Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 79

1.

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region.

Giovanetti M, Faria NR, Lourenço J, Goes de Jesus J, Xavier J, Claro IM, Kraemer MUG, Fonseca V, Dellicour S, Thézé J, da Silva Salles F, Gräf T, Silveira PP, do Nascimento VA, Costa de Souza V, de Melo Iani FC, Castilho-Martins EA, Cruz LN, Wallau G, Fabri A, Levy F, Quick J, de Azevedo V, Aguiar RS, de Oliveira T, Bôtto de Menezes C, da Costa Castilho M, Terra TM, Souza da Silva M, Bispo de Filippis AM, Luiz de Abreu A, Oliveira WK, Croda J, Campelo de Albuquerque CF, Nunes MRT, Sabino EC, Loman N, Naveca FG, Pybus OG, Alcantara LC.

Cell Rep. 2020 Feb 12. pii: S2211-1247(20)30119-4. doi: 10.1016/j.celrep.2020.01.085. [Epub ahead of print]

PMID:
32075736
2.

Genomic evidence of yellow fever virus in Aedes scapularis, southeastern Brazil, 2016.

Cunha MS, Faria NR, Caleiro GS, Candido DS, Hill SC, Claro IM, da Costa AC, Nogueira JS, Maeda AY, da Silva FG, de Souza RP, Spinola R, Tubaki RM, de Menezes RMT, Abade L, Mucci LF, Timenetsky MDCST, Sabino E.

Acta Trop. 2020 Feb 7;205:105390. doi: 10.1016/j.actatropica.2020.105390. [Epub ahead of print]

PMID:
32044285
3.

Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.

Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, Hackett JR Jr, Chiu CY.

Nat Microbiol. 2020 Jan 21. doi: 10.1038/s41564-020-0671-7. [Epub ahead of print]

PMID:
31965087
4.

Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.

Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, R Hackett J Jr, Chiu CY.

Nat Microbiol. 2020 Jan 13. doi: 10.1038/s41564-019-0637-9. [Epub ahead of print] Erratum in: Nat Microbiol. 2020 Jan 21;:.

PMID:
31932713
5.

Return of the founder Chikungunya virus to its place of introduction into Brazil is revealed by genomic characterization of exanthematic disease cases.

Pereira Gusmão Maia Z, Mota Pereira F, do Carmo Said RF, Fonseca V, Gräf T, de Bruycker Nogueira F, Brandão Nardy V, Xavier J, Lima Maia M, Abreu AL, Campelo de Albuquerque CF, Kleber Oliveira W, Croda J, de Filippis AMB, Venancio Cunha R, Lourenço J, de Oliveira T, Faria NR, Junior Alcantara LC, Giovanetti M.

Emerg Microbes Infect. 2020 Dec;9(1):53-57. doi: 10.1080/22221751.2019.1701954.

6.

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa.

Faria NR, Vidal N, Lourenco J, Raghwani J, Sigaloff KCE, Tatem AJ, van de Vijver DAM, Pineda-Peña AC, Rose R, Wallis CL, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Muwonga J, Suchard MA, Rinke de Wit TF, Hamers RL, Ndembi N, Baele G, Peeters M, Pybus OG, Lemey P, Dellicour S.

PLoS Pathog. 2019 Dec 6;15(12):e1007976. doi: 10.1371/journal.ppat.1007976. eCollection 2019 Dec.

7.

Evolutionary Dynamics of Oropouche Virus in South America.

Gutierrez B, Wise EL, Pullan ST, Logue CH, Bowden TA, Escalera-Zamudio M, Trueba G, Nunes MRT, Faria NR, Pybus OG.

J Virol. 2020 Feb 14;94(5). pii: e01127-19. doi: 10.1128/JVI.01127-19. Print 2020 Feb 14.

8.

Yellow Fever Virus Reemergence and Spread in Southeast Brazil, 2016-2019.

Giovanetti M, de Mendonça MCL, Fonseca V, Mares-Guia MA, Fabri A, Xavier J, de Jesus JG, Gräf T, Dos Santos Rodrigues CD, Dos Santos CC, Sampaio SA, Chalhoub FLL, de Bruycker Nogueira F, Theze J, Romano APM, Ramos DG, de Abreu AL, Oliveira WK, do Carmo Said RF, de Alburque CFC, de Oliveira T, Fernandes CA, Aguiar SF, Chieppe A, Sequeira PC, Faria NR, Cunha RV, Alcantara LCJ, de Filippis AMB.

