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Growing and cultivating the forest genomics database, TreeGenes.

Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL.

Database (Oxford). 2019 Jan 1;2019. pii: baz043. doi: 10.1093/database/baz043. No abstract available.


Author Correction: U-Net: deep learning for cell counting, detection, and morphometry.

Falk T, Mai D, Bensch R, Çiçek Ö, Abdulkadir A, Marrakchi Y, Böhm A, Deubner J, Jäckel Z, Seiwald K, Dovzhenko A, Tietz O, Bosco CD, Walsh S, Saltukoglu D, Tay TL, Prinz M, Palme K, Simons M, Diester I, Brox T, Ronneberger O.

Nat Methods. 2019 Feb 25. doi: 10.1038/s41592-019-0356-4. [Epub ahead of print]


Fusion of Motif- and Spectrum-Related Features for Improved EEG-Based Emotion Recognition.

Tiwari A, Falk TH.

Comput Intell Neurosci. 2019 Jan 17;2019:3076324. doi: 10.1155/2019/3076324. eCollection 2019.


A Novel Angiotensin-(1-7) Glycosylated Mas Receptor Agonist for Treating Vascular Cognitive Impairment and Inflammation-Related Memory Dysfunction.

Hay M, Polt R, Heien ML, Vanderah TW, Largent-Milnes TM, Rodgers K, Falk T, Bartlett MJ, Doyle KP, Konhilas JP.

J Pharmacol Exp Ther. 2019 Apr;369(1):9-25. doi: 10.1124/jpet.118.254854. Epub 2019 Feb 1.


Functional near-infrared spectroscopy-based affective neurofeedback: feedback effect, illiteracy phenomena, and whole-connectivity profiles.

Trambaiolli LR, Biazoli CE Jr, Cravo AM, Falk TH, Sato JR.

Neurophotonics. 2018 Jul;5(3):035009. doi: 10.1117/1.NPh.5.3.035009. Epub 2018 Sep 18.


Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation.

Jordão MJC, Sankowski R, Brendecke SM, Sagar, Locatelli G, Tai YH, Tay TL, Schramm E, Armbruster S, Hagemeyer N, Groß O, Mai D, Çiçek Ö, Falk T, Kerschensteiner M, Grün D, Prinz M.

Science. 2019 Jan 25;363(6425). pii: eaat7554. doi: 10.1126/science.aat7554.


U-Net: deep learning for cell counting, detection, and morphometry.

Falk T, Mai D, Bensch R, Çiçek Ö, Abdulkadir A, Marrakchi Y, Böhm A, Deubner J, Jäckel Z, Seiwald K, Dovzhenko A, Tietz O, Dal Bosco C, Walsh S, Saltukoglu D, Tay TL, Prinz M, Palme K, Simons M, Diester I, Brox T, Ronneberger O.

Nat Methods. 2019 Jan;16(1):67-70. doi: 10.1038/s41592-018-0261-2. Epub 2018 Dec 17. Erratum in: Nat Methods. 2019 Feb 25;:.


Systematic Review on Resting-State EEG for Alzheimer's Disease Diagnosis and Progression Assessment.

Cassani R, Estarellas M, San-Martin R, Fraga FJ, Falk TH.

Dis Markers. 2018 Oct 4;2018:5174815. doi: 10.1155/2018/5174815. eCollection 2018.


Immunoglobulin E-Selective Immunoadsorption Reduces Peripheral and Skin-Bound Immunoglobulin E and Modulates Cutaneous IL-13 Expression in Severe Atopic Dermatitis.

Reich K, Hartjen A, Reich J, Schröder J, Steingrube N, Bresch M, Ertas B, Falk TM, Blödorn-Schlicht N, Jäckle S, Meier M.

J Invest Dermatol. 2019 Mar;139(3):720-723. doi: 10.1016/j.jid.2018.09.020. Epub 2018 Oct 24. No abstract available.


Editorial: NEUROTRAUMA: From Emergency Room to Back to Day-by-Day Life.

Anghinah R, Paiva WS, Falk TH, Fregni F.

Front Neurol. 2018 Sep 19;9:776. doi: 10.3389/fneur.2018.00776. eCollection 2018. No abstract available.


Growing and cultivating the forest genomics database, TreeGenes.

Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL.

Database (Oxford). 2018 Jan 1;2018:1-11. doi: 10.1093/database/bay084.


The combination of the opioid glycopeptide MMP-2200 and a NMDA receptor antagonist reduced l-DOPA-induced dyskinesia and MMP-2200 by itself reduced dopamine receptor 2-like agonist-induced dyskinesia.

Flores AJ, Bartlett MJ, Root BK, Parent KL, Heien ML, Porreca F, Polt R, Sherman SJ, Falk T.

Neuropharmacology. 2018 Oct;141:260-271. doi: 10.1016/j.neuropharm.2018.09.005. Epub 2018 Sep 7.


