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Items: 1 to 50 of 160

1.

Promoting Model Systems of Microbiota-Medicinal Plant Interactions.

Maggini V, Mengoni A, Bogani P, Firenzuoli F, Fani R.

Trends Plant Sci. 2020 Jan 13. pii: S1360-1385(19)30338-3. doi: 10.1016/j.tplants.2019.12.013. [Epub ahead of print]

PMID:
31948792
2.

A Method for the Structure-Based, Genome-Wide Analysis of Bacterial Intergenic Sequences Identifies Shared Compositional and Functional Features.

Lenzini L, Di Patti F, Livi R, Fondi M, Fani R, Mengoni A.

Genes (Basel). 2019 Oct 22;10(10). pii: E834. doi: 10.3390/genes10100834.

3.

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards.

Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR 3rd, Ciofi C, Kwok PY, Pollard KS, Bruneau BG.

Nat Ecol Evol. 2019 Aug;3(8):1241-1252. doi: 10.1038/s41559-019-0945-8. Epub 2019 Jul 29.

4.

The influence of Echinacea purpurea leaf microbiota on chicoric acid level.

Maggini V, De Leo M, Granchi C, Tuccinardi T, Mengoni A, Gallo ER, Biffi S, Fani R, Pistelli L, Firenzuoli F, Bogani P.

Sci Rep. 2019 Jul 26;9(1):10897. doi: 10.1038/s41598-019-47329-8.

5.

Tissue specificity and differential effects on in vitro plant growth of single bacterial endophytes isolated from the roots, leaves and rhizospheric soil of Echinacea purpurea.

Maggini V, Mengoni A, Gallo ER, Biffi S, Fani R, Firenzuoli F, Bogani P.

BMC Plant Biol. 2019 Jun 28;19(1):284. doi: 10.1186/s12870-019-1890-z.

6.

Microbial community composition of water samples stored inside the International Space Station.

Bacci G, Amalfitano S, Levantesi C, Rossetti S, Garrelly L, Canganella F, Bianconi G; Biowyse Consortium, Di Pilato V, Rossolini GM, Mengoni A, Fani R, Perrin E.

Res Microbiol. 2019 Jun - Aug;170(4-5):230-234. doi: 10.1016/j.resmic.2019.04.003. Epub 2019 May 7.

PMID:
31075387
7.

The art of adapting to extreme environments: The model system Pseudoalteromonas.

Parrilli E, Tedesco P, Fondi M, Tutino ML, Lo Giudice A, de Pascale D, Fani R.

Phys Life Rev. 2019 Apr 4. pii: S1571-0645(19)30066-1. doi: 10.1016/j.plrev.2019.04.003. [Epub ahead of print] Review.

PMID:
31072789
8.

Harmful Effect of Rheinheimera sp. EpRS3 (Gammaproteobacteria) Against the Protist Euplotes aediculatus (Ciliophora, Spirotrichea): Insights Into the Ecological Role of Antimicrobial Compounds From Environmental Bacterial Strains.

Chiellini C, Pasqualetti C, Lanzoni O, Fagorzi C, Bazzocchi C, Fani R, Petroni G, Modeo L.

Front Microbiol. 2019 Mar 22;10:510. doi: 10.3389/fmicb.2019.00510. eCollection 2019.

9.

Volatile profile of Echinacea purpurea plants after in vitro endophyte infection.

Maggini V, Bandeira Reidel RV, De Leo M, Mengoni A, Gallo ER, Miceli E, Biffi S, Fani R, Firenzuoli F, Bogani P, Pistelli L.

Nat Prod Res. 2019 Mar 25:1-6. doi: 10.1080/14786419.2019.1579810. [Epub ahead of print]

PMID:
30908079
10.

Assessment and characterization of the bacterial community structure in advanced activated sludge systems.

Cinà P, Bacci G, Arancio W, Gallo G, Fani R, Puglia AM, Di Trapani D, Mannina G.

Bioresour Technol. 2019 Jun;282:254-261. doi: 10.1016/j.biortech.2019.03.018. Epub 2019 Mar 6.

PMID:
30870691
11.

Design and start-up of a constructed wetland as tertiary treatment for landfill leachates.

Coppini E, Palli L, Antal A, Del Bubba M, Miceli E, Fani R, Fibbi D.

