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Items: 46

1.

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.

Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A.

Proteins. 2020 Mar;88(3):540. doi: 10.1002/prot.25867. Epub 2020 Jan 3. No abstract available.

PMID:
31977133
2.

Microwave tomography with phaseless data on the calcaneus by means of artificial neural networks.

Fajardo JE, Lotto FP, Vericat F, Carlevaro CM, Irastorza RM.

Med Biol Eng Comput. 2020 Feb;58(2):433-442. doi: 10.1007/s11517-019-02090-y. Epub 2019 Dec 20.

PMID:
31863248
3.

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.

Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A.

Proteins. 2019 Dec;87(12):1283-1297. doi: 10.1002/prot.25816. Epub 2019 Oct 7. Erratum in: Proteins. 2020 Mar;88(3):540.

PMID:
31569265
4.

Effect of the trabecular bone microstructure on measuring its thermal conductivity: A computer modeling-based study.

Fajardo JE, Carlevaro CM, Vericat F, Berjano E, Irastorza RM.

J Therm Biol. 2018 Oct;77:131-136. doi: 10.1016/j.jtherbio.2018.08.009. Epub 2018 Aug 19.

PMID:
30196891
5.

Genetic resistance to purine nucleoside phosphorylase inhibition in Plasmodium falciparum.

Ducati RG, Namanja-Magliano HA, Harijan RK, Fajardo JE, Fiser A, Daily JP, Schramm VL.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2114-2119. doi: 10.1073/pnas.1525670115. Epub 2018 Feb 12.

6.

HIV-Tat regulates macrophage gene expression in the context of neuroAIDS.

Carvallo L, Lopez L, Fajardo JE, Jaureguiberry-Bravo M, Fiser A, Berman JW.

PLoS One. 2017 Jun 22;12(6):e0179882. doi: 10.1371/journal.pone.0179882. eCollection 2017.

7.

Glomus tumor in teen and repetition pneumonia: Case report.

Pardo SS, Duque J, Fajardo JE.

Respir Med Case Rep. 2016 Oct 7;19:169-172. eCollection 2016.

8.

Crk at the quarter century mark: perspectives in signaling and cancer.

Kumar S, Fajardo JE, Birge RB, Sriram G.

J Cell Biochem. 2014 May;115(5):819-25. doi: 10.1002/jcb.24749.

PMID:
24356912
9.

Protein structure based prediction of catalytic residues.

Fajardo JE, Fiser A.

BMC Bioinformatics. 2013 Feb 22;14:63. doi: 10.1186/1471-2105-14-63.

10.

Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.

Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK.

Proteins. 2010 Nov 1;78(14):3056-62. doi: 10.1002/prot.22829. No abstract available.

11.

PSI-2: structural genomics to cover protein domain family space.

Dessailly BH, Nair R, Jaroszewski L, Fajardo JE, Kouranov A, Lee D, Fiser A, Godzik A, Rost B, Orengo C.

Structure. 2009 Jun 10;17(6):869-81. doi: 10.1016/j.str.2009.03.015. Review.

12.

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.

Fernandez-Fuentes N, Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A.

Bioinformatics. 2007 Oct 1;23(19):2558-65. Epub 2007 Sep 6.

PMID:
17823132
13.

M4T: a comparative protein structure modeling server.

Fernandez-Fuentes N, Madrid-Aliste CJ, Rai BK, Fajardo JE, Fiser A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W363-8. Epub 2007 May 21.

14.

Childhood bullous pemphigoid: a case report and 10-year follow up.

Sáenz AM, González F, Cirocco A, Tacaronte IM, Fajardo JE, Calebotta A.

Int J Dermatol. 2007 May;46(5):508-10.

PMID:
17472685
15.

Kawasaki disease with coronary artery sequelae.

Hibbard JU, Fajardo JE, Briller J.

Obstet Gynecol. 2007 Feb;109(2 Pt2):517-9.

PMID:
17267879
16.

MMM: a sequence-to-structure alignment protocol.

Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A.

Bioinformatics. 2006 Nov 1;22(21):2691-2. Epub 2006 Aug 23.

PMID:
16928737
17.

Endemic pemphigus foliaceus in Venezuela: report of two children.

González F, Sáenz AM, Cirocco A, Tacaronte IM, Fajardo JE, Calebotta A.

Pediatr Dermatol. 2006 Mar-Apr;23(2):132-5.

PMID:
16650220
18.

Pentapeptide repeat proteins.

Vetting MW, Hegde SS, Fajardo JE, Fiser A, Roderick SL, Takiff HE, Blanchard JS.

Biochemistry. 2006 Jan 10;45(1):1-10.

19.

Transactivation of Abl by the Crk II adapter protein requires a PNAY sequence in the Crk C-terminal SH3 domain.

Reichman C, Singh K, Liu Y, Singh S, Li H, Fajardo JE, Fiser A, Birge RB.

Oncogene. 2005 Dec 8;24(55):8187-99.

PMID:
16158059
20.

High-throughput computational and experimental techniques in structural genomics.

Chance MR, Fiser A, Sali A, Pieper U, Eswar N, Xu G, Fajardo JE, Radhakannan T, Marinkovic N.

Genome Res. 2004 Oct;14(10B):2145-54.

21.

A novel role for the immunophilin FKBP52 in copper transport.

Sanokawa-Akakura R, Dai H, Akakura S, Weinstein D, Fajardo JE, Lang SE, Wadsworth S, Siekierka J, Birge RB.

J Biol Chem. 2004 Jul 2;279(27):27845-8. Epub 2004 May 7.

22.

Activation of the focal adhesion kinase signaling pathway by structural alterations in the carboxyl-terminal region of c-Crk II.

