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Items: 1 to 50 of 60

1.

Injured Axons Instruct Schwann Cells to Build Constricting Actin Spheres to Accelerate Axonal Disintegration.

Vaquié A, Sauvain A, Duman M, Nocera G, Egger B, Meyenhofer F, Falquet L, Bartesaghi L, Chrast R, Lamy CM, Bang S, Lee SR, Jeon NL, Ruff S, Jacob C.

Cell Rep. 2019 Jun 11;27(11):3152-3166.e7. doi: 10.1016/j.celrep.2019.05.060.

2.

TASmania: A bacterial Toxin-Antitoxin Systems database.

Akarsu H, Bordes P, Mansour M, Bigot DJ, Genevaux P, Falquet L.

PLoS Comput Biol. 2019 Apr 25;15(4):e1006946. doi: 10.1371/journal.pcbi.1006946. eCollection 2019 Apr.

3.

Removal of a Subset of Non-essential Genes Fully Attenuates a Highly Virulent Mycoplasma Strain.

Jores J, Ma L, Ssajjakambwe P, Schieck E, Liljander A, Chandran S, Stoffel MH, Cippa V, Arfi Y, Assad-Garcia N, Falquet L, Sirand-Pugnet P, Blanchard A, Lartigue C, Posthaus H, Labroussaa F, Vashee S.

Front Microbiol. 2019 Apr 3;10:664. doi: 10.3389/fmicb.2019.00664. eCollection 2019.

4.

Reproduction of contagious caprine pleuropneumonia reveals the ability of convalescent sera to reduce hydrogen peroxide production in vitro.

Liljander A, Sacchini F, Stoffel MH, Schieck E, Stokar-Regenscheit N, Labroussaa F, Heller M, Salt J, Frey J, Falquet L, Goovaerts D, Jores J.

Vet Res. 2019 Feb 8;50(1):10. doi: 10.1186/s13567-019-0628-0.

5.

Suppressor mutations in Rpf2-Rrs1 or Rpl5 bypass the Cgr1 function for pre-ribosomal 5S RNP-rotation.

Thoms M, Mitterer V, Kater L, Falquet L, Beckmann R, Kressler D, Hurt E.

Nat Commun. 2018 Oct 5;9(1):4094. doi: 10.1038/s41467-018-06660-w.

6.

Corrigendum: Clostridium chauvoei, an Evolutionary Dead-End Pathogen.

Rychener L, In-Albon S, Djordjevic SP, Chowdhury PR, Nicholson P, Ziech RE, de Vargas AC, Frey J, Falquet L.

Front Microbiol. 2018 Mar 6;9:421. doi: 10.3389/fmicb.2018.00421. eCollection 2018.

7.

Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals.

Aguilar-Bultet L, Nicholson P, Rychener L, Dreyer M, Gözel B, Origgi FC, Oevermann A, Frey J, Falquet L.

Front Cell Infect Microbiol. 2018 Feb 5;8:20. doi: 10.3389/fcimb.2018.00020. eCollection 2018.

8.

Malaria infected red blood cells release small regulatory RNAs through extracellular vesicles.

Babatunde KA, Mbagwu S, Hernández-Castañeda MA, Adapa SR, Walch M, Filgueira L, Falquet L, Jiang RHY, Ghiran I, Mantel PY.

Sci Rep. 2018 Jan 17;8(1):884. doi: 10.1038/s41598-018-19149-9.

9.

Arsenic Methylation Dynamics in a Rice Paddy Soil Anaerobic Enrichment Culture.

Reid MC, Maillard J, Bagnoud A, Falquet L, Le Vo P, Bernier-Latmani R.

Environ Sci Technol. 2017 Sep 19;51(18):10546-10554. doi: 10.1021/acs.est.7b02970. Epub 2017 Sep 7.

PMID:
28825798
10.

Tropical soils degraded by slash-and-burn cultivation can be recultivated when amended with ashes and compost.

Gay-des-Combes JM, Sanz Carrillo C, Robroek BJM, Jassey VEJ, Mills RTE, Arif MS, Falquet L, Frossard E, Buttler A.

Ecol Evol. 2017 Jun 12;7(14):5378-5388. doi: 10.1002/ece3.3104. eCollection 2017 Jul.

11.

The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa.

