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Whole-Genome Sequencing-Based Characterization of 100 Listeria monocytogenes Isolates Collected from Food Processing Environments over a Four-Year Period.

Hurley D, Luque-Sastre L, Parker CT, Huynh S, Eshwar AK, Nguyen SV, Andrews N, Moura A, Fox EM, Jordan K, Lehner A, Stephan R, Fanning S.

mSphere. 2019 Aug 7;4(4). pii: e00252-19. doi: 10.1128/mSphere.00252-19.


Complete Genome and Plasmid Sequences of Seven Isolates of Salmonella enterica subsp. enterica Harboring the mcr-1 Gene Obtained from Food in China.

Hu Y, Nguyen SV, Liu C, Wang W, Dong Y, Fanning S, Li F.

Microbiol Resour Announc. 2019 Aug 1;8(31). pii: e00114-19. doi: 10.1128/MRA.00114-19.


Detection of plasmid-mediated tigecycline-resistant gene tet(X4) in Escherichia coli from pork, Sichuan and Shandong Provinces, China, February 2019.

Bai L, Du P, Du Y, Sun H, Zhang P, Wan Y, Lin Q, Fanning S, Cui S, Wu Y.

Euro Surveill. 2019 Jun;24(25). doi: 10.2807/1560-7917.ES.2019.24.25.1900340.


Genome Sequence for Candida albicans Clinical Oral Isolate 529L.

Cuomo CA, Fanning S, Gujja S, Zeng Q, Naglik JR, Filler SG, Mitchell AP.

Microbiol Resour Announc. 2019 Jun 20;8(25). pii: e00554-19. doi: 10.1128/MRA.00554-19.


Yersinia hibernica sp. nov., isolated from pig-production environments.

Nguyen SV, Muthappa DM, Hurley D, Donoghue O, McCabe E, Anes J, Schaffer K, Murphy BP, Buckley JF, Fanning S.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2023-2027. doi: 10.1099/ijsem.0.003422. Epub 2019 May 8.


Susceptibility (re)-testing of a large collection of Listeria monocytogenes from foods in China from 2012 to 2015 and WGS characterization of resistant isolates.

Yan S, Li M, Luque-Sastre L, Wang W, Hu Y, Peng Z, Dong Y, Gan X, Nguyen S, Anes J, Bai Y, Xu J, Fanning S, Li F.

J Antimicrob Chemother. 2019 Jul 1;74(7):1786-1794. doi: 10.1093/jac/dkz126.


Exposure to Sub-inhibitory Concentrations of the Chemosensitizer 1-(1-Naphthylmethyl)-Piperazine Creates Membrane Destabilization in Multi-Drug Resistant Klebsiella pneumoniae.

Anes J, Sivasankaran SK, Muthappa DM, Fanning S, Srikumar S.

Front Microbiol. 2019 Feb 13;10:92. doi: 10.3389/fmicb.2019.00092. eCollection 2019.


Identification of a novel hybrid plasmid coproducing MCR-1 and MCR-3 variant from an Escherichia coli strain.

Li R, Zhang P, Yang X, Wang Z, Fanning S, Wang J, Du P, Bai L.

J Antimicrob Chemother. 2019 Jun 1;74(6):1517-1520. doi: 10.1093/jac/dkz058.


Studying α-Synuclein Conformation by Intact-Cell Cross-Linking.

Imberdis T, Fanning S, Newman A, Ramalingam N, Dettmer U.

Methods Mol Biol. 2019;1948:77-91. doi: 10.1007/978-1-4939-9124-2_8.


Next-Generation ERα Inhibitors for Endocrine-Resistant ER+ Breast Cancer.

Fanning SW, Greene GL.

Endocrinology. 2019 Apr 1;160(4):759-769. doi: 10.1210/en.2018-01095.


Salmonella harbouring the mcr-1 gene isolated from food in China between 2012 and 2016.

Hu Y, Fanning S, Gan X, Liu C, Nguyen S, Wang M, Wang W, Jiang T, Xu J, Li F.

J Antimicrob Chemother. 2019 Mar 1;74(3):826-828. doi: 10.1093/jac/dky496. No abstract available.


