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CNVmap: A Method and Software To Detect and Map Copy Number Variants from Segregation Data.

Falque M, Jebreen K, Paux E, Knaak C, Mezmouk S, Martin OC.

Genetics. 2020 Mar;214(3):561-576. doi: 10.1534/genetics.119.302881. Epub 2019 Dec 27.


Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude.

Fustier MA, Martínez-Ainsworth NE, Aguirre-Liguori JA, Venon A, Corti H, Rousselet A, Dumas F, Dittberner H, Camarena MG, Grimanelli D, Ovaskainen O, Falque M, Moreau L, de Meaux J, Montes-Hernández S, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI.

PLoS Genet. 2019 Dec 20;15(12):e1008512. doi: 10.1371/journal.pgen.1008512. eCollection 2019 Dec.


Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa.

Tourrette E, Bernardo R, Falque M, Martin OC.

G3 (Bethesda). 2019 Dec 3;9(12):4169-4181. doi: 10.1534/g3.119.400545.


A reference genome for pea provides insight into legume genome evolution.

Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J.

Nat Genet. 2019 Sep;51(9):1411-1422. doi: 10.1038/s41588-019-0480-1. Epub 2019 Sep 2.


Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis.

Termolino P, Falque M, Aiese Cigliano R, Cremona G, Paparo R, Ederveen A, Martin OC, Consiglio FM, Conicella C.

Plant J. 2019 Dec;100(6):1163-1175. doi: 10.1111/tpj.14505. Epub 2019 Oct 7.


Water Deficit-Responsive QTLs for Cell Wall Degradability and Composition in Maize at Silage Stage.

Virlouvet L, El Hage F, Griveau Y, Jacquemot MP, Gineau E, Baldy A, Legay S, Horlow C, Combes V, Bauland C, Palafre C, Falque M, Moreau L, Coursol S, Méchin V, Reymond M.

Front Plant Sci. 2019 Apr 25;10:488. doi: 10.3389/fpls.2019.00488. eCollection 2019.


Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids.

Martinez Palacios P, Jacquemot MP, Tapie M, Rousselet A, Diop M, Remoué C, Falque M, Lloyd A, Jenczewski E, Lassalle G, Chévre AM, Lelandais C, Crespi M, Brabant P, Joets J, Alix K.

Mol Biol Evol. 2019 Apr 1;36(4):709-726. doi: 10.1093/molbev/msz007.


X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression.

Courret C, Gérard PR, Ogereau D, Falque M, Moreau L, Montchamp-Moreau C.

Heredity (Edinb). 2019 Jun;122(6):906-915. doi: 10.1038/s41437-018-0163-1. Epub 2018 Dec 5.


Role of Cis, Trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae.

Raffoux X, Bourge M, Dumas F, Martin OC, Falque M.

Genetics. 2018 Dec;210(4):1213-1226. doi: 10.1534/genetics.118.301644. Epub 2018 Oct 5.


High-throughput measurement of recombination rates and genetic interference in Saccharomyces cerevisiae.

Raffoux X, Bourge M, Dumas F, Martin OC, Falque M.

Yeast. 2018 Jun;35(6):431-442. doi: 10.1002/yea.3315. Epub 2018 Apr 30.


Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups.

Giraud H, Bauland C, Falque M, Madur D, Combes V, Jamin P, Monteil C, Laborde J, Palaffre C, Gaillard A, Blanchard P, Charcosset A, Moreau L.

Genetics. 2017 Nov;207(3):1167-1180. doi: 10.1534/genetics.117.300305. Epub 2017 Sep 28.


Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.).

Giraud H, Bauland C, Falque M, Madur D, Combes V, Jamin P, Monteil C, Laborde J, Palaffre C, Gaillard A, Blanchard P, Charcosset A, Moreau L.

G3 (Bethesda). 2017 Nov 6;7(11):3649-3657. doi: 10.1534/g3.117.300121.


Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.