Gros-Balthazard M, Galimberti M, Kousathanas A, Newton C, Ivorra S, Paradis L, Vigouroux Y, Carter R, Tengberg M, Battesti V, Santoni S, Falquet L, Pintaud JC, Terral JF, Wegmann D.

Curr Biol. 2017 Jul 24;27(14):2211-2218.e8. doi: 10.1016/j.cub.2017.06.045. Epub 2017 Jul 14.

12.

Clostridium chauvoei, an Evolutionary Dead-End Pathogen.

Rychener L, InAlbon S, Djordjevic SP, Chowdhury PR, Ziech RE, de Vargas AC, Frey J, Falquet L.

Front Microbiol. 2017 Jun 9;8:1054. doi: 10.3389/fmicb.2017.01054. eCollection 2017. Erratum in: Front Microbiol. 2018 Mar 06;9:421.

13.

Whole-Genome Sequence of a Colombian Acinetobacter baumannii Strain, a Coproducer of OXA-72 and OXA-255-Like Carbapenemases.

Saavedra SY, Prada-Cardozo D, Rincón V, Pérez-Cardona H, Hidalgo AM, González MN, Reguero MT, Valenzuela de Silva EM, Mantilla JR, Falquet L, Barreto-Hernández E, Duarte C.

Genome Announc. 2017 Feb 16;5(7). pii: e01558-16. doi: 10.1128/genomeA.01558-16.

14.

Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in α-Proteobacteria.

Ardissone S, Redder P, Russo G, Frandi A, Fumeaux C, Patrignani A, Schlapbach R, Falquet L, Viollier PH.

PLoS Genet. 2016 Dec 20;12(12):e1006499. doi: 10.1371/journal.pgen.1006499. eCollection 2016 Dec.

15.

The salivary microbiome for differentiating individuals: proof of principle.

Leake SL, Pagni M, Falquet L, Taroni F, Greub G.

Microbes Infect. 2016 Jun;18(6):399-405. doi: 10.1016/j.micinf.2016.03.011. Epub 2016 Apr 8.

16.

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen.

Ritpitakphong U, Falquet L, Vimoltust A, Berger A, Métraux JP, L'Haridon F.

New Phytol. 2016 May;210(3):1033-43. doi: 10.1111/nph.13808. Epub 2016 Jan 4.

17.

The Dedicated Chaperone Acl4 Escorts Ribosomal Protein Rpl4 to Its Nuclear Pre-60S Assembly Site.

Pillet B, García-Gómez JJ, Pausch P, Falquet L, Bange G, de la Cruz J, Kressler D.

PLoS Genet. 2015 Oct 8;11(10):e1005565. doi: 10.1371/journal.pgen.1005565. eCollection 2015 Oct.

18.

Field-Applicable Recombinase Polymerase Amplification Assay for Rapid Detection of Mycoplasma capricolum subsp. capripneumoniae.

Liljander A, Yu M, O'Brien E, Heller M, Nepper JF, Weibel DB, Gluecks I, Younan M, Frey J, Falquet L, Jores J.

J Clin Microbiol. 2015 Sep;53(9):2810-5. doi: 10.1128/JCM.00623-15. Epub 2015 Jun 17.

19.

The Petunia GRAS Transcription Factor ATA/RAM1 Regulates Symbiotic Gene Expression and Fungal Morphogenesis in Arbuscular Mycorrhiza.

Rich MK, Schorderet M, Bapaume L, Falquet L, Morel P, Vandenbussche M, Reinhardt D.

Plant Physiol. 2015 Jul;168(3):788-97. doi: 10.1104/pp.15.00310. Epub 2015 May 13.

20.

SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.

Leung WY, Marschall T, Paudel Y, Falquet L, Mei H, Schönhuth A, Maoz Moss TY.

BMC Genomics. 2015 Mar 25;16:238. doi: 10.1186/s12864-015-1376-9.

21.

Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.

Bertelli C, Aeby S, Chassot B, Clulow J, Hilfiker O, Rappo S, Ritzmann S, Schumacher P, Terrettaz C, Benaglio P, Falquet L, Farinelli L, Gharib WH, Goesmann A, Harshman K, Linke B, Miyazaki R, Rivolta C, Robinson-Rechavi M, van der Meer JR, Greub G.

Front Microbiol. 2015 Feb 19;6:101. doi: 10.3389/fmicb.2015.00101. eCollection 2015.

22.

A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants.

