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Items: 1 to 50 of 91

1.

Challenges in IBD Research: Preclinical Human IBD Mechanisms.

Pizarro TT, Stappenbeck TS, Rieder F, Rosen MJ, Colombel JF, Donowitz M, Towne J, Mazmanian SK, Faith JJ, Hodin RA, Garrett WS, Fichera A, Poritz LS, Cortes CJ, Shtraizent N, Honig G, Snapper SB, Hurtado-Lorenzo A, Salzman NH, Chang EB.

Inflamm Bowel Dis. 2019 May 16;25(Supplement_2):S5-S12. doi: 10.1093/ibd/izz075.

PMID:
31095706
2.

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders.

Saffouri GB, Shields-Cutler RR, Chen J, Yang Y, Lekatz HR, Hale VL, Cho JM, Battaglioli EJ, Bhattarai Y, Thompson KJ, Kalari KK, Behera G, Berry JC, Peters SA, Patel R, Schuetz AN, Faith JJ, Camilleri M, Sonnenburg JL, Farrugia G, Swann JR, Grover M, Knights D, Kashyap PC.

Nat Commun. 2019 May 1;10(1):2012. doi: 10.1038/s41467-019-09964-7.

3.

Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice.

Torres J, Hu J, Seki A, Eisele C, Nair N, Huang R, Tarassishin L, Jharap B, Cote-Daigneault J, Mao Q, Mogno I, Britton GJ, Uzzan M, Chen CL, Kornbluth A, George J, Legnani P, Maser E, Loudon H, Stone J, Dubinsky M, Faith JJ, Clemente JC, Mehandru S, Colombel JF, Peter I.

Gut. 2019 Apr 29. pii: gutjnl-2018-317855. doi: 10.1136/gutjnl-2018-317855. [Epub ahead of print]

PMID:
31036757
4.

Notes from the Field: Investigation of Colorado Tick Fever Virus Disease Cases - Oregon, 2018.

McDonald E, George D, Rekant S, Curren E, DeBess E, Hedberg K, Lutz J, Faith J, Kaisner H, Fawcett R, Sherer R, Kanyuch R, Gudmundsson A, Gardner N, Salt M, Kosoy O, Velez J, Staples E, Fischer M, Gould C.

MMWR Morb Mortal Wkly Rep. 2019 Mar 29;68(12):289-290. doi: 10.15585/mmwr.mm6812a4. No abstract available.

5.

Microbial Engraftment and Efficacy of Fecal Microbiota Transplant for Clostridium Difficile in Patients With and Without Inflammatory Bowel Disease.

Hirten RP, Grinspan A, Fu SC, Luo Y, Suarez-Farinas M, Rowland J, Contijoch EJ, Mogno I, Yang N, Luong T, Labrias PR, Peter I, Cho JH, Sands BE, Colombel JF, Faith JJ, Clemente JC.

Inflamm Bowel Dis. 2019 May 4;25(6):969-979. doi: 10.1093/ibd/izy398.

PMID:
30852592
6.

The gut microbiota composition affects dietary polyphenols-mediated cognitive resilience in mice by modulating the bioavailability of phenolic acids.

Frolinger T, Sims S, Smith C, Wang J, Cheng H, Faith J, Ho L, Hao K, Pasinetti GM.

Sci Rep. 2019 Mar 5;9(1):3546. doi: 10.1038/s41598-019-39994-6.

7.

Gut microbiota density influences host physiology and is shaped by host and microbial factors.

Contijoch EJ, Britton GJ, Yang C, Mogno I, Li Z, Ng R, Llewellyn SR, Hira S, Johnson C, Rabinowitz KM, Barkan R, Dotan I, Hirten RP, Fu SC, Luo Y, Yang N, Luong T, Labrias PR, Lira S, Peter I, Grinspan A, Clemente JC, Kosoy R, Kim-Schulze S, Qin X, Castillo A, Hurley A, Atreja A, Rogers J, Fasihuddin F, Saliaj M, Nolan A, Reyes-Mercedes P, Rodriguez C, Aly S, Santa-Cruz K, Peters L, Suárez-Fariñas M, Huang R, Hao K, Zhu J, Zhang B, Losic B, Irizar H, Song WM, Di Narzo A, Wang W, Cohen BL, DiMaio C, Greenwald D, Itzkowitz S, Lucas A, Marion J, Maser E, Ungaro R, Naymagon S, Novak J, Shah B, Ullman T, Rubin P, George J, Legnani P, Telesco SE, Friedman JR, Brodmerkel C, Plevy S, Cho JH, Colombel JF, Schadt EE, Argmann C, Dubinsky M, Kasarskis A, Sands B, Faith JJ.