Early diagnosis of mild cognitive impairment and Alzheimer's with event-related potentials and event-related desynchronization in N-back working memory tasks.

Fraga FJ, Mamani GQ, Johns E, Tavares G, Falk TH, Phillips NA.

Comput Methods Programs Biomed. 2018 Oct;164:1-13. doi: 10.1016/j.cmpb.2018.06.011. Epub 2018 Jun 27.


Ten-Hour Exposure to Low-Dose Ketamine Enhances Corticostriatal Cross-Frequency Coupling and Hippocampal Broad-Band Gamma Oscillations.

Ye T, Bartlett MJ, Schmit MB, Sherman SJ, Falk T, Cowen SL.

Front Neural Circuits. 2018 Aug 13;12:61. doi: 10.3389/fncir.2018.00061. eCollection 2018.


A PLA-iRoCS Pipeline for the Localization of Protein-Protein Interactions In Situ.

Pasternak T, Teale W, Falk T, Ruperti B, Palme K.

Methods Mol Biol. 2018;1787:161-170. doi: 10.1007/978-1-4939-7847-2_12.


Comparative Transcriptomics Among Four White Pine Species.

Baker EAG, Wegrzyn JL, Sezen UU, Falk T, Maloney PE, Vogler DR, Delfino-Mix A, Jensen C, Mitton J, Wright J, Knaus B, Rai H, Cronn R, Gonzalez-Ibeas D, Vasquez-Gross HA, Famula RA, Liu JJ, Kueppers LM, Neale DB.

G3 (Bethesda). 2018 May 4;8(5):1461-1474. doi: 10.1534/g3.118.200257.


Electroencephalography Amplitude Modulation Analysis for Automated Affective Tagging of Music Video Clips.

Clerico A, Tiwari A, Gupta R, Jayaraman S, Falk TH.

Front Comput Neurosci. 2018 Jan 10;11:115. doi: 10.3389/fncom.2017.00115. eCollection 2017.


Spectro-Temporal Electrocardiogram Analysis for Noise-Robust Heart Rate and Heart Rate Variability Measurement.

Tobon DP, Jayaraman S, Falk TH.

IEEE J Transl Eng Health Med. 2017 Dec 4;5:1900611. doi: 10.1109/JTEHM.2017.2767603. eCollection 2017.


Modeling Speech Level as a Function of Background Noise Level and Talker-to-Listener Distance for Talkers Wearing Hearing Protection Devices.

Bouserhal RE, Bockstael A, MacDonald E, Falk TH, Voix J.

J Speech Lang Hear Res. 2017 Dec 20;60(12):3393-3403. doi: 10.1044/2017_JSLHR-S-17-0052.


Mental Task Evaluation for Hybrid NIRS-EEG Brain-Computer Interfaces.

Banville H, Gupta R, Falk TH.

Comput Intell Neurosci. 2017;2017:3524208. doi: 10.1155/2017/3524208. Epub 2017 Oct 18.


A 3D digital atlas of the Nicotiana tabacum root tip and its use to investigate changes in the root apical meristem induced by the Agrobacterium 6b oncogene.

Pasternak T, Haser T, Falk T, Ronneberger O, Palme K, Otten L.

Plant J. 2017 Oct;92(1):31-42. doi: 10.1111/tpj.13631. Epub 2017 Aug 11.


Insights into the Mechanisms Involved in Protective Effects of VEGF-B in Dopaminergic Neurons.

Caballero B, Sherman SJ, Falk T.

Parkinsons Dis. 2017;2017:4263795. doi: 10.1155/2017/4263795. Epub 2017 Apr 3. Review.


In-ear microphone speech quality enhancement via adaptive filtering and artificial bandwidth extension.

Bouserhal RE, Falk TH, Voix J.

J Acoust Soc Am. 2017 Mar;141(3):1321. doi: 10.1121/1.4976051.


Challenges, dilemmas, and quality criteria for safety reviews.

Rollenhagen C, Falk T, Hansson SO.

J Radiol Prot. 2017 Mar 20;37(1):279-295. doi: 10.1088/1361-6498/37/1/279.


Markers of Oxidative Stress in Dogs with Myxomatous Mitral Valve Disease are Influenced by Sex, Neuter Status, and Serum Cholesterol Concentration.

Reimann MJ, Häggström J, Møller JE, Lykkesfeldt J, Falk T, Olsen LH.

J Vet Intern Med. 2017 Mar;31(2):295-302. doi: 10.1111/jvim.14647. Epub 2017 Jan 29.


An intensified dosing schedule of subcutaneous methotrexate in patients with moderate to severe plaque-type psoriasis (METOP): a 52 week, multicentre, randomised, double-blind, placebo-controlled, phase 3 trial.