Favre P, Bapaume L, Bossolini E, Delorenzi M, Falquet L, Reinhardt D.

BMC Plant Biol. 2014 Dec 3;14:333. doi: 10.1186/s12870-014-0333-0.

23.

Patho-genetics of Clostridium chauvoei.

Frey J, Falquet L.

Res Microbiol. 2015 May;166(4):384-92. doi: 10.1016/j.resmic.2014.10.013. Epub 2014 Nov 4. Review.

24.

Complete Genome Sequences of Virulent Mycoplasma capricolum subsp. capripneumoniae Strains F38 and ILRI181.

Falquet L, Liljander A, Schieck E, Gluecks I, Frey J, Jores J.

Genome Announc. 2014 Oct 16;2(5). pii: e01041-14. doi: 10.1128/genomeA.01041-14.

25.

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef).

Cannarozzi G, Plaza-Wüthrich S, Esfeld K, Larti S, Wilson YS, Girma D, de Castro E, Chanyalew S, Blösch R, Farinelli L, Lyons E, Schneider M, Falquet L, Kuhlemeier C, Assefa K, Tadele Z.

BMC Genomics. 2014 Jul 9;15:581. doi: 10.1186/1471-2164-15-581.

26.

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.

Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, Gjoksi B, Goesmann A, Greub G, Harshman K, Linke B, Mikulic J, Mueller L, Nicolas D, Robinson-Rechavi M, Rivolta C, Roggo C, Roy S, Sentchilo V, Siebenthal AV, Falquet L, van der Meer JR.

Environ Microbiol. 2015 Jan;17(1):91-104. doi: 10.1111/1462-2920.12498. Epub 2014 May 28.

27.

Draft Genome Sequences of Multidrug-Resistant Acinetobacter sp. Strains from Colombian Hospitals.

Barreto-Hernández E, Falquet L, Reguero MT, Mantilla JR, Valenzuela EM, González E, Cepeda A, Escalante A.

Genome Announc. 2013 Nov 27;1(6). pii: e00868-13. doi: 10.1128/genomeA.00868-13.

28.

Draft Genome Sequence of the Virulent Clostridium chauvoei Reference Strain JF4335.

Falquet L, Calderon-Copete SP, Frey J.

Genome Announc. 2013 Aug 15;1(4). pii: e00593-13. doi: 10.1128/genomeA.00593-13.

29.

Draft Genome Sequence of the Virulent Avibacterium paragallinarum Serotype A Strain JF4211 and Identification of Two Toxins.

Aguilar-Bultet L, Calderon-Copete SP, Frey J, Falquet L.

Genome Announc. 2013 Aug 15;1(4). pii: e00592-13. doi: 10.1128/genomeA.00592-13.

30.

Short term evolution of a highly transmissible methicillin-resistant Staphylococcus aureus clone (ST228) in a tertiary care hospital.

Vogel V, Falquet L, Calderon-Copete SP, Basset P, Blanc DS.

PLoS One. 2012;7(6):e38969. doi: 10.1371/journal.pone.0038969. Epub 2012 Jun 18.

31.

Visualization and quality assessment of de novo genome assemblies.

Riba-Grognuz O, Keller L, Falquet L, Xenarios I, Wurm Y.

Bioinformatics. 2011 Dec 15;27(24):3425-6. doi: 10.1093/bioinformatics/btr569. Epub 2011 Oct 12.

PMID:
21994228
32.

Genome sequences of the high-acetic acid-resistant bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (reference strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (isolated from vinegar).

Andrés-Barrao C, Falquet L, Calderon-Copete SP, Descombes P, Ortega Pérez R, Barja F.

J Bacteriol. 2011 May;193(10):2670-1. doi: 10.1128/JB.00229-11. Epub 2011 Mar 25.

33.

The genome of the fire ant Solenopsis invicta.

Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt BG, Ingram KK, Falquet L, Nipitwattanaphon M, Gotzek D, Dijkstra MB, Oettler J, Comtesse F, Shih CJ, Wu WJ, Yang CC, Thomas J, Beaudoing E, Pradervand S, Flegel V, Cook ED, Fabbretti R, Stockinger H, Long L, Farmerie WG, Oakey J, Boomsma JJ, Pamilo P, Yi SV, Heinze J, Goodisman MA, Farinelli L, Harshman K, Hulo N, Cerutti L, Xenarios I, Shoemaker D, Keller L.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5679-84. doi: 10.1073/pnas.1009690108. Epub 2011 Jan 31.