Water Sci Technol. 2019 Jan;79(1):145-155. doi: 10.2166/wst.2019.030.

PMID:
30816871
12.

Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages.

Gallo G, Presta L, Perrin E, Gallo M, Marchetto D, Puglia AM, Fani R, Baldi F.

BMC Microbiol. 2018 Nov 27;18(1):198. doi: 10.1186/s12866-018-1330-5.

13.

Antibiotics from Deep-Sea Microorganisms: Current Discoveries and Perspectives.

Tortorella E, Tedesco P, Palma Esposito F, January GG, Fani R, Jaspars M, de Pascale D.

Mar Drugs. 2018 Sep 29;16(10). pii: E355. doi: 10.3390/md16100355. Review.

14.

Spatial structuring of bacterial communities in epilithic biofilms in the Acquarossa river (Italy).

Chiellini C, Miceli E, Bacci G, Fagorzi C, Coppini E, Fibbi D, Bianconi G, Mengoni A, Canganella F, Fani R.

FEMS Microbiol Ecol. 2018 Nov 1;94(12). doi: 10.1093/femsec/fiy181.

PMID:
30202963
15.

Antagonism and antibiotic resistance drive a species-specific plant microbiota differentiation in Echinacea spp.

Maggini V, Miceli E, Fagorzi C, Maida I, Fondi M, Perrin E, Mengoni A, Bogani P, Chiellini C, Mocali S, Fabiani A, Decorosi F, Giovannetti L, Firenzuoli F, Fani R.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy118.

PMID:
29912319
16.

Furnishing spaceship environment: evaluation of bacterial biofilms on different materials used inside International Space Station.

Perrin E, Bacci G, Garrelly L, Canganella F, Bianconi G; Biowyse Consortium, Fani R, Mengoni A.

Res Microbiol. 2018 Jul - Aug;169(6):289-295. doi: 10.1016/j.resmic.2018.04.001. Epub 2018 May 8.

PMID:
29751063
17.

Preliminary Comparison of Oral and Intestinal Human Microbiota in Patients with Colorectal Cancer: A Pilot Study.

Russo E, Bacci G, Chiellini C, Fagorzi C, Niccolai E, Taddei A, Ricci F, Ringressi MN, Borrelli R, Melli F, Miloeva M, Bechi P, Mengoni A, Fani R, Amedei A.

Front Microbiol. 2018 Jan 12;8:2699. doi: 10.3389/fmicb.2017.02699. eCollection 2017.

18.

Pseudoalteromonas haloplanktis TAC125 produces 4-hydroxybenzoic acid that induces pyroptosis in human A459 lung adenocarcinoma cells.

Sannino F, Sansone C, Galasso C, Kildgaard S, Tedesco P, Fani R, Marino G, de Pascale D, Ianora A, Parrilli E, Larsen TO, Romano G, Tutino ML.

Sci Rep. 2018 Jan 19;8(1):1190. doi: 10.1038/s41598-018-19536-2.

19.

Plant-endophytes interaction influences the secondary metabolism in Echinacea purpurea (L.) Moench: an in vitro model.

Maggini V, De Leo M, Mengoni A, Gallo ER, Miceli E, Reidel RVB, Biffi S, Pistelli L, Fani R, Firenzuoli F, Bogani P.

Sci Rep. 2017 Dec 5;7(1):16924. doi: 10.1038/s41598-017-17110-w.

20.

Antimicrobial activity of six essential oils against Burkholderia cepacia complex: insights into mechanism(s) of action.

Perrin E, Maggini V, Maida I, Gallo E, Lombardo K, Madarena MP, Buroni S, Scoffone VC, Firenzuoli F, Mengoni A, Fani R.

Future Microbiol. 2018 Jan;13:59-67. doi: 10.2217/fmb-2017-0121. Epub 2017 Dec 4.

PMID:
29199856
21.

Subfunctionalization influences the expansion of bacterial multidrug antibiotic resistance.

Perrin E, Fondi M, Bosi E, Mengoni A, Buroni S, Scoffone VC, Valvano M, Fani R.

BMC Genomics. 2017 Oct 30;18(1):834. doi: 10.1186/s12864-017-4222-4.

22.