Elife. 2019 Jan 22;8. pii: e40553. doi: 10.7554/eLife.40553.

8.

Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice.

Britton GJ, Contijoch EJ, Mogno I, Vennaro OH, Llewellyn SR, Ng R, Li Z, Mortha A, Merad M, Das A, Gevers D, McGovern DPB, Singh N, Braun J, Jacobs JP, Clemente JC, Grinspan A, Sands BE, Colombel JF, Dubinsky MC, Faith JJ.

Immunity. 2019 Jan 15;50(1):212-224.e4. doi: 10.1016/j.immuni.2018.12.015.

9.

Heterogeneity in gut microbiota drive polyphenol metabolism that influences α-synuclein misfolding and toxicity.

Ho L, Zhao D, Ono K, Ruan K, Mogno I, Tsuji M, Carry E, Brathwaite J, Sims S, Frolinger T, Westfall S, Mazzola P, Wu Q, Hao K, Lloyd TE, Simon JE, Faith J, Pasinetti GM.

J Nutr Biochem. 2019 Feb;64:170-181. doi: 10.1016/j.jnutbio.2018.10.019. Epub 2018 Nov 14.

PMID:
30530257
10.

Specific Bacteria and Metabolites Associated With Response to Fecal Microbiota Transplantation in Patients With Ulcerative Colitis.

Paramsothy S, Nielsen S, Kamm MA, Deshpande NP, Faith JJ, Clemente JC, Paramsothy R, Walsh AJ, van den Bogaerde J, Samuel D, Leong RWL, Connor S, Ng W, Lin E, Borody TJ, Wilkins MR, Colombel JF, Mitchell HM, Kaakoush NO.

Gastroenterology. 2019 Apr;156(5):1440-1454.e2. doi: 10.1053/j.gastro.2018.12.001. Epub 2018 Dec 6.

PMID:
30529583
11.

Plio-Pleistocene decline of African megaherbivores: No evidence for ancient hominin impacts.

Faith JT, Rowan J, Du A, Koch PL.

Science. 2018 Nov 23;362(6417):938-941. doi: 10.1126/science.aau2728.

PMID:
30467167
12.

Development and validation of an ultra-high performance liquid chromatography/triple quadrupole mass spectrometry method for analyzing microbial-derived grape polyphenol metabolites.

Zhao D, Yuan B, Carry E, Pasinetti GM, Ho L, Faith J, Mogno I, Simon J, Wu Q.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Nov 1;1099:34-45. doi: 10.1016/j.jchromb.2018.09.014. Epub 2018 Sep 12.

13.

Microbial-Host Interactions in Inflammatory Bowel Disease, Functional Bowel Disease, Obesity and Obesity-Related Metabolic Disease.

Shah SC, Faith J, Colombel JF.

Gastroenterology. 2018 Nov;155(5):1283-1286. doi: 10.1053/j.gastro.2018.06.081. Epub 2018 Sep 1. No abstract available.

PMID:
30176219
14.

The spatio-temporal distribution of archaeological and faunal finds at Liang Bua (Flores, Indonesia) in light of the revised chronology for Homo floresiensis.

Sutikna T, Tocheri MW, Faith JT, Jatmiko, Due Awe R, Meijer HJM, Wahyu Saptomo E, Roberts RG.

J Hum Evol. 2018 Nov;124:52-74. doi: 10.1016/j.jhevol.2018.07.001. Epub 2018 Aug 31.

15.

Targeted analysis of microbial-generated phenolic acid metabolites derived from grape flavanols by gas chromatography-triple quadrupole mass spectrometry.