34.

Genome-wide comparison of FGFRL1 with structurally related surface receptors.

Zhuang L, Falquet L, Trueb B.

Exp Ther Med. 2010 Jan;1(1):161-168. Epub 2010 Jan 1.

35.

The Mycoplasma conjunctivae genome sequencing, annotation and analysis.

Calderon-Copete SP, Wigger G, Wunderlin C, Schmidheini T, Frey J, Quail MA, Falquet L.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S7. doi: 10.1186/1471-2105-10-S6-S7.

36.

Unexpected vagaries of microsatellite loci in Glomus intraradices: length polymorphisms are rarely caused by variation in repeat number only.

Mathimaran N, Falquet L, Ineichen K, Picard C, Redecker D, Wiemken A, Boller T.

New Phytol. 2008;180(3):568-70. doi: 10.1111/j.1469-8137.2008.02649.x. No abstract available.

37.

Fourmidable: a database for ant genomics.

Wurm Y, Uva P, Ricci F, Wang J, Jemielity S, Iseli C, Falquet L, Keller L.

BMC Genomics. 2009 Jan 6;10:5. doi: 10.1186/1471-2164-10-5.

38.

PeroxiBase: a database with new tools for peroxidase family classification.

Koua D, Cerutti L, Falquet L, Sigrist CJ, Theiler G, Hulo N, Dunand C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D261-6. doi: 10.1093/nar/gkn680. Epub 2008 Oct 23.

39.

Experience using web services for biological sequence analysis.

Stockinger H, Attwood T, Chohan SN, Côté R, Cudré-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T, Pafilis E, Pagni M, Pettifer S, Phan I, Rahman N.

Brief Bioinform. 2008 Nov;9(6):493-505. doi: 10.1093/bib/bbn029. Epub 2008 Jul 11.

40.

Microsatellites for disentangling underground networks: strain-specific identification of Glomus intraradices, an arbuscular mycorrhizal fungus.

Mathimaran N, Falquet L, Ineichen K, Picard C, Redecker D, Boller T, Wiemken A.

Fungal Genet Biol. 2008 Jun;45(6):812-7. doi: 10.1016/j.fgb.2008.02.009. Epub 2008 Mar 10.

PMID:
18406181
41.

MyHits: improvements to an interactive resource for analyzing protein sequences.

Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W433-7. Epub 2007 Jun 1.

42.

PeroxiBase: the peroxidase database.

Passardi F, Theiler G, Zamocky M, Cosio C, Rouhier N, Teixera F, Margis-Pinheiro M, Ioannidis V, Penel C, Falquet L, Dunand C.

Phytochemistry. 2007 Jun;68(12):1605-11. Epub 2007 Jun 4.

PMID:
17544465
43.

Hunting for insect-specific protein domains.

Matute DR, Barreto-Hernandez E, Falquet L.

In Silico Biol. 2006;6(1-2):35-42.

PMID:
16789911
44.

PeroxiBase: a class III plant peroxidase database.

Bakalovic N, Passardi F, Ioannidis V, Cosio C, Penel C, Falquet L, Dunand C.

Phytochemistry. 2006 Mar;67(6):534-9. Epub 2006 Jan 26.

PMID:
16442574
45.

On ubiquitin ligases and cancer.

Beckmann JS, Maurer F, Delorenzi M, Falquet L.

Hum Mutat. 2005 Jun;25(6):507-12.

PMID:
15880746
47.

Transcript profiling suggests that differential metabolic adaptation of mice to a high fat diet is associated with changes in liver to muscle lipid fluxes.

de Fourmestraux V, Neubauer H, Poussin C, Farmer P, Falquet L, Burcelin R, Delorenzi M, Thorens B.

J Biol Chem. 2004 Dec 3;279(49):50743-53. Epub 2004 Sep 17.

48.

MyHits: a new interactive resource for protein annotation and domain identification.

Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Falquet L.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W332-5.

49.

Swiss EMBnet node web server.

Falquet L, Bordoli L, Ioannidis V, Pagni M, Jongeneel CV.

Nucleic Acids Res. 2003 Jul 1;31(13):3782-3.

50.

The InterPro Database, 2003 brings increased coverage and new features.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM.

Nucleic Acids Res. 2003 Jan 1;31(1):315-8.

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