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Items: 16

1.

In situ genotyping of a pooled strain library after characterizing complex phenotypes.

Lawson MJ, Camsund D, Larsson J, Baltekin Ö, Fange D, Elf J.

Mol Syst Biol. 2017 Oct 17;13(10):947. doi: 10.15252/msb.20177951.

2.

Kinetics of dCas9 target search in Escherichia coli.

Jones DL, Leroy P, Unoson C, Fange D, Ćurić V, Lawson MJ, Elf J.

Science. 2017 Sep 29;357(6358):1420-1424. doi: 10.1126/science.aah7084. Epub 2017 Sep 28.

3.

The Synchronization of Replication and Division Cycles in Individual E. coli Cells.

Wallden M, Fange D, Lundius EG, Baltekin Ö, Elf J.

Cell. 2016 Jul 28;166(3):729-739. doi: 10.1016/j.cell.2016.06.052.

4.

Simulated single molecule microscopy with SMeagol.

Lindén M, Ćurić V, Boucharin A, Fange D, Elf J.

Bioinformatics. 2016 Aug 1;32(15):2394-5. doi: 10.1093/bioinformatics/btw109. Epub 2016 Mar 4.

5.

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid.

Sanamrad A, Persson F, Lundius EG, Fange D, Gynnå AH, Elf J.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11413-8. doi: 10.1073/pnas.1411558111. Epub 2014 Jul 23.

6.

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation.

Hammar P, Walldén M, Fange D, Persson F, Baltekin O, Ullman G, Leroy P, Elf J.

Nat Genet. 2014 Apr;46(4):405-8. doi: 10.1038/ng.2905. Epub 2014 Feb 23.

7.

Thermodynamic modeling of variations in the rate of RNA chain elongation of E. coli rrn operons.

Fange D, Mellenius H, Dennis PP, Ehrenberg M.

Biophys J. 2014 Jan 7;106(1):55-64. doi: 10.1016/j.bpj.2013.11.4487.

8.

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models.

Marklund EG, Mahmutovic A, Berg OG, Hammar P, van der Spoel D, Fange D, Elf J.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19796-801. doi: 10.1073/pnas.1307905110. Epub 2013 Nov 12.

9.

Lost in presumption: stochastic reactions in spatial models.

Mahmutovic A, Fange D, Berg OG, Elf J.

Nat Methods. 2012 Dec;9(12):1163-6. doi: 10.1038/nmeth.2253.

PMID:
23223170
10.

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit.

Fange D, Mahmutovic A, Elf J.

Bioinformatics. 2012 Dec 1;28(23):3155-7. doi: 10.1093/bioinformatics/bts584. Epub 2012 Oct 7.

PMID:
23044538
11.

Identification of enzyme inhibitory mechanisms from steady-state kinetics.

Fange D, Lovmar M, Pavlov MY, Ehrenberg M.

Biochimie. 2011 Sep;93(9):1623-9. doi: 10.1016/j.biochi.2011.05.031. Epub 2011 Jun 12.

PMID:
21689716
12.

Stochastic reaction-diffusion kinetics in the microscopic limit.

Fange D, Berg OG, Sjöberg P, Elf J.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19820-5. doi: 10.1073/pnas.1006565107. Epub 2010 Nov 1.

13.

Drug efflux pump deficiency and drug target resistance masking in growing bacteria.

Fange D, Nilsson K, Tenson T, Ehrenberg M.

Proc Natl Acad Sci U S A. 2009 May 19;106(20):8215-20. doi: 10.1073/pnas.0811514106. Epub 2009 May 1.

14.

Varying rate of RNA chain elongation during rrn transcription in Escherichia coli.

Dennis PP, Ehrenberg M, Fange D, Bremer H.

J Bacteriol. 2009 Jun;191(11):3740-6. doi: 10.1128/JB.00128-09. Epub 2009 Mar 27.

15.

Noise-induced Min phenotypes in E. coli.

Fange D, Elf J.

PLoS Comput Biol. 2006 Jun 30;2(6):e80. Epub 2006 May 18.

16.

Stochastic reaction-diffusion simulation with MesoRD.

Hattne J, Fange D, Elf J.

Bioinformatics. 2005 Jun 15;21(12):2923-4. Epub 2005 Apr 7.

PMID:
15817692

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