Pelé A, Falque M, Trotoux G, Eber F, Nègre S, Gilet M, Huteau V, Lodé M, Jousseaume T, Dechaumet S, Morice J, Poncet C, Coriton O, Martin OC, Rousseau-Gueutin M, Chèvre AM.

PLoS Genet. 2017 May 11;13(5):e1006794. doi: 10.1371/journal.pgen.1006794. eCollection 2017 May.


SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population.

Boutet G, Alves Carvalho S, Falque M, Peterlongo P, Lhuillier E, Bouchez O, Lavaud C, Pilet-Nayel ML, Rivière N, Baranger A.

BMC Genomics. 2016 Feb 18;17:121. doi: 10.1186/s12864-016-2447-2.


Recombination patterns in maize reveal limits to crossover homeostasis.

Sidhu GK, Fang C, Olson MA, Falque M, Martin OC, Pawlowski WP.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15982-7. doi: 10.1073/pnas.1514265112. Epub 2015 Dec 14.


Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.

Tayeh N, Aluome C, Falque M, Jacquin F, Klein A, Chauveau A, Bérard A, Houtin H, Rond C, Kreplak J, Boucherot K, Martin C, Baranger A, Pilet-Nayel ML, Warkentin TD, Brunel D, Marget P, Le Paslier MC, Aubert G, Burstin J.

Plant J. 2015 Dec;84(6):1257-73. doi: 10.1111/tpj.13070.


Dearth of polymorphism associated with a sustained response to selection for flowering time in maize.

Durand E, Tenaillon MI, Raffoux X, Thépot S, Falque M, Jamin P, Bourgais A, Ressayre A, Dillmann C.

BMC Evol Biol. 2015 Jun 7;15:103. doi: 10.1186/s12862-015-0382-5.


Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize.

Giraud H, Lehermeier C, Bauer E, Falque M, Segura V, Bauland C, Camisan C, Campo L, Meyer N, Ranc N, Schipprack W, Flament P, Melchinger AE, Menz M, Moreno-González J, Ouzunova M, Charcosset A, Schön CC, Moreau L.

Genetics. 2014 Dec;198(4):1717-34. doi: 10.1534/genetics.114.169367. Epub 2014 Sep 29.


Combined fluorescent and electron microscopic imaging unveils the specific properties of two classes of meiotic crossovers.

Anderson LK, Lohmiller LD, Tang X, Hammond DB, Javernick L, Shearer L, Basu-Roy S, Martin OC, Falque M.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13415-20. doi: 10.1073/pnas.1406846111. Epub 2014 Sep 2.


Crossover localisation is regulated by the neddylation posttranslational regulatory pathway.

Jahns MT, Vezon D, Chambon A, Pereira L, Falque M, Martin OC, Chelysheva L, Grelon M.

PLoS Biol. 2014 Aug 12;12(8):e1001930. doi: 10.1371/journal.pbio.1001930. eCollection 2014 Aug.


Contrasted patterns of crossover and non-crossover at Arabidopsis thaliana meiotic recombination hotspots.

Drouaud J, Khademian H, Giraut L, Zanni V, Bellalou S, Henderson IR, Falque M, Mézard C.

PLoS Genet. 2013 Nov;9(11):e1003922. doi: 10.1371/journal.pgen.1003922. Epub 2013 Nov 14.


Crossover rate between homologous chromosomes and interference are regulated by the addition of specific unpaired chromosomes in Brassica.

Suay L, Zhang D, Eber F, Jouy H, Lodé M, Huteau V, Coriton O, Szadkowski E, Leflon M, Martin OC, Falque M, Jenczewski E, Paillard S, Chèvre AM.

New Phytol. 2014 Jan;201(2):645-56. doi: 10.1111/nph.12534. Epub 2013 Oct 1.


Intraspecific variation of recombination rate in maize.

