(1):15216. doi: 10.1038/s41598-017-15152-8.

10.

Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil.

Charlys da Costa A, Thézé J, Komninakis SCV, Sanz-Duro RL, Felinto MRL, Moura LCC, Barroso IMO, Santos LEC, Nunes MAL, Moura AA, Lourenço J, Deng X, Delwart EL, Guimarães MRDAS, Pybus OG, Sabino EC, Faria NR.

Emerg Infect Dis. 2017 Oct;23(10):1742-1744. doi: 10.3201/eid2310.170307.

11.

Epidemiological and ecological determinants of Zika virus transmission in an urban setting.

Lourenço J, Maia de Lima M, Faria NR, Walker A, Kraemer MU, Villabona-Arenas CJ, Lambert B, Marques de Cerqueira E, Pybus OG, Alcantara LC, Recker M.

Elife. 2017 Sep 9;6. pii: e29820. doi: 10.7554/eLife.29820.

12.

A10 The evolution and molecular epidemiology of epidemic GII.17 noroviruses.

Lu J, Fang L, Zheng H, Lao J, Yang F, Sun L, Xiao J, Lin J, Song T, Raghwani J, Ke C, Faria NR, Bowden TA, Pybus OG, Li H.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.009. doi: 10.1093/ve/vew036.009. eCollection 2017 Mar. No abstract available.

13.

Increasing airline travel may facilitate co-circulation of multiple dengue virus serotypes in Asia.

Tian H, Sun Z, Faria NR, Yang J, Cazelles B, Huang S, Xu B, Yang Q, Pybus OG, Xu B.

PLoS Negl Trop Dis. 2017 Aug 3;11(8):e0005694. doi: 10.1371/journal.pntd.0005694. eCollection 2017 Aug.

14.

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.

Arias A, Watson SJ, Asogun D, Tobin EA, Lu J, Phan MVT, Jah U, Wadoum REG, Meredith L, Thorne L, Caddy S, Tarawalie A, Langat P, Dudas G, Faria NR, Dellicour S, Kamara A, Kargbo B, Kamara BO, Gevao S, Cooper D, Newport M, Horby P, Dunning J, Sahr F, Brooks T, Simpson AJH, Groppelli E, Liu G, Mulakken N, Rhodes K, Akpablie J, Yoti Z, Lamunu M, Vitto E, Otim P, Owilli C, Boateng I, Okoror L, Omomoh E, Oyakhilome J, Omiunu R, Yemisis I, Adomeh D, Ehikhiametalor S, Akhilomen P, Aire C, Kurth A, Cook N, Baumann J, Gabriel M, Wölfel R, Di Caro A, Carroll MW, Günther S, Redd J, Naidoo D, Pybus OG, Rambaut A, Kellam P, Goodfellow I, Cotten M.

Virus Evol. 2016 Jun 22;2(1):vew016. doi: 10.1093/ve/vew016. eCollection 2016 Jan.

15.

Using Viral Gene Sequences to Compare and Explain the Heterogeneous Spatial Dynamics of Virus Epidemics.

Dellicour S, Rose R, Faria NR, Vieira LFP, Bourhy H, Gilbert M, Lemey P, Pybus OG.

Mol Biol Evol. 2017 Oct 1;34(10):2563-2571. doi: 10.1093/molbev/msx176.

PMID:
28651357
16.

Dengue type 4 in Rio de Janeiro, Brazil: case characterization following its introduction in an endemic region.

Heringer M, Souza TMA, Lima MDRQ, Nunes PCG, Faria NRDC, de Bruycker-Nogueira F, Chouin-Carneiro T, Nogueira RMR, Dos Santos FB.

BMC Infect Dis. 2017 Jun 9;17(1):410. doi: 10.1186/s12879-017-2488-4.

17.

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ.

Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24.

18.

Establishment and cryptic transmission of Zika virus in Brazil and the Americas.

Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET Jr, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG.

Nature. 2017 Jun 15;546(7658):406-410. doi: 10.1038/nature22401. Epub 2017 May 24.

19.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24.

20.

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A.

Nature. 2017 Apr 20;544(7650):309-315. doi: 10.1038/nature22040. Epub 2017 Apr 12.

21.

First Report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil.