NLRP3-Dependent and -Independent Processing of Interleukin (IL)-1β in Active Ulcerative Colitis.

Ranson N, Veldhuis M, Mitchell B, Fanning S, Cook AL, Kunde D, Eri R.

Int J Mol Sci. 2018 Dec 23;20(1). pii: E57. doi: 10.3390/ijms20010057.


Lipidomic Analysis of α-Synuclein Neurotoxicity Identifies Stearoyl CoA Desaturase as a Target for Parkinson Treatment.

Fanning S, Haque A, Imberdis T, Baru V, Barrasa MI, Nuber S, Termine D, Ramalingam N, Ho GPH, Noble T, Sandoe J, Lou Y, Landgraf D, Freyzon Y, Newby G, Soldner F, Terry-Kantor E, Kim TE, Hofbauer HF, Becuwe M, Jaenisch R, Pincus D, Clish CB, Walther TC, Farese RV Jr, Srinivasan S, Welte MA, Kohlwein SD, Dettmer U, Lindquist S, Selkoe D.

Mol Cell. 2019 Mar 7;73(5):1001-1014.e8. doi: 10.1016/j.molcel.2018.11.028. Epub 2018 Dec 4.


Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains.

Jang H, Woo J, Lee Y, Negrete F, Finkelstein S, Chase HR, Addy N, Ewing L, Beaubrun JJG, Patel I, Gangiredla J, Eshwar A, Jaradat ZW, Seo K, Shabarinath S, Fanning S, Stephan R, Lehner A, Tall BD, Gopinath GR.

Stand Genomic Sci. 2018 Nov 29;13:35. doi: 10.1186/s40793-018-0339-6. eCollection 2018.


The SERM/SERD bazedoxifene disrupts ESR1 helix 12 to overcome acquired hormone resistance in breast cancer cells.

Fanning SW, Jeselsohn R, Dharmarajan V, Mayne CG, Karimi M, Buchwalter G, Houtman R, Toy W, Fowler CE, Han R, Lainé M, Carlson KE, Martin TA, Nowak J, Nwachukwu JC, Hosfield DJ, Chandarlapaty S, Tajkhorshid E, Nettles KW, Griffin PR, Shen Y, Katzenellenbogen JA, Brown M, Greene GL.

Elife. 2018 Nov 29;7. pii: e37161. doi: 10.7554/eLife.37161.


RNA Sequencing-Based Transcriptional Overview of Xerotolerance in Cronobacter sakazakii SP291.

Srikumar S, Cao Y, Yan Q, Van Hoorde K, Nguyen S, Cooney S, Gopinath GR, Tall BD, Sivasankaran SK, Lehner A, Stephan R, Fanning S.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e01993-18. doi: 10.1128/AEM.01993-18. Print 2019 Feb 1.


Increased Virulence of Bloodstream Over Peripheral Isolates of P. aeruginosa Identified Through Post-transcriptional Regulation of Virulence Factors.

Hickey C, Schaible B, Nguyen S, Hurley D, Srikumar S, Fanning S, Brown E, Crifo B, Matallanas D, McClean S, Taylor CT, Schaffer K.

Front Cell Infect Microbiol. 2018 Oct 26;8:357. doi: 10.3389/fcimb.2018.00357. eCollection 2018.


Modulation of antimicrobial resistance in clinical isolates of Enterobacter aerogenes: A strategy combining antibiotics and chemosensitisers.

McCusker MP, Alves Ferreira D, Cooney D, Martins Alves B, Fanning S, Pagès JM, Martins M, Davin-Regli A.

J Glob Antimicrob Resist. 2019 Mar;16:187-198. doi: 10.1016/j.jgar.2018.10.009. Epub 2018 Oct 12.


Multi-drug resistant Escherichia coli in diarrhoeagenic foals: Pulsotyping, phylotyping, serotyping, antibiotic resistance and virulence profiling.

Kennedy CA, Walsh C, Karczmarczyk M, O'Brien S, Akasheh N, Quirke M, Farrell-Ward S, Buckley T, Fogherty U, Kavanagh K, Parker CT, Sweeney T, Fanning S.

Vet Microbiol. 2018 Sep;223:144-152. doi: 10.1016/j.vetmic.2018.08.009. Epub 2018 Aug 7.