Constraint-based metabolic modelling of marine microbes and communities.

Fondi M, Fani R.

Mar Genomics. 2017 Aug;34:1-10. doi: 10.1016/j.margen.2017.06.003. Epub 2017 Jun 23. Review.

PMID:
28648476
23.

New Genome Sequence of an Echinaceapurpurea Endophyte, Arthrobacter sp. Strain EpSL27, Able To Inhibit Human-Opportunistic Pathogens.

Miceli E, Presta L, Maggini V, Fondi M, Bosi E, Chiellini C, Fagorzi C, Bogani P, Di Pilato V, Rossolini GM, Mengoni A, Firenzuoli F, Perrin E, Fani R.

Genome Announc. 2017 Jun 22;5(25). pii: e00565-17. doi: 10.1128/genomeA.00565-17.

24.

Constraint-based modeling identifies new putative targets to fight colistin-resistant A. baumannii infections.

Presta L, Bosi E, Mansouri L, Dijkshoorn L, Fani R, Fondi M.

Sci Rep. 2017 Jun 16;7(1):3706. doi: 10.1038/s41598-017-03416-2.

25.

Draft Genome Sequence of Pseudomonas sp. Strain Ep R1 Isolated from Echinacea purpurea Roots and Effective in the Growth Inhibition of Human Opportunistic Pathogens Belonging to the Burkholderia cepacia Complex.

Maggini V, Presta L, Miceli E, Fondi M, Bosi E, Chiellini C, Fagorzi C, Bogani P, Di Pilato V, Rossolini GM, Mengoni A, Firenzuoli F, Perrin E, Fani R.

Genome Announc. 2017 May 18;5(20). pii: e00351-17. doi: 10.1128/genomeA.00351-17.

26.

Ecology of cold environments: new insights of bacterial metabolic adaptation through an integrated genomic-phenomic approach.

Mocali S, Chiellini C, Fabiani A, Decuzzi S, de Pascale D, Parrilli E, Tutino ML, Perrin E, Bosi E, Fondi M, Lo Giudice A, Fani R.

Sci Rep. 2017 Apr 12;7(1):839. doi: 10.1038/s41598-017-00876-4.

27.

Preliminary data on antibacterial activity of Echinacea purpurea-associated bacterial communities against Burkholderia cepacia complex strains, opportunistic pathogens of Cystic Fibrosis patients.

Chiellini C, Maida I, Maggini V, Bosi E, Mocali S, Emiliani G, Perrin E, Firenzuoli F, Mengoni A, Fani R.

Microbiol Res. 2017 Mar;196:34-43. doi: 10.1016/j.micres.2016.12.001. Epub 2016 Dec 15.

28.

The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights.

Bosi E, Fondi M, Orlandini V, Perrin E, Maida I, de Pascale D, Tutino ML, Parrilli E, Lo Giudice A, Filloux A, Fani R.

BMC Genomics. 2017 Jan 17;18(1):93. doi: 10.1186/s12864-016-3382-y.

29.

Pseudoalteromonas haloplanktis produces methylamine, a volatile compound active against Burkholderia cepacia complex strains.

Sannino F, Parrilli E, Apuzzo GA, de Pascale D, Tedesco P, Maida I, Perrin E, Fondi M, Fani R, Marino G, Tutino ML.

N Biotechnol. 2017 Mar 25;35:13-18. doi: 10.1016/j.nbt.2016.10.009. Epub 2016 Oct 29.

PMID:
27989956
30.

Phenotypic and genomic characterization of the antimicrobial producer Rheinheimera sp. EpRS3 isolated from the medicinal plant Echinacea purpurea: insights into its biotechnological relevance.

Presta L, Bosi E, Fondi M, Maida I, Perrin E, Miceli E, Maggini V, Bogani P, Firenzuoli F, Di Pilato V, Rossolini GM, Mengoni A, Fani R.

Res Microbiol. 2017 Apr;168(3):293-305. doi: 10.1016/j.resmic.2016.11.001. Epub 2016 Nov 22.

PMID:
27884784
31.

Is the plant-associated microbiota of Thymus spp. adapted to plant essential oil?

Checcucci A, Maida I, Bacci G, Ninno C, Bilia AR, Biffi S, Firenzuoli F, Flamini G, Fani R, Mengoni A.