Souza TM, Azeredo EL, Badolato-Corrêa J, Damasco PV, Santos C, Petitinga-Paiva F, Nunes PC, Barbosa LS, Cipitelli MC, Chouin-Carneiro T, Faria NR, Nogueira RM, de Bruycker-Nogueira F, Dos Santos FB.

PLoS Curr. 2017 Feb 14;9. pii: ecurrents.outbreaks.4200119978d62ccaa454599cd2735727. doi: 10.1371/currents.outbreaks.4200119978d62ccaa454599cd2735727.

22.

Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study.

Kraemer MUG, Faria NR, Reiner RC Jr, Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S.

Lancet Infect Dis. 2017 Mar;17(3):330-338. doi: 10.1016/S1473-3099(16)30513-8. Epub 2016 Dec 23.

23.

Effect of Live Poultry Market Interventions on Influenza A(H7N9) Virus, Guangdong, China.

Wu J, Lu J, Faria NR, Zeng X, Song Y, Zou L, Yi L, Liang L, Ni H, Kang M, Zhang X, Huang G, Zhong H, Bowden TA, Raghwani J, He J, He X, Lin J, Koopmans M, Pybus OG, Ke C.

Emerg Infect Dis. 2016 Dec;22(12):2104-2112. doi: 10.3201/eid2212.160450.

24.

Mobile real-time surveillance of Zika virus in Brazil.

Faria NR, Sabino EC, Nunes MR, Alcantara LC, Loman NJ, Pybus OG.

Genome Med. 2016 Sep 29;8(1):97.

25.

HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer.

Rose R, Lamers SL, Nolan DJ, Maidji E, Faria NR, Pybus OG, Dollar JJ, Maruniak SA, McAvoy AC, Salemi M, Stoddart CA, Singer EJ, McGrath MS.

J Virol. 2016 Sep 29;90(20):8984-93. doi: 10.1128/JVI.00684-16. Print 2016 Oct 15.

26.

Distinct Zika Virus Lineage in Salvador, Bahia, Brazil.

Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY.

Emerg Infect Dis. 2016 Oct;22(10):1788-92. doi: 10.3201/eid2210.160663. Epub 2016 Oct 15.

27.

The Evolution and Transmission of Epidemic GII.17 Noroviruses.

Lu J, Fang L, Zheng H, Lao J, Yang F, Sun L, Xiao J, Lin J, Song T, Ni T, Raghwani J, Ke C, Faria NR, Bowden TA, Pybus OG, Li H.

J Infect Dis. 2016 Aug 15;214(4):556-64. doi: 10.1093/infdis/jiw208. Epub 2016 May 24.

28.

SERAPHIM: studying environmental rasters and phylogenetically informed movements.

Dellicour S, Rose R, Faria NR, Lemey P, Pybus OG.

Bioinformatics. 2016 Oct 15;32(20):3204-3206. Epub 2016 Jun 22.

PMID:
27334476
29.

Phylodynamics of influenza A(H3N2) in South America, 1999-2012.

Born PS, Siqueira MM, Faria NR, Resende PC, Motta FC, Bello G.

Infect Genet Evol. 2016 Sep;43:312-20. doi: 10.1016/j.meegid.2016.06.012. Epub 2016 Jun 6.

PMID:
27275847
30.

Zika virus complete genome from Salvador, Bahia, Brazil.

Giovanetti M, Faria NR, Nunes MRT, de Vasconcelos JM, Lourenço J, Rodrigues SG, Vianez JL Jr, da Silva SP, Lemos PS, Tavares FN, Martin DP, do Rosário MS, Siqueira IC, Ciccozzi M, Pybus OG, de Oliveira T, Alcantara LC Junior.

Infect Genet Evol. 2016 Jul;41:142-145. doi: 10.1016/j.meegid.2016.03.030. Epub 2016 Apr 9.

PMID:
27071531
31.

Zika virus in the Americas: Early epidemiological and genetic findings.