Warren RB, Mrowietz U, von Kiedrowski R, Niesmann J, Wilsmann-Theis D, Ghoreschi K, Zschocke I, Falk TM, Blödorn-Schlicht N, Reich K.

Lancet. 2017 Feb 4;389(10068):528-537. doi: 10.1016/S0140-6736(16)32127-4. Epub 2016 Dec 22.


Adaptive Spectro-Temporal Filtering for Electrocardiogram Signal Enhancement.

Tobon DP, Falk TH.

IEEE J Biomed Health Inform. 2018 Mar;22(2):421-428. doi: 10.1109/JBHI.2016.2638120. Epub 2016 Dec 9.


Effect of Body Weight on Echocardiographic Measurements in 19,866 Pure-Bred Cats with or without Heart Disease.

Häggström J, Andersson ÅO, Falk T, Nilsfors L, OIsson U, Kresken JG, Höglund K, Rishniw M, Tidholm A, Ljungvall I.

J Vet Intern Med. 2016 Sep;30(5):1601-1611. doi: 10.1111/jvim.14569. Epub 2016 Aug 30.


Case Reports Showing a Long-Term Effect of Subanesthetic Ketamine Infusion in Reducing l-DOPA-Induced Dyskinesias.

Sherman SJ, Estevez M, Magill AB, Falk T.

Case Rep Neurol. 2016 Feb 26;8(1):53-8. doi: 10.1159/000444278. eCollection 2016 Jan-Apr.


Increased serum C-reactive protein concentrations in dogs with congestive heart failure due to myxomatous mitral valve disease.

Reimann MJ, Ljungvall I, Hillström A, Møller JE, Hagman R, Falk T, Höglund K, Häggström J, Olsen LH.

Vet J. 2016 Mar;209:113-8. doi: 10.1016/j.tvjl.2015.12.006. Epub 2015 Dec 22.


Variations in voice level and fundamental frequency with changing background noise level and talker-to-listener distance while wearing hearing protectors: A pilot study.

Bouserhal RE, Macdonald EN, Falk TH, Voix J.

Int J Audiol. 2016;55 Suppl 1:S13-20. doi: 10.3109/14992027.2015.1122240. Epub 2016 Jan 14.


Long-term effect of sub-anesthetic ketamine in reducing L-DOPA-induced dyskinesias in a preclinical model.

Bartlett MJ, Joseph RM, LePoidevin LM, Parent KL, Laude ND, Lazarus LB, Heien ML, Estevez M, Sherman SJ, Falk T.

Neurosci Lett. 2016 Jan 26;612:121-125. doi: 10.1016/j.neulet.2015.11.047. Epub 2015 Nov 28.


Fast, sensitive and specific diagnosis of infections with Leishmania spp. in formalin-fixed, paraffin-embedded skin biopsies by cytochrome b polymerase chain reaction.

Gebhardt M, Ertas B, Falk TM, Blödorn-Schlicht N, Metze D, Böer-Auer A.

Br J Dermatol. 2015 Nov;173(5):1239-49. doi: 10.1111/bjd.14088. Epub 2015 Oct 23.


Histopathology and immunophenotype of acrodermatitis chronica atrophicans correlated with ospA and ospC genotypes of Borrelia species.

Brandt FC, Ertas B, Falk TM, Metze D, Böer-Auer A.

J Cutan Pathol. 2015 Oct;42(10):674-92. doi: 10.1111/cup.12550. Epub 2015 Aug 10.


Objective Quality and Intelligibility Prediction for Users of Assistive Listening Devices.

Falk TH, Parsa V, Santos JF, Arehart K, Hazrati O, Huber R, Kates JM, Scollie S.

IEEE Signal Process Mag. 2015 Mar;32(2):114-124.


Alpha-smooth muscle actin and serotonin receptors 2A and 2B in dogs with myxomatous mitral valve disease.

Cremer SE, Moesgaard SG, Rasmussen CE, Zois NE, Falk T, Reimann MJ, Cirera S, Aupperle H, Oyama MA, Olsen LH.

Res Vet Sci. 2015 Jun;100:197-206. doi: 10.1016/j.rvsc.2015.03.020. Epub 2015 Mar 19.


Evidence that a neutrophil-keratinocyte crosstalk is an early target of IL-17A inhibition in psoriasis.

Reich K, Papp KA, Matheson RT, Tu JH, Bissonnette R, Bourcier M, Gratton D, Kunynetz RA, Poulin Y, Rosoph LA, Stingl G, Bauer WM, Salter JM, Falk TM, Blödorn-Schlicht NA, Hueber W, Sommer U, Schumacher MM, Peters T, Kriehuber E, Lee DM, Wieczorek GA, Kolbinger F, Bleul CC.

Exp Dermatol. 2015 Jul;24(7):529-35. doi: 10.1111/exd.12710. Epub 2015 May 8.