Zvara A, Fajardo JE, Escalante M, Cotton G, Muir T, Kirsch KH, Birge RB.

Oncogene. 2001 Feb 22;20(8):951-61.

23.

Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.

Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T.

Nat Genet. 2001 Mar;27(3):337-40.

PMID:
11242120
24.

Phosphorylation of c-Crk II on the negative regulatory Tyr222 mediates nerve growth factor-induced cell spreading and morphogenesis.

Escalante M, Courtney J, Chin WG, Teng KK, Kim JI, Fajardo JE, Mayer BJ, Hempstead BL, Birge RB.

J Biol Chem. 2000 Aug 11;275(32):24787-97.

26.

Expression of the v-crk oncogene product in PC12 cells results in rapid differentiation by both nerve growth factor- and epidermal growth factor-dependent pathways.

Hempstead BL, Birge RB, Fajardo JE, Glassman R, Mahadeo D, Kraemer R, Hanafusa H.

Mol Cell Biol. 1994 Mar;14(3):1964-71.

27.

A 31-amino-acid N-terminal extension regulates c-Crk binding to tyrosine-phosphorylated proteins.

Fajardo JE, Birge RB, Hanafusa H.

Mol Cell Biol. 1993 Dec;13(12):7295-302.

28.

False-negative urine latex particle agglutination testing in neonates with group B streptococcal bacteremia. A function of improper test implementation?

Becker JA, Ascher DP, Mendiola J, Yoder B, Weisse M, Waecker N, Heroman WM, Davis C, Fajardo JE, Fischer GW.

Clin Pediatr (Phila). 1993 Aug;32(8):467-71.

PMID:
8403745
29.

Identification and characterization of a high-affinity interaction between v-Crk and tyrosine-phosphorylated paxillin in CT10-transformed fibroblasts.

Birge RB, Fajardo JE, Reichman C, Shoelson SE, Songyang Z, Cantley LC, Hanafusa H.

Mol Cell Biol. 1993 Aug;13(8):4648-56.

30.

Antimicrobial treatment of occult bacteremia: a multicenter cooperative study.

Bass JW, Steele RW, Wittler RR, Weisse ME, Bell V, Heisser AH, Brien JH, Fajardo JE, Wasserman GM, Vincent JM, et al.

Pediatr Infect Dis J. 1993 Jun;12(6):466-73.

PMID:
8345978
31.

Failure of intrapartum antibiotics to prevent culture-proved neonatal group B streptococcal sepsis.

Ascher DP, Becker JA, Yoder BA, Weisse M, Waecker NJ, Heroman WM, Davis C, Fajardo JE, Fischer GW.

J Perinatol. 1993 May-Jun;13(3):212-6.

PMID:
8345385
32.
34.

Comparison of mupirocin and erythromycin in the treatment of impetigo.

Britton JW, Fajardo JE, Krafte-Jacobs B.

J Pediatr. 1990 Nov;117(5):827-9. No abstract available.

PMID:
2121951
35.
36.

Effects of elongation on the translation of a reovirus bicistronic mRNA.

Fajardo JE, Shatkin AJ.

Enzyme. 1990;44(1-4):235-43.

PMID:
1966840
37.

Tropical splenomegaly syndrome associated with cytomegalovirus infection.

Wasserman GM, Fajardo JE, Bass JW, Cook BA, Brooks VB.

Mil Med. 1989 Mar;154(3):128-30.

PMID:
2540453
38.

Inappropriate antidiuretic hormone in children with viral meningitis.

Fajardo JE, Stafford EM, Bass JW, Roscelli JD, Sato AK, Claybaugh JR.

Pediatr Neurol. 1989 Jan-Feb;5(1):37-40.

PMID:
2712937
39.

Pleural empyema in children: a nationwide retrospective study.

Fajardo JE, Chang MJ.

South Med J. 1987 May;80(5):593-6.

PMID:
3495039
40.

Suppurative arthritis and hemophilia.

Fajardo JE, Mickunas VH, deTriquet JM.

Pediatr Infect Dis. 1986 Sep-Oct;5(5):593-4. No abstract available.

PMID:
3763423
41.

Sudden death due to acute epiglottitis.

Bass JW, Fajardo JE, Brien JH, Cook BA, Wiswell TE.

Pediatr Infect Dis. 1985 Sep-Oct;4(5):447-9. No abstract available.

PMID:
3876546
42.

Oral dicloxacillin for the treatment of neonatal osteomyelitis.

Fajardo JE, Bass JW, Lugo EJ, Rawlings JS.

Am J Dis Child. 1984 Oct;138(10):991. No abstract available.

PMID:
6475863
43.

Congenital toxoplasmosis in triplets.

Wiswell TE, Fajardo JE, Bass JW, Brien JH, Forstein SH.

J Pediatr. 1984 Jul;105(1):59-61. No abstract available.

PMID:
6539819
44.

Association of Yersinia enterocolitica and appendicitis: a negative report from Hawaii.

Fajardo JE, Bass JW, Barcia PJ, Ohashi DK.

Pediatr Infect Dis. 1984 Jul-Aug;3(4):369. No abstract available.

PMID:
6473141
45.

Phylogeny of transfer RNA.

Rodriguez-Vargas AM, Fajardo JE, Ramirez BC.

Orig Life. 1984;14(1-4):547-55.

PMID:
6565246
46.

Chronic meningitis, polyarthritis, lymphadenitis, and pulmonary hemosiderosis.

Fajardo JE, Geller TJ, Koenig HM, Kleine ML.

J Pediatr. 1982 Nov;101(5):738-40. No abstract available.

PMID:
7131150

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