A Comparative Study of the Susceptibility of Listeria Species to Sanitizer Treatments When Grown under Planktonic and Biofilm Conditions.

Luque-Sastre L, Fox EM, Jordan K, Fanning S.

J Food Prot. 2018 Sep;81(9):1481-1490. doi: 10.4315/0362-028X.JFP-17-466.


A scoping review on the prevalence of Shiga-toxigenic Escherichia coli in wild animal species.

Espinosa L, Gray A, Duffy G, Fanning S, McMahon BJ.

Zoonoses Public Health. 2018 Dec;65(8):911-920. doi: 10.1111/zph.12508. Epub 2018 Aug 11. Review.


Effects of metal and metalloid pollutants on the microbiota composition of feces obtained from twelve commercial pig farms across China.

Peng Z, Zhang J, Fanning S, Wang L, Li M, Maheshwari N, Sun J, Li F.

Sci Total Environ. 2019 Jan 10;647:577-586. doi: 10.1016/j.scitotenv.2018.08.026. Epub 2018 Aug 3.


Antimicrobial Resistance in Listeria Species.

Luque-Sastre L, Arroyo C, Fox EM, McMahon BJ, Bai L, Li F, Fanning S.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.ARBA-0031-2017. Review.


Reversing Antimicrobial Resistance in Multidrug-Resistant Klebsiella pneumoniae of Clinical Origin Using 1-(1-Naphthylmethyl)-Piperazine.

Anes J, Martins M, Fanning S.

Microb Drug Resist. 2018 Jul 13. doi: 10.1089/mdr.2017.0386. [Epub ahead of print]


Prevalence and Characterization of Staphylococcus aureus Cultured From Raw Milk Taken From Dairy Cows With Mastitis in Beijing, China.

Wang W, Lin X, Jiang T, Peng Z, Xu J, Yi L, Li F, Fanning S, Baloch Z.

Front Microbiol. 2018 Jun 22;9:1123. doi: 10.3389/fmicb.2018.01123. eCollection 2018.


Interaction of matrix metalloproteinase-9 and Zpx in Cronobacter turicensis LMG 23827T mediated infections in the zebrafish model.

Eshwar AK, Wolfrum N, Stephan R, Fanning S, Lehner A.

Cell Microbiol. 2018 Nov;20(11):e12888. doi: 10.1111/cmi.12888. Epub 2018 Aug 3.


Nod-Like Receptor Pyrin-Containing Protein 6 (NLRP6) Is Up-regulated in Ileal Crohn's Disease and Differentially Expressed in Goblet Cells.

Ranson N, Veldhuis M, Mitchell B, Fanning S, Cook AL, Kunde D, Eri R.

Cell Mol Gastroenterol Hepatol. 2018 Mar 13;6(1):110-112.e8. doi: 10.1016/j.jcmgh.2018.03.001. eCollection 2018. No abstract available.


Specific stereochemistry of OP-1074 disrupts estrogen receptor alpha helix 12 and confers pure antiestrogenic activity.

Fanning SW, Hodges-Gallagher L, Myles DC, Sun R, Fowler CE, Plant IN, Green BD, Harmon CL, Greene GL, Kushner PJ.

Nat Commun. 2018 Jun 18;9(1):2368. doi: 10.1038/s41467-018-04413-3.


Complete Genomic Analysis of a Salmonella enterica Serovar Typhimurium Isolate Cultured From Ready-to-Eat Pork in China Carrying One Large Plasmid Containing mcr-1.

Wang W, Baloch Z, Zou M, Dong Y, Peng Z, Hu Y, Xu J, Yasmeen N, Li F, Fanning S.

Front Microbiol. 2018 Apr 27;9:616. doi: 10.3389/fmicb.2018.00616. eCollection 2018.


Endoxifen, 4-Hydroxytamoxifen and an Estrogenic Derivative Modulate Estrogen Receptor Complex Mediated Apoptosis in Breast Cancer.

Maximov PY, Abderrahman B, Fanning SW, Sengupta S, Fan P, Curpan RF, Rincon DMQ, Greenland JA, Rajan SS, Greene GL, Jordan VC.