Faria NR, Azevedo RDSDS, Kraemer MUG, Souza R, Cunha MS, Hill SC, Thézé J, Bonsall MB, Bowden TA, Rissanen I, Rocco IM, Nogueira JS, Maeda AY, Vasami FGDS, Macedo FLL, Suzuki A, Rodrigues SG, Cruz ACR, Nunes BT, Medeiros DBA, Rodrigues DSG, Queiroz ALN, da Silva EVP, Henriques DF, da Rosa EST, de Oliveira CS, Martins LC, Vasconcelos HB, Casseb LMN, Simith DB, Messina JP, Abade L, Lourenço J, Alcantara LCJ, de Lima MM, Giovanetti M, Hay SI, de Oliveira RS, Lemos PDS, de Oliveira LF, de Lima CPS, da Silva SP, de Vasconcelos JM, Franco L, Cardoso JF, Vianez-Júnior JLDSG, Mir D, Bello G, Delatorre E, Khan K, Creatore M, Coelho GE, de Oliveira WK, Tesh R, Pybus OG, Nunes MRT, Vasconcelos PFC.

Science. 2016 Apr 15;352(6283):345-349. doi: 10.1126/science.aaf5036. Epub 2016 Mar 24.

32.

Dengue epidemics in two distinct periods reveal distinct epidemiological, laboratorial and clinical aspects in a same scenario: analysis of the 2010 and 2013 epidemics in Mato Grosso do Sul, Brazil.

Faria NR, Solorzano VE, Nogueira RM, Chouin-Carneiro T, Nunes PC, Simões JB, de Bruycker Nogueira F, Lima Mda R, de Oliveira Pinto LM, Kubelka CF, da Cunha RV, de Azeredo EL, dos Santos FB.

Trans R Soc Trop Med Hyg. 2016 Apr;110(4):228-36. doi: 10.1093/trstmh/trw013. Epub 2016 Mar 7.

PMID:
26956779
33.

Insights of the genetic diversity of DENV-1 detected in Brazil in 25 years: Analysis of the envelope domain III allows lineages characterization.

de Bruycker-Nogueira F, Nogueira RM, Faria NR, Simões JB, Nunes PC, de Filippis AM, dos Santos FB.

Infect Genet Evol. 2015 Aug;34:126-36. doi: 10.1016/j.meegid.2015.07.007. Epub 2015 Jul 6.

PMID:
26160541
34.

Emergence and potential for spread of Chikungunya virus in Brazil.

Nunes MR, Faria NR, de Vasconcelos JM, Golding N, Kraemer MU, de Oliveira LF, Azevedo Rdo S, da Silva DE, da Silva EV, da Silva SP, Carvalho VL, Coelho GE, Cruz AC, Rodrigues SG, Vianez JL Jr, Nunes BT, Cardoso JF, Tesh RB, Hay SI, Pybus OG, Vasconcelos PF.

BMC Med. 2015 Apr 30;13:102. doi: 10.1186/s12916-015-0348-x.

35.

An integrated map of HIV genome-wide variation from a population perspective.

Li G, Piampongsant S, Faria NR, Voet A, Pineda-Peña AC, Khouri R, Lemey P, Vandamme AM, Theys K.

Retrovirology. 2015 Feb 15;12:18. doi: 10.1186/s12977-015-0148-6.

36.

Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.

von Stockenstrom S, Odevall L, Lee E, Sinclair E, Bacchetti P, Killian M, Epling L, Shao W, Hoh R, Ho T, Faria NR, Lemey P, Albert J, Hunt P, Loeb L, Pilcher C, Poole L, Hatano H, Somsouk M, Douek D, Boritz E, Deeks SG, Hecht FM, Palmer S.

J Infect Dis. 2015 Aug 15;212(4):596-607. doi: 10.1093/infdis/jiv092. Epub 2015 Feb 23.

37.

Impact of the emergence and re-emergence of different dengue viruses' serotypes in Rio de Janeiro, Brazil, 2010 to 2012.

Heringer M, Nogueira RM, de Filippis AM, Lima MR, Faria NR, Nunes PC, Nogueira FB, dos Santos FB.

Trans R Soc Trop Med Hyg. 2015 Apr;109(4):268-74. doi: 10.1093/trstmh/trv006. Epub 2015 Jan 28.

PMID:
25634640
38.

Epidemiological history and genomic characterization of non-D1 HBV strains identified in Iran.

Pineda-Peña AC, Faria NR, Mina T, Amini-Bavil-Olyaee S, Alavian SM, Lemey P, Maes P, Van Ranst M, Pourkarim MR.

J Clin Virol. 2015 Feb;63:38-41. doi: 10.1016/j.jcv.2014.12.010. Epub 2014 Dec 17. Erratum in: J Clin Virol. 2015 Aug;69:254.