Res Microbiol. 2017 Apr;168(3):276-282. doi: 10.1016/j.resmic.2016.11.004. Epub 2016 Nov 21.

PMID:
27884782
32.

Modelling microbial metabolic rewiring during growth in a complex medium.

Fondi M, Bosi E, Presta L, Natoli D, Fani R.

BMC Genomics. 2016 Nov 24;17(1):970.

33.

A novel synthetic medium and expression system for subzero growth and recombinant protein production in Pseudoalteromonas haloplanktis TAC125.

Sannino F, Giuliani M, Salvatore U, Apuzzo GA, de Pascale D, Fani R, Fondi M, Marino G, Tutino ML, Parrilli E.

Appl Microbiol Biotechnol. 2017 Jan;101(2):725-734. doi: 10.1007/s00253-016-7942-5. Epub 2016 Oct 27.

PMID:
27796433
34.

Can an Imidazole Be Formed from an Alanyl-Seryl-Glycine Tripeptide under Possible Prebiotic Conditions?

Vázquez-Salazar A, Tan G, Stockton A, Fani R, Becerra A, Lazcano A.

Orig Life Evol Biosph. 2017 Sep;47(3):345-354. doi: 10.1007/s11084-016-9525-y. Epub 2016 Oct 22.

PMID:
27771860
35.

Arthrobacter sp. EpRS66 and Arthrobacter sp. EpRS71: Draft Genome Sequences from Two Bacteria Isolated from Echinacea purpurea Rhizospheric Soil.

Presta L, Fondi M, Perrin E, Maida I, Miceli E, Chiellini C, Maggini V, Bogani P, Di Pilato V, Rossolini GM, Mengoni A, Fani R.

Front Microbiol. 2016 Sep 12;7:1417. doi: 10.3389/fmicb.2016.01417. eCollection 2016. No abstract available.

36.

Essential Oil from Origanum vulgare Completely Inhibits the Growth of Multidrug-Resistant Cystic Fibrosis Pathogens.

Pesavento G, Maggini V, Maida I, Lo Nostro A, Calonico C, Sassoli C, Perrin E, Fondi M, Mengoni A, Chiellini C, Vannacci A, Gallo E, Gori L, Bogani P, Bilia AR, Campana S, Ravenni N, Dolce D, Firenzuoli F, Fani R.

Nat Prod Commun. 2016 Jun;11(6):861-4.

PMID:
27534136
37.

Draft Genome Sequences of the Antimicrobial Producers Pseudomonas sp. TAA207 and Pseudomonas sp. TAD18 Isolated from Antarctic Sediments.

Presta L, Inzucchi I, Bosi E, Fondi M, Perrin E, Maida I, Miceli E, Tutino ML, Lo Giudice A, de Pascale D, Fani R.

Genome Announc. 2016 Jul 28;4(4). pii: e00728-16. doi: 10.1128/genomeA.00728-16.

38.

A new method for long-term storage of titred microbial standard solutions suitable for microbiologic quality control activities of pharmaceutical companies.

Chiellini C, Mocali S, Fani R, Ferro I, Bruschi S, Pinzani A.

J Microbiol Methods. 2016 Aug;127:10-12. doi: 10.1016/j.mimet.2016.05.016. Epub 2016 May 18.

PMID:
27208663
39.

Draft Genome Sequence of Flavobacterium sp. Strain TAB 87, Able To Inhibit the Growth of Cystic Fibrosis Bacterial Pathogens Belonging to the Burkholderia cepacia Complex.

Presta L, Inzucchi I, Bosi E, Fondi M, Perrin E, Miceli E, Tutino ML, Lo Giudice A, de Pascale D, Fani R.

Genome Announc. 2016 May 19;4(3). pii: e00410-16. doi: 10.1128/genomeA.00410-16.

40.

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis.

Fondi M, Karkman A, Tamminen MV, Bosi E, Virta M, Fani R, Alm E, McInerney JO.

Genome Biol Evol. 2016 May 13;8(5):1388-400. doi: 10.1093/gbe/evw077.

41.

The antimicrobial potential of algicolous marine fungi for counteracting multidrug-resistant bacteria: phylogenetic diversity and chemical profiling.