Mol Pharmacol. 2018 Aug;94(2):812-822. doi: 10.1124/mol.117.111385. Epub 2018 May 8.


A "cross-stitched" peptide with improved helicity and proteolytic stability.

Speltz TE, Mayne CG, Fanning SW, Siddiqui Z, Tajkhorshid E, Greene GL, Moore TW.

Org Biomol Chem. 2018 May 23;16(20):3702-3706. doi: 10.1039/c8ob00790j.


ASBMT Practice Guidelines Committee Survey on Long-Term Follow-Up Clinics for Hematopoietic Cell Transplant Survivors.

Hashmi SK, Lee SJ, Savani BN, Burns L, Wingard JR, Perales MA, Palmer J, Chow E, Meyer E, Marks D, Mohty M, Inamoto Y, Rodriguez C, Nagler A, Sauter C, Komanduri KV, Pidala J, Hamadani M, Johnston L, Shah N, Shaughnessy P, Hamilton BK, Majhail N, Kharfan-Dabaja MA, Schriber J, DeFilipp Z, Tarlock KG, Fanning S, Curtin P, Rizzo JD, Carpenter PA.

Biol Blood Marrow Transplant. 2018 Jun;24(6):1119-1124. doi: 10.1016/j.bbmt.2018.03.023. Epub 2018 Mar 30.


Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples.

Gopinath GR, Chase HR, Gangiredla J, Eshwar A, Jang H, Patel I, Negrete F, Finkelstein S, Park E, Chung T, Yoo Y, Woo J, Lee Y, Park J, Choi H, Jeong S, Jun S, Kim M, Lee C, Jeong H, Fanning S, Stephan R, Iversen C, Reich F, Klein G, Lehner A, Tall BD.

Gut Pathog. 2018 Mar 10;10:11. doi: 10.1186/s13099-018-0238-9. eCollection 2018.


Translocon Declogger Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity.

Kayatekin C, Amasino A, Gaglia G, Flannick J, Bonner JM, Fanning S, Narayan P, Barrasa MI, Pincus D, Landgraf D, Nelson J, Hesse WR, Costanzo M; AMP T2D-GENES Consortium, Myers CL, Boone C, Florez JC, Lindquist S.

Cell. 2018 Mar 22;173(1):62-73.e9. doi: 10.1016/j.cell.2018.02.026. Epub 2018 Mar 8.


The impact of wire caliber on ERCP outcomes: a multicenter randomized controlled trial of 0.025-inch and 0.035-inch guidewires.

Bassan MS, Sundaralingam P, Fanning SB, Lau J, Menon J, Ong E, Rerknimitr R, Seo DW, Teo EK, Wang HP, Reddy DN, Goh KL, Bourke MJ.

Gastrointest Endosc. 2018 Jun;87(6):1454-1460. doi: 10.1016/j.gie.2017.11.037. Epub 2018 Jan 6.


Ram locus is a key regulator to trigger multidrug resistance in Enterobacter aerogenes.

Molitor A, James CE, Fanning S, Pagès JM, Davin-Regli A.

J Med Microbiol. 2018 Feb;67(2):148-159. doi: 10.1099/jmm.0.000667. Epub 2018 Jan 3.


FKBP12 contributes to α-synuclein toxicity by regulating the calcineurin-dependent phosphoproteome.

Caraveo G, Soste M, Cappelleti V, Fanning S, van Rossum DB, Whitesell L, Huang Y, Chung CY, Baru V, Zaichick S, Picotti P, Lindquist S.

Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):E11313-E11322. doi: 10.1073/pnas.1711926115. Epub 2017 Dec 11.


Enterotoxigenicity and Antimicrobial Resistance of Staphylococcus aureus Isolated from Retail Food in China.

Wang W, Baloch Z, Jiang T, Zhang C, Peng Z, Li F, Fanning S, Ma A, Xu J.

Front Microbiol. 2017 Nov 21;8:2256. doi: 10.3389/fmicb.2017.02256. eCollection 2017.


Salmonella in breeding pigs: Shedding pattern, transmission of infection and the role of environmental contamination in Irish commercial farrow-to-finish herds.

Lynch H, Walia K, Leonard FC, Lawlor PG, Manzanilla EG, Grant J, Duffy G, Gardiner GE, Cormican M, King J, Markey BK, Fanning S, Argüello H.