J Virol. 2019 Dec 12;94(1). pii: e01623-19. doi: 10.1128/JVI.01623-19. Print 2019 Dec 12.

PMID:
31597773
9.

Emergence of the Asian lineage of Zika virus in Angola: an outbreak investigation.

Hill SC, Vasconcelos J, Neto Z, Jandondo D, Zé-Zé L, Aguiar RS, Xavier J, Thézé J, Mirandela M, Micolo Cândido AL, Vaz F, Sebastião CDS, Wu CH, Kraemer MUG, Melo A, Schamber-Reis BLF, de Azevedo GS, Tanuri A, Higa LM, Clemente C, da Silva SP, da Silva Candido D, Claro IM, Quibuco D, Domingos C, Pocongo B, Watts AG, Khan K, Alcantara LCJ, Sabino EC, Lackritz E, Pybus OG, Alves MJ, Afonso J, Faria NR.

Lancet Infect Dis. 2019 Oct;19(10):1138-1147. doi: 10.1016/S1473-3099(19)30293-2.

10.

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.

Fonseca V, Libin PJK, Theys K, Faria NR, Nunes MRT, Restovic MI, Freire M, Giovanetti M, Cuypers L, Nowé A, Abecasis A, Deforche K, Santiago GA, Siqueira IC, San EJ, Machado KCB, Azevedo V, Filippis AMB, Cunha RVD, Pybus OG, Vandamme AM, Alcantara LCJ, de Oliveira T.

PLoS Negl Trop Dis. 2019 May 8;13(5):e0007231. doi: 10.1371/journal.pntd.0007231. eCollection 2019 May.

11.

Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):901. doi: 10.1038/s41564-019-0440-7.

PMID:
30962571
12.

Reconstruction of the Genetic History and the Current Spread of HIV-1 Subtype A in Germany.

Hanke K, Faria NR, Kühnert D, Yousef KP, Hauser A, Meixenberger K, Hofmann A, Bremer V, Bartmeyer B, Pybus O, Kücherer C, von Kleist M, Bannert N.

J Virol. 2019 May 29;93(12). pii: e02238-18. doi: 10.1128/JVI.02238-18. Print 2019 Jun 15.

13.

Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings.

Kraemer MUG, Golding N, Bisanzio D, Bhatt S, Pigott DM, Ray SE, Brady OJ, Brownstein JS, Faria NR, Cummings DAT, Pybus OG, Smith DL, Tatem AJ, Hay SI, Reiner RC Jr.

Sci Rep. 2019 Mar 26;9(1):5151. doi: 10.1038/s41598-019-41192-3.

14.

Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):900. doi: 10.1038/s41564-019-0429-2.

PMID:
30903094
15.

Early Genomic Detection of Cosmopolitan Genotype of Dengue Virus Serotype 2, Angola, 2018.

Hill SC, Neto de Vasconcelos J, Granja BG, Thézé J, Jandondo D, Neto Z, Mirandela M, Sebastião CDS, Cândido ALM, Clemente C, Pereira da Silva S, de Oliveira T, Pybus OG, Faria NR, Afonso JM.

Emerg Infect Dis. 2019 Apr;25(4):784-787. doi: 10.3201/eid2504.180958.

16.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

Naveca FG, Claro I, Giovanetti M, de Jesus JG, Xavier J, Iani FCM, do Nascimento VA, de Souza VC, Silveira PP, Lourenço J, Santillana M, Kraemer MUG, Quick J, Hill SC, Thézé J, Carvalho RDO, Azevedo V, Salles FCDS, Nunes MRT, Lemos PDS, Candido DDS, Pereira GC, Oliveira MAA, Meneses CAR, Maito RM, Cunha CRSB, Campos DPS, Castilho MDC, Siqueira TCDS, Terra TM, de Albuquerque CFC, da Cruz LN, Abreu AL, Martins DV, Simoes DSMV, Aguiar RS, Luz SLB, Loman N, Pybus OG, Sabino EC, Okumoto O, Alcantara LCJ, Faria NR.

PLoS Negl Trop Dis. 2019 Mar 7;13(3):e0007065. doi: 10.1371/journal.pntd.0007065. eCollection 2019 Mar.

17.

Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Davis Weaver N, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):854-863. doi: 10.1038/s41564-019-0376-y. Epub 2019 Mar 4. Erratum in: Nat Microbiol. 2019 Mar 21;:. Nat Microbiol. 2019 Apr 8;:.

18.

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology.

Vasylyeva TI, du Plessis L, Pineda-Peña AC, Kühnert D, Lemey P, Vandamme AM, Gomes P, Camacho RJ, Pybus OG, Abecasis AB, Faria NR.

J Infect Dis. 2019 Jun 19;220(2):233-243. doi: 10.1093/infdis/jiz085.

19.

First detection and molecular characterization of a DENV-1/DENV-4 co-infection during an epidemic in Rio de Janeiro, Brazil.

de Bruycker-Nogueira F, Faria NRDC, Nunes PCG, Nogueira RMR, de Filippis AMB, Dos Santos FB.

Clin Case Rep. 2018 Sep 17;6(11):2075-2080. doi: 10.1002/ccr3.1750. eCollection 2018 Nov.

20.

The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine.

Vasylyeva TI, Liulchuk M, du Plessis L, Fearnhill E, Zadorozhna V, Babii N, Scherbinska A, Novitsky V, Pybus OG, Faria NR.

AIDS Res Hum Retroviruses. 2019 Feb;35(2):155-163. doi: 10.1089/AID.2018.0167. Epub 2019 Jan 14.

21.

Following in the Footsteps of the Chikungunya Virus in Brazil: The First Autochthonous Cases in Amapá in 2014 and Its Emergence in Rio de Janeiro during 2016.

de Souza TMA, Ribeiro ED, Corrêa VCE, Damasco PV, Santos CC, de Bruycker-Nogueira F, Chouin-Carneiro T, Faria NRDC, Nunes PCG, Heringer M, Lima MDRQ, Badolato-Corrêa J, Cipitelli MDC, Azeredo EL, Nogueira RMR, Dos Santos FB.

Viruses. 2018 Nov 12;10(11). pii: E623. doi: 10.3390/v10110623.

22.

Reconstruction and prediction of viral disease epidemics.

Kraemer MUG, Cummings DAT, Funk S, Reiner RC, Faria NR, Pybus OG, Cauchemez S.

Epidemiol Infect. 2018 Nov 5:1-7. doi: 10.1017/S0950268818002881. [Epub ahead of print]

23.

Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck.

Flammer PG, Dellicour S, Preston SG, Rieger D, Warren S, Tan CKW, Nicholson R, Přichystalová R, Bleicher N, Wahl J, Faria NR, Pybus OG, Pollard M, Smith AL.

Proc Biol Sci. 2018 Oct 3;285(1888). pii: 20180991. doi: 10.1098/rspb.2018.0991.

24.

Genomic and epidemiological monitoring of yellow fever virus transmission potential.

Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG.

Science. 2018 Aug 31;361(6405):894-899. doi: 10.1126/science.aat7115. Epub 2018 Aug 23.

25.

Opsoclonus-myoclonus-ataxia syndrome associated with chikungunya and dengue virus co-infection.

do Rosário MS, Giovanetti M, de Jesus PAP, Farias DS, Faria NR, de Lima CPS, da Silva SP, Nunes MR, Alcantara LCJ, de Siqueira IC.

Int J Infect Dis. 2018 Oct;75:11-14. doi: 10.1016/j.ijid.2018.07.019. Epub 2018 Aug 1.

26.

30 years of dengue fatal cases in Brazil: a laboratorial-based investigation of 1047 cases.

Nunes PCG, de Filippis AMB, Lima MQDR, Faria NRDC, de Bruycker-Nogueira F, Santos JB, Heringer M, Chouin-Carneiro T, Couto-Lima D, de Santis Gonçalves B, Sampaio SA, de Araújo ESM, Sánchez-Arcila JC, Dos Santos FB, Nogueira RMR.

BMC Infect Dis. 2018 Jul 27;18(1):346. doi: 10.1186/s12879-018-3255-x.

27.

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P.

Nat Commun. 2018 Jun 8;9(1):2222. doi: 10.1038/s41467-018-03763-2.

28.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

29.

Challenges in dengue research: A computational perspective.

Lourenço J, Tennant W, Faria NR, Walker A, Gupta S, Recker M.

Evol Appl. 2017 Nov 5;11(4):516-533. doi: 10.1111/eva.12554. eCollection 2018 Apr. Review.

30.

Genomic Insights into Zika Virus Emergence and Spread.

Grubaugh ND, Faria NR, Andersen KG, Pybus OG.

Cell. 2018 Mar 8;172(6):1160-1162. doi: 10.1016/j.cell.2018.02.027.

31.

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.

Vasylyeva TI, Liulchuk M, Friedman SR, Sazonova I, Faria NR, Katzourakis A, Babii N, Scherbinska A, Thézé J, Pybus OG, Smyrnov P, Mbisa JL, Paraskevis D, Hatzakis A, Magiorkinis G.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1051-1056. doi: 10.1073/pnas.1701447115. Epub 2018 Jan 16.

32.

Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil.

Faria NR, da Costa AC, Lourenço J, Loureiro P, Lopes ME, Ribeiro R, Alencar CS, Kraemer MUG, Villabona-Arenas CJ, Wu CH, Thézé J, Khan K, Brent SE, Romano C, Delwart E, Custer B, Busch MP, Pybus OG, Sabino EC; NHLBI Recipient Epidemiology and Donor Evaluation Study-III (REDS-III).

Sci Rep. 2017 Nov 9;7(1):15216. doi: 10.1038/s41598-017-15152-8.

33.

Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil.

Charlys da Costa A, Thézé J, Komninakis SCV, Sanz-Duro RL, Felinto MRL, Moura LCC, Barroso IMO, Santos LEC, Nunes MAL, Moura AA, Lourenço J, Deng X, Delwart EL, Guimarães MRDAS, Pybus OG, Sabino EC, Faria NR.

Emerg Infect Dis. 2017 Oct;23(10):1742-1744. doi: 10.3201/eid2310.170307.

34.

Epidemiological and ecological determinants of Zika virus transmission in an urban setting.

Lourenço J, Maia de Lima M, Faria NR, Walker A, Kraemer MU, Villabona-Arenas CJ, Lambert B, Marques de Cerqueira E, Pybus OG, Alcantara LC, Recker M.

Elife. 2017 Sep 9;6. pii: e29820. doi: 10.7554/eLife.29820.

35.

A10 The evolution and molecular epidemiology of epidemic GII.17 noroviruses.

Lu J, Fang L, Zheng H, Lao J, Yang F, Sun L, Xiao J, Lin J, Song T, Raghwani J, Ke C, Faria NR, Bowden TA, Pybus OG, Li H.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.009. doi: 10.1093/ve/vew036.009. eCollection 2017 Mar. No abstract available.

36.

Increasing airline travel may facilitate co-circulation of multiple dengue virus serotypes in Asia.

Tian H, Sun Z, Faria NR, Yang J, Cazelles B, Huang S, Xu B, Yang Q, Pybus OG, Xu B.

PLoS Negl Trop Dis. 2017 Aug 3;11(8):e0005694. doi: 10.1371/journal.pntd.0005694. eCollection 2017 Aug.

37.

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.

Arias A, Watson SJ, Asogun D, Tobin EA, Lu J, Phan MVT, Jah U, Wadoum REG, Meredith L, Thorne L, Caddy S, Tarawalie A, Langat P, Dudas G, Faria NR, Dellicour S, Kamara A, Kargbo B, Kamara BO, Gevao S, Cooper D, Newport M, Horby P, Dunning J, Sahr F, Brooks T, Simpson AJH, Groppelli E, Liu G, Mulakken N, Rhodes K, Akpablie J, Yoti Z, Lamunu M, Vitto E, Otim P, Owilli C, Boateng I, Okoror L, Omomoh E, Oyakhilome J, Omiunu R, Yemisis I, Adomeh D, Ehikhiametalor S, Akhilomen P, Aire C, Kurth A, Cook N, Baumann J, Gabriel M, Wölfel R, Di Caro A, Carroll MW, Günther S, Redd J, Naidoo D, Pybus OG, Rambaut A, Kellam P, Goodfellow I, Cotten M.

Virus Evol. 2016 Jun 22;2(1):vew016. doi: 10.1093/ve/vew016. eCollection 2016 Jan.

38.

Using Viral Gene Sequences to Compare and Explain the Heterogeneous Spatial Dynamics of Virus Epidemics.

Dellicour S, Rose R, Faria NR, Vieira LFP, Bourhy H, Gilbert M, Lemey P, Pybus OG.

Mol Biol Evol. 2017 Oct 1;34(10):2563-2571. doi: 10.1093/molbev/msx176.

PMID:
28651357
39.

Dengue type 4 in Rio de Janeiro, Brazil: case characterization following its introduction in an endemic region.

Heringer M, Souza TMA, Lima MDRQ, Nunes PCG, Faria NRDC, de Bruycker-Nogueira F, Chouin-Carneiro T, Nogueira RMR, Dos Santos FB.

BMC Infect Dis. 2017 Jun 9;17(1):410. doi: 10.1186/s12879-017-2488-4.

40.

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ.

Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24.

41.

Establishment and cryptic transmission of Zika virus in Brazil and the Americas.

Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET Jr, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG.

Nature. 2017 Jun 15;546(7658):406-410. doi: 10.1038/nature22401. Epub 2017 May 24.

42.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24.

43.

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A.

Nature. 2017 Apr 20;544(7650):309-315. doi: 10.1038/nature22040. Epub 2017 Apr 12.

44.

First Report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil.

Souza TM, Azeredo EL, Badolato-Corrêa J, Damasco PV, Santos C, Petitinga-Paiva F, Nunes PC, Barbosa LS, Cipitelli MC, Chouin-Carneiro T, Faria NR, Nogueira RM, de Bruycker-Nogueira F, Dos Santos FB.

PLoS Curr. 2017 Feb 14;9. pii: ecurrents.outbreaks.4200119978d62ccaa454599cd2735727. doi: 10.1371/currents.outbreaks.4200119978d62ccaa454599cd2735727.

45.

Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study.

Kraemer MUG, Faria NR, Reiner RC Jr, Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S.

Lancet Infect Dis. 2017 Mar;17(3):330-338. doi: 10.1016/S1473-3099(16)30513-8. Epub 2016 Dec 23. Erratum in: Lancet Infect Dis. 2019 Apr;19(4):e109.

46.

Effect of Live Poultry Market Interventions on Influenza A(H7N9) Virus, Guangdong, China.

Wu J, Lu J, Faria NR, Zeng X, Song Y, Zou L, Yi L, Liang L, Ni H, Kang M, Zhang X, Huang G, Zhong H, Bowden TA, Raghwani J, He J, He X, Lin J, Koopmans M, Pybus OG, Ke C.

Emerg Infect Dis. 2016 Dec;22(12):2104-2112. doi: 10.3201/eid2212.160450.

47.

Mobile real-time surveillance of Zika virus in Brazil.

Faria NR, Sabino EC, Nunes MR, Alcantara LC, Loman NJ, Pybus OG.

Genome Med. 2016 Sep 29;8(1):97.

48.

HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer.

Rose R, Lamers SL, Nolan DJ, Maidji E, Faria NR, Pybus OG, Dollar JJ, Maruniak SA, McAvoy AC, Salemi M, Stoddart CA, Singer EJ, McGrath MS.

J Virol. 2016 Sep 29;90(20):8984-93. doi: 10.1128/JVI.00684-16. Print 2016 Oct 15.

49.

Distinct Zika Virus Lineage in Salvador, Bahia, Brazil.

Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY.

Emerg Infect Dis. 2016 Oct;22(10):1788-92. doi: 10.3201/eid2210.160663. Epub 2016 Oct 15.

50.

The Evolution and Transmission of Epidemic GII.17 Noroviruses.

Lu J, Fang L, Zheng H, Lao J, Yang F, Sun L, Xiao J, Lin J, Song T, Ni T, Raghwani J, Ke C, Faria NR, Bowden TA, Pybus OG, Li H.

J Infect Dis. 2016 Aug 15;214(4):556-64. doi: 10.1093/infdis/jiw208. Epub 2016 May 24.

Supplemental Content

Loading ...
Support Center