Bauer E, Falque M, Walter H, Bauland C, Camisan C, Campo L, Meyer N, Ranc N, Rincent R, Schipprack W, Altmann T, Flament P, Melchinger AE, Menz M, Moreno-González J, Ouzunova M, Revilla P, Charcosset A, Martin OC, Schön CC.

Genome Biol. 2013;14(9):R103.


Hot regions of noninterfering crossovers coexist with a nonuniformly interfering pathway in Arabidopsis thaliana.

Basu-Roy S, Gauthier F, Giraut L, Mézard C, Falque M, Martin OC.

Genetics. 2013 Nov;195(3):769-79. doi: 10.1534/genetics.113.155549. Epub 2013 Sep 11.


Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids.

Sarilar V, Palacios PM, Rousselet A, Ridel C, Falque M, Eber F, Chèvre AM, Joets J, Brabant P, Alix K.

New Phytol. 2013 Apr;198(2):593-604. doi: 10.1111/nph.12156. Epub 2013 Feb 6.


A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M.

PLoS One. 2011;6(12):e28334. doi: 10.1371/journal.pone.0028334. Epub 2011 Dec 8.


Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes.

Giraut L, Falque M, Drouaud J, Pereira L, Martin OC, Mézard C.

PLoS Genet. 2011 Nov;7(11):e1002354. doi: 10.1371/journal.pgen.1002354. Epub 2011 Nov 3.


The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions.

Virlouvet L, Jacquemot MP, Gerentes D, Corti H, Bouton S, Gilard F, Valot B, Trouverie J, Tcherkez G, Falque M, Damerval C, Rogowsky P, Perez P, Noctor G, Zivy M, Coursol S.

Plant Physiol. 2011 Oct;157(2):917-36. doi: 10.1104/pp.111.176818. Epub 2011 Aug 18.


Deciphering the genetics of flowering time by an association study on candidate genes in bread wheat (Triticum aestivum L.).

Rousset M, Bonnin I, Remoué C, Falque M, Rhoné B, Veyrieras JB, Madur D, Murigneux A, Balfourier F, Le Gouis J, Santoni S, Goldringer I.

Theor Appl Genet. 2011 Oct;123(6):907-26. doi: 10.1007/s00122-011-1636-2. Epub 2011 Jul 15.


CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes.

Gauthier F, Martin OC, Falque M.

BMC Bioinformatics. 2011 Jan 20;12:27. doi: 10.1186/1471-2105-12-27.


Genetic map construction and quantitative trait loci (QTL) mapping for nitrogen use efficiency and its relationship with productivity and quality of the biennial crop Belgian endive (Cichorium intybus L.).

Cassan L, Moreau L, Segouin S, Bellamy A, Falque M, Limami AM.

J Plant Physiol. 2010 Oct 15;167(15):1253-63. doi: 10.1016/j.jplph.2010.04.016. Epub 2010 Jul 8.


Recombination proteins mediate meiotic spatial chromosome organization and pairing.

Storlazzi A, Gargano S, Ruprich-Robert G, Falque M, David M, Kleckner N, Zickler D.

Cell. 2010 Apr 2;141(1):94-106. doi: 10.1016/j.cell.2010.02.041.


QTLs and candidate genes for desiccation and abscisic acid content in maize kernels.

Capelle V, Remoué C, Moreau L, Reyss A, Mahé A, Massonneau A, Falque M, Charcosset A, Thévenot C, Rogowsky P, Coursol S, Prioul JL.

BMC Plant Biol. 2010 Jan 4;10:2. doi: 10.1186/1471-2229-10-2.


Two types of meiotic crossovers coexist in maize.

Falque M, Anderson LK, Stack SM, Gauthier F, Martin OC.

Plant Cell. 2009 Dec;21(12):3915-25. doi: 10.1105/tpc.109.071514. Epub 2009 Dec 29.


Differential expression of candidate salt-tolerance genes in the halophyte Helianthus paradoxus and its glycophyte progenitors H. annuus and H. petiolaris (Asteraceae).