Carry E, Zhao D, Mogno I, Faith J, Ho L, Villani T, Patel H, Pasinetti GM, Simon JE, Wu Q.

J Pharm Biomed Anal. 2018 Sep 10;159:374-383. doi: 10.1016/j.jpba.2018.06.034. Epub 2018 Jun 20.

16.

Diet Modifies Colonic Microbiota and CD4+ T-Cell Repertoire to Induce Flares of Colitis in Mice With Myeloid-Cell Expression of Interleukin 23.

Chen L, He Z, Iuga AC, Martins Filho SN, Faith JJ, Clemente JC, Deshpande M, Jayaprakash A, Colombel JF, Lafaille JJ, Sachidanandam R, Furtado GC, Lira SA.

Gastroenterology. 2018 Oct;155(4):1177-1191.e16. doi: 10.1053/j.gastro.2018.06.034. Epub 2018 Jun 15.

PMID:
29909020
17.

Big data little help in megafauna mysteries.

Price GJ, Louys J, Faith JT, Lorenzen E, Westaway MC.

Nature. 2018 Jun;558(7708):23-25. doi: 10.1038/d41586-018-05330-7. No abstract available.

PMID:
29872205
18.

The Role of the Gut Microbiota in the Metabolism of Polyphenols as Characterized by Gnotobiotic Mice.

Pasinetti GM, Singh R, Westfall S, Herman F, Faith J, Ho L.

J Alzheimers Dis. 2018;63(2):409-421. doi: 10.3233/JAD-171151. Review.

19.

Environmental dynamics during the onset of the Middle Stone Age in eastern Africa.

Potts R, Behrensmeyer AK, Faith JT, Tryon CA, Brooks AS, Yellen JE, Deino AL, Kinyanjui R, Clark JB, Haradon CM, Levin NE, Meijer HJM, Veatch EG, Owen RB, Renaut RW.

Science. 2018 Apr 6;360(6384):86-90. doi: 10.1126/science.aao2200. Epub 2018 Mar 15.

PMID:
29545506
20.

Climatic controls on Later Stone Age human adaptation in Africa's southern Cape.

Chase BM, Faith JT, Mackay A, Chevalier M, Carr AS, Boom A, Lim S, Reimer PJ.

J Hum Evol. 2018 Jan;114:35-44. doi: 10.1016/j.jhevol.2017.09.006. Epub 2017 Oct 21.

PMID:
29447760
21.

Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.

Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G.

Nat Biotechnol. 2018 Jan;36(1):61-69. doi: 10.1038/nbt.4037. Epub 2017 Dec 11.

22.

Interactions Between Diet and the Intestinal Microbiota Alter Intestinal Permeability and Colitis Severity in Mice.

Llewellyn SR, Britton GJ, Contijoch EJ, Vennaro OH, Mortha A, Colombel JF, Grinspan A, Clemente JC, Merad M, Faith JJ.

Gastroenterology. 2018 Mar;154(4):1037-1046.e2. doi: 10.1053/j.gastro.2017.11.030. Epub 2017 Nov 23.

23.

A functional genomics predictive network model identifies regulators of inflammatory bowel disease.

Peters LA, Perrigoue J, Mortha A, Iuga A, Song WM, Neiman EM, Llewellyn SR, Di Narzo A, Kidd BA, Telesco SE, Zhao Y, Stojmirovic A, Sendecki J, Shameer K, Miotto R, Losic B, Shah H, Lee E, Wang M, Faith JJ, Kasarskis A, Brodmerkel C, Curran M, Das A, Friedman JR, Fukui Y, Humphrey MB, Iritani BM, Sibinga N, Tarrant TK, Argmann C, Hao K, Roussos P, Zhu J, Zhang B, Dobrin R, Mayer LF, Schadt EE.

Nat Genet. 2017 Oct;49(10):1437-1449. doi: 10.1038/ng.3947. Epub 2017 Sep 11.

24.

Further human fossils from the Middle Stone Age deposits of Die Kelders Cave 1, Western Cape Province, South Africa.