PMID:
25600602
39.

HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations.

Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P.

Science. 2014 Oct 3;346(6205):56-61. doi: 10.1126/science.1256739. Epub 2014 Oct 2.

40.

Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil.

Nunes MR, Palacios G, Faria NR, Sousa EC Jr, Pantoja JA, Rodrigues SG, Carvalho VL, Medeiros DB, Savji N, Baele G, Suchard MA, Lemey P, Vasconcelos PF, Lipkin WI.

PLoS Negl Trop Dis. 2014 Apr 17;8(4):e2769. doi: 10.1371/journal.pntd.0002769. eCollection 2014 Apr.

41.

The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.

Josefsson L, von Stockenstrom S, Faria NR, Sinclair E, Bacchetti P, Killian M, Epling L, Tan A, Ho T, Lemey P, Shao W, Hunt PW, Somsouk M, Wylie W, Douek DC, Loeb L, Custer J, Hoh R, Poole L, Deeks SG, Hecht F, Palmer S.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):E4987-96. doi: 10.1073/pnas.1308313110. Epub 2013 Nov 25.

42.

HIV Type 1 transmission networks among men having sex with men and heterosexuals in Kenya.

Bezemer D, Faria NR, Hassan A, Hamers RL, Mutua G, Anzala O, Mandaliya K, Cane P, Berkley JA, Rinke de Wit TF, Wallis C, Graham SM, Price MA, Coutinho RA, Sanders EJ.

AIDS Res Hum Retroviruses. 2014 Feb;30(2):118-26. doi: 10.1089/AID.2013.0171. Epub 2013 Sep 17.

43.

Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule.

Josefsson L, Palmer S, Faria NR, Lemey P, Casazza J, Ambrozak D, Kearney M, Shao W, Kottilil S, Sneller M, Mellors J, Coffin JM, Maldarelli F.

PLoS Pathog. 2013;9(6):e1003432. doi: 10.1371/journal.ppat.1003432. Epub 2013 Jun 20.

44.

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM.

Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7.

45.

Twenty years of DENV-2 activity in Brazil: molecular characterization and phylogeny of strains isolated from 1990 to 2010.

Faria NR, Nogueira RM, de Filippis AM, Simões JB, Nogueira Fde B, da Rocha Queiroz Lima M, dos Santos FB.

PLoS Negl Trop Dis. 2013;7(3):e2095. doi: 10.1371/journal.pntd.0002095. Epub 2013 Mar 14.

46.

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints.

Faria NR, Suchard MA, Rambaut A, Streicker DG, Lemey P.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120196. doi: 10.1098/rstb.2012.0196. Print 2013 Mar 19.

47.

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci.

Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA.

Mol Biol Evol. 2013 Mar;30(3):713-24. doi: 10.1093/molbev/mss265. Epub 2012 Nov 22.

48.

Dengue virus type 4 in Niterói, Rio de Janeiro: the role of molecular techniques in laboratory diagnosis and entomological surveillance.

Castro MG, Nogueira RM, Filippis AM, Ferreira AA, Lima Mda R, Faria NR, Nogueira Fde B, Simões JB, Nunes PC, Sampaio SA, Lourenço-de-Oliveira R, Santos FB.

Mem Inst Oswaldo Cruz. 2012 Nov;107(7):940-5.

49.

Phylogeography of dengue virus serotype 4, Brazil, 2010-2011.

Nunes MR, Faria NR, Vasconcelos HB, Medeiros DB, Silva de Lima CP, Carvalho VL, Pinto da Silva EV, Cardoso JF, Sousa EC Jr, Nunes KN, Rodrigues SG, Abecasis AB, Suchard MA, Lemey P, Vasconcelos PF.

Emerg Infect Dis. 2012 Nov;18(11):1858-64. doi: 10.3201/eid1811.120217.

50.

Phylogeography of foot-and-mouth disease virus serotype O in Ecuador.

de Carvalho LM, Santos LB, Faria NR, de Castro Silveira W.

Infect Genet Evol. 2013 Jan;13:76-88. doi: 10.1016/j.meegid.2012.08.016. Epub 2012 Sep 15.

PMID:
22985683

Supplemental Content

Loading ...
Support Center