Gnavi G, Palma Esposito F, Festa C, Poli A, Tedesco P, Fani R, Monti MC, de Pascale D, D'Auria MV, Varese GC.

Res Microbiol. 2016 Jul-Aug;167(6):492-500. doi: 10.1016/j.resmic.2016.04.009. Epub 2016 May 9.

42.

Draft Genome Sequence of Pseudomonas sp. EpS/L25, Isolated from the Medicinal Plant Echinacea purpurea and Able To Synthesize Antimicrobial Compounds.

Presta L, Bosi E, Fondi M, Maida I, Perrin E, Miceli E, Maggini V, Bogani P, Firenzuoli F, Di Pilato V, Rossolini GM, Mengoni A, Fani R.

Genome Announc. 2016 May 5;4(3). pii: e00346-16. doi: 10.1128/genomeA.00346-16.

43.

Antimicrobial Activity of Monoramnholipids Produced by Bacterial Strains Isolated from the Ross Sea (Antarctica).

Tedesco P, Maida I, Palma Esposito F, Tortorella E, Subko K, Ezeofor CC, Zhang Y, Tabudravu J, Jaspars M, Fani R, de Pascale D.

Mar Drugs. 2016 Apr 26;14(5). pii: E83. doi: 10.3390/md14050083.

44.

Draft genome sequence and overview of the purple non sulfur bacterium Rhodopseudomonas palustris 42OL.

Adessi A, Spini G, Presta L, Mengoni A, Viti C, Giovannetti L, Fani R, De Philippis R.

Stand Genomic Sci. 2016 Mar 9;11:24. doi: 10.1186/s40793-016-0145-y. eCollection 2016.

45.

Genomic and phenotypic characterization of the species Acinetobacter venetianus.

Fondi M, Maida I, Perrin E, Orlandini V, La Torre L, Bosi E, Negroni A, Zanaroli G, Fava F, Decorosi F, Giovannetti L, Viti C, Vaneechoutte M, Dijkshoorn L, Fani R.

Sci Rep. 2016 Feb 23;6:21985. doi: 10.1038/srep21985.

46.

Investigating the Role of the Host Multidrug Resistance Associated Protein Transporter Family in Burkholderia cepacia Complex Pathogenicity Using a Caenorhabditis elegans Infection Model.

Tedesco P, Visone M, Parrilli E, Tutino ML, Perrin E, Maida I, Fani R, Ballestriero F, Santos R, Pinilla C, Di Schiavi E, Tegos G, de Pascale D.

PLoS One. 2015 Nov 20;10(11):e0142883. doi: 10.1371/journal.pone.0142883. eCollection 2015.

47.

Analysis of a Pool of Small Plasmids from Soil Heterotrophic Cultivable Bacterial Communities.

Papaleo MC, Fondi M, Maida I, Perrin E, Bevivino A, Dalmastri C, Fani R.

Open Microbiol J. 2015 Aug 31;9:98-109. doi: 10.2174/1874285801509010098. eCollection 2015.

48.

Endophytic and rhizospheric bacterial communities isolated from the medicinal plants Echinacea purpurea and Echinacea angustifolia.

Chiellini C, Maida I, Emiliani G, Mengoni A, Mocali S, Fabiani A, Biffi S, Maggini V, Gori L, Vannacci A, Gallo E, Firenzuoli F, Fani R.

Int Microbiol. 2014 Sep;17(3):165-74. doi: 10.2436/20.1501.01.219.

49.

Efflux-mediated resistance to a benzothiadiazol derivative effective against Burkholderia cenocepacia.

Scoffone VC, Ryabova O, Makarov V, Iadarola P, Fumagalli M, Fondi M, Fani R, De Rossi E, Riccardi G, Buroni S.

Front Microbiol. 2015 Aug 5;6:815. doi: 10.3389/fmicb.2015.00815. eCollection 2015.

50.

Genomes analysis and bacteria identification: The use of overlapping genes as molecular markers.

Perrin E, Fondi M, Maida I, Mengoni A, Chiellini C, Mocali S, Cocchi P, Campana S, Taccetti G, Vaneechoutte M, Fani R.

J Microbiol Methods. 2015 Oct;117:108-12. doi: 10.1016/j.mimet.2015.07.025. Epub 2015 Jul 30.

PMID:
26235543

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