Grine FE, Marean CW, Faith JT, Black W, Mongle CS, Trinkaus E, le Roux SG, du Plessis A.

J Hum Evol. 2017 Aug;109:70-78. doi: 10.1016/j.jhevol.2017.05.009. Epub 2017 Jun 29. No abstract available.

PMID:
28688461
25.

A Comprehensive Database and Analysis Framework To Incorporate Multiscale Data Types and Enable Integrated Analysis of Bioactive Polyphenols.

Ho L, Cheng H, Wang J, Simon JE, Wu Q, Zhao D, Carry E, Ferruzzi MG, Faith J, Valcarcel B, Hao K, Pasinetti GM.

Mol Pharm. 2018 Mar 5;15(3):840-850. doi: 10.1021/acs.molpharmaceut.7b00412. Epub 2018 Feb 5.

26.

Evaluating the potential for tactical hunting in the Middle Stone Age: Insights from a bonebed of the extinct bovid, Rusingoryx atopocranion.

Jenkins KE, Nightingale S, Faith JT, Peppe DJ, Michel LA, Driese SG, McNulty KP, Tryon CA.

J Hum Evol. 2017 Jul;108:72-91. doi: 10.1016/j.jhevol.2016.11.004. Epub 2017 May 17.

PMID:
28622933
27.

Lyons et al. reply.

Lyons SK, Miller JH, Amatange KL, Behrensmeyer AK, Bercovici A, Blois JL, Davis M, DiMichele W, Du A, Eronen JT, Faith JT, Graves GR, Jud N, Labandeira C, Looy CV, McGill B, Patterson D, Pineda-Munoz S, Potts R, Riddle B, Terry R, Tóth A, Ulrich W, Villaseñor A, Wing S, Anderson H, Anderson J, Gotelli NJ.

Nature. 2016 Oct 27;538(7626):E3-E4. doi: 10.1038/nature20097. No abstract available.

PMID:
27786209
28.

Corrigendum: Holocene shifts in the assembly of plant and animal communities implicate human impacts.

Lyons SK, Amatangelo KL, Behrensmeyer AK, Bercovici A, Blois JL, Davis M, DiMichele WA, Du A, Eronen JT, Faith JT, Graves GR, Jud N, Labandeira C, Looy CV, McGill B, Miller JH, Patterson D, Pineda-Munoz S, Potts R, Riddle B, Terry R, Tóth A, Ulrich W, Villaseñor A, Wing S, Anderson H, Anderson J, Waller D, Gotelli NJ.

Nature. 2016 Oct 27;538(7626):542. doi: 10.1038/nature19104. Epub 2016 Aug 24. No abstract available.

PMID:
27556944
29.

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.

Chudnovskiy A, Mortha A, Kana V, Kennard A, Ramirez JD, Rahman A, Remark R, Mogno I, Ng R, Gnjatic S, Amir ED, Solovyov A, Greenbaum B, Clemente J, Faith J, Belkaid Y, Grigg ME, Merad M.

Cell. 2016 Oct 6;167(2):444-456.e14. doi: 10.1016/j.cell.2016.08.076.

30.

Cancer Fatalism and Preferred Sources of Cancer Information: an Assessment Using 2012 HINTS Data.

Sinky TH, Faith J, Lindly O, Thorburn S.

J Cancer Educ. 2018 Feb;33(1):231-237. doi: 10.1007/s13187-016-1115-1.

PMID:
27650861
31.

Lyons et al. reply.

Lyons SK, Miller JH, Tóth A, Amatangelo KL, Behrensmeyer AK, Bercovici A, Blois JL, Davis M, DiMichelle WA, Du A, Eronen JT, Faith JT, Graves GR, Jud N, Labandeira C, Looy CV, McGill B, Patterson D, Pineda-Munoz S, Potts R, Riddle B, Terry R, Ulrich W, Villaseñor A, Wing S, Anderson H, Anderson J, Gotelli NJ.

Nature. 2016 Sep 1;537(7618):E5-6. doi: 10.1038/nature19111. No abstract available.

PMID:
27582228
32.

A demographic perspective on the Middle to