Severe ulcerative penile leishmaniasis--Importance of PCR-based diagnostics.

Herbert VG, Böer-Auer A, Brandenburg A, Falk TM, Reiter-Owona I, Rockstroh JK, Reich K.

J Infect. 2015 Jul;71(1):139-41. doi: 10.1016/j.jinf.2015.02.009. Epub 2015 Feb 26. No abstract available.


Serotonin markers show altered transcription levels in an experimental pig model of mitral regurgitation.

Cremer SE, Zois NE, Moesgaard SG, Ravn N, Cirera S, Honge JL, Smerup MH, Hasenkam JM, Sloth E, Leifsson PS, Falk T, Oyama MA, Orton C, Martinussen T, Olsen LH.

Vet J. 2015 Feb;203(2):192-8. doi: 10.1016/j.tvjl.2014.12.016. Epub 2014 Dec 23.


Matrix metalloproteinases (MMPs), tissue inhibitors of metalloproteinases (TIMPs) and transforming growth factor-β (TGF-β) in advanced canine myxomatous mitral valve disease.

Moesgaard SG, Aupperle H, Rajamäki MM, Falk T, Rasmussen CE, Zois NE, Olsen LH.

Res Vet Sci. 2014 Dec;97(3):560-7. doi: 10.1016/j.rvsc.2014.10.003. Epub 2014 Oct 13.


Associations between N-terminal procollagen type III, fibrosis and echocardiographic indices in dogs that died due to myxomatous mitral valve disease.

Hezzell MJ, Falk T, Olsen LH, Boswood A, Elliott J.

J Vet Cardiol. 2014 Dec;16(4):257-64. doi: 10.1016/j.jvc.2014.08.002. Epub 2014 Sep 16.


Biopterin status in dogs with myxomatous mitral valve disease is associated with disease severity and cardiovascular risk factors.

Reimann MJ, Häggström J, Mortensen A, Lykkesfeldt J, Møller JE, Falk T, Olsen LH.

J Vet Intern Med. 2014 Sep-Oct;28(5):1520-6. doi: 10.1111/jvim.12425.


A model that predicts the binaural advantage to speech intelligibility from the mixed target and interferer signals.

Cosentino S, Marquardt T, McAlpine D, Culling JF, Falk TH.

J Acoust Soc Am. 2014 Feb;135(2):796-807. doi: 10.1121/1.4861239.


MS-QI: A Modulation Spectrum-Based ECG Quality Index for Telehealth Applications.

Tobon V DP, Falk TH, Maier M.

IEEE Trans Biomed Eng. 2016 Aug;63(8):1613-22. doi: 10.1109/TBME.2014.2355135. Epub 2014 Sep 5.


Performance measurement for brain-computer or brain-machine interfaces: a tutorial.

Thompson DE, Quitadamo LR, Mainardi L, Laghari KU, Gao S, Kindermans PJ, Simeral JD, Fazel-Rezai R, Matteucci M, Falk TH, Bianchi L, Chestek CA, Huggins JE.

J Neural Eng. 2014 Jun;11(3):035001. doi: 10.1088/1741-2560/11/3/035001. Epub 2014 May 19.


Strong association between activated valvular interstitial cells and histopathological lesions in porcine model of induced mitral regurgitation.

Cremer SE, Zois NE, Moesgaard SG, Ravn N, Cirera S, Honge JL, Smerup MH, Hasenkam JM, Sloth E, Leifsson PS, Falk T, Oyama MA, Orton C, Martinussen T, Olsen LH.

Int J Cardiol. 2014 Jun 15;174(2):443-6. doi: 10.1016/j.ijcard.2014.04.022. Epub 2014 Apr 13. No abstract available.


The effects of automated artifact removal algorithms on electroencephalography-based Alzheimer's disease diagnosis.

Cassani R, Falk TH, Fraga FJ, Kanda PA, Anghinah R.

Front Aging Neurosci. 2014 Mar 25;6:55. doi: 10.3389/fnagi.2014.00055. eCollection 2014.


Differential effects of the NMDA receptor antagonist MK-801 on dopamine receptor D1- and D2-induced abnormal involuntary movements in a preclinical model.

Flores AJ, Bartlett MJ, So LY, Laude ND, Parent KL, Heien ML, Sherman SJ, Falk T.

Neurosci Lett. 2014 Apr 3;564:48-52. doi: 10.1016/j.neulet.2014.02.004. Epub 2014 Feb 11.


R-R interval variations influence the degree of mitral regurgitation in dogs with myxomatous mitral valve disease.

Reimann MJ, Møller JE, Häggström J, Markussen B, Holen AE, Falk T, Olsen LH.

Vet J. 2014 Mar;199(3):348-54. doi: 10.1016/j.tvjl.2014.01.001. Epub 2014 Jan 11.


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