Edelist C, Raffoux X, Falque M, Dillmann C, Sicard D, Rieseberg LH, Karrenberg S.

Am J Bot. 2009 Oct;96(10):1830-8. doi: 10.3732/ajb.0900067. Epub 2009 Sep 17.


Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.).

Saintenac C, Falque M, Martin OC, Paux E, Feuillet C, Sourdille P.

Genetics. 2009 Feb;181(2):393-403. doi: 10.1534/genetics.108.097469. Epub 2008 Dec 8.


Sex-specific crossover distributions and variations in interference level along Arabidopsis thaliana chromosome 4.

Drouaud J, Mercier R, Chelysheva L, Bérard A, Falque M, Martin O, Zanni V, Brunel D, Mézard C.

PLoS Genet. 2007 Jun;3(6):e106. Epub 2007 May 15.


Patterns of recombination and MLH1 foci density along mouse chromosomes: modeling effects of interference and obligate chiasma.

Falque M, Mercier R, Mézard C, de Vienne D, Martin OC.

Genetics. 2007 Jul;176(3):1453-67. Epub 2007 May 4.


Maize Sh2 gene is constrained by natural selection but escaped domestication.

Manicacci D, Falque M, Le Guillou S, Piégu B, Henry AM, Le Guilloux M, Damerval C, De Vienne D.

J Evol Biol. 2007 Mar;20(2):503-16.


Molecular evolution of the Opaque-2 gene in Zea mays L.

Henry AM, Manicacci D, Falque M, Damerval C.

J Mol Evol. 2005 Oct;61(4):551-8. Epub 2005 Aug 24.


Linkage mapping of 1454 new maize candidate gene Loci.

Falque M, Décousset L, Dervins D, Jacob AM, Joets J, Martinant JP, Raffoux X, Ribière N, Ridel C, Samson D, Charcosset A, Murigneux A.

Genetics. 2005 Aug;170(4):1957-66. Epub 2005 Jun 3.


Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome.

Chardon F, Virlon B, Moreau L, Falque M, Joets J, Decousset L, Murigneux A, Charcosset A.

Genetics. 2004 Dec;168(4):2169-85.


Maize cytokinin oxidase genes: differential expression and cloning of two new cDNAs.

Massonneau A, Houba-Hérin N, Pethe C, Madzak C, Falque M, Mercy M, Kopecny D, Majira A, Rogowsky P, Laloue M.

J Exp Bot. 2004 Dec;55(408):2549-57. Epub 2004 Oct 8.


BioMercator: integrating genetic maps and QTL towards discovery of candidate genes.

Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J.

Bioinformatics. 2004 Sep 22;20(14):2324-6. Epub 2004 Apr 1.


ActionMap: A web-based software that automates loci assignments to framework maps.

Albini G, Falque M, Joets J.

Nucleic Acids Res. 2003 Jul 1;31(13):3815-8.


Genetic structure of a population sample of apomictic dandelions.

Van Der Hulst RG, Mes TH, Falque M, Stam P, Den Nijs JC, Bachmann K.

Heredity (Edinb). 2003 Apr;90(4):326-35.


Towards a better understanding of the genetic and physiological basis for nitrogen use efficiency in maize.

Hirel B, Bertin P, Quilleré I, Bourdoncle W, Attagnant C, Dellay C, Gouy A, Cadiou S, Retailliau C, Falque M, Gallais A.

Plant Physiol. 2001 Mar;125(3):1258-70.


Crosses between sexual and apomictic dandelions (Taraxacum). II. The breakdown of apomixis.

Van Dijk PJ, Tas IC, Falque M, Bakx-Schotman T.

Heredity (Edinb). 1999 Dec;83 ( Pt 6):715-21.


Isolation and characterization of microsatellites in Theobroma cacao L.

Lanaud C, Risterucci AM, Pieretti I, Falque M, Bouet A, Lagoda PJ.

Mol Ecol. 1999 Dec;8(12):2141-3. No abstract available.


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