Zoonoses Public Health. 2018 Feb;65(1):e196-e206. doi: 10.1111/zph.12428. Epub 2017 Nov 27.


Exploring the Genome and Phenotype of Multi-Drug Resistant Klebsiella pneumoniae of Clinical Origin.

Anes J, Hurley D, Martins M, Fanning S.

Front Microbiol. 2017 Oct 23;8:1913. doi: 10.3389/fmicb.2017.01913. eCollection 2017.


Complete genetic analysis of a Salmonella enterica serovar Indiana isolate accompanying four plasmids carrying mcr-1, ESBL and other resistance genes in China.

Wang J, Li X, Li J, Hurley D, Bai X, Yu Z, Cao Y, Wall E, Fanning S, Bai L.

Vet Microbiol. 2017 Oct;210:142-146. doi: 10.1016/j.vetmic.2017.08.024. Epub 2017 Sep 14.


A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies.

Cao Y, Fanning S, Proos S, Jordan K, Srikumar S.

Front Microbiol. 2017 Sep 21;8:1829. doi: 10.3389/fmicb.2017.01829. eCollection 2017. Review.


Loss of native α-synuclein multimerization by strategically mutating its amphipathic helix causes abnormal vesicle interactions in neuronal cells.

Dettmer U, Ramalingam N, von Saucken VE, Kim TE, Newman AJ, Terry-Kantor E, Nuber S, Ericsson M, Fanning S, Bartels T, Lindquist S, Levy OA, Selkoe D.

Hum Mol Genet. 2017 Sep 15;26(18):3466-3481. doi: 10.1093/hmg/ddx227.


Editorial: Microbial Food Safety along the Dairy Chain.

Fox EM, Fanning S, Corsetti A, Jordan K.

Front Microbiol. 2017 Aug 23;8:1612. doi: 10.3389/fmicb.2017.01612. eCollection 2017. No abstract available.


Genomic characterization of an extensively-drug resistance Salmonella enterica serotype Indiana strain harboring blaNDM-1 gene isolated from a chicken carcass in China.

Wang W, Peng Z, Baloch Z, Hu Y, Xu J, Zhang W, Fanning S, Li F.

Microbiol Res. 2017 Nov;204:48-54. doi: 10.1016/j.micres.2017.07.006. Epub 2017 Jul 27.


Controlling Blown Pack Spoilage Using Anti-Microbial Packaging.

Reid R, Bolton D, Tiuftin AA, Kerry JP, Fanning S, Whyte P.

Foods. 2017 Aug 12;6(8). pii: E67. doi: 10.3390/foods6080067.


Genomic insights into the pathogenicity and environmental adaptability of Enterococcus hirae R17 isolated from pork offered for retail sale.

Peng Z, Li M, Wang W, Liu H, Fanning S, Hu Y, Zhang J, Li F.

Microbiologyopen. 2017 Dec;6(6). doi: 10.1002/mbo3.514. Epub 2017 Aug 10.


Prototheca zopfii Induced Ultrastructural Features Associated with Apoptosis in Bovine Mammary Epithelial Cells.

Shahid M, Wang J, Gu X, Chen W, Ali T, Gao J, Han D, Yang R, Fanning S, Han B.

Front Cell Infect Microbiol. 2017 Jul 13;7:299. doi: 10.3389/fcimb.2017.00299. eCollection 2017.


Molecular and Epidemiological Characterization of Infant Botulism in Beijing, China.

Dong YP, Wang W, Jiang T, Xu J, Han CH, Yan SF, Fanning S, Li Y, Ma XC, Zhang D, Zhao Y, Zeng B, Li FQ.

Biomed Environ Sci. 2017 Jun;30(6):460-464. doi: 10.3967/bes2017.061.


Genomic characterization of a large plasmid containing a bla NDM-1 gene carried on Salmonella enterica serovar Indiana C629 isolate from China.

Wang W, Baloch Z, Peng Z, Hu Y, Xu J, Fanning S, Li F.

BMC Infect Dis. 2017 Jul 7;17(1):479. doi: 10.1186/s12879-017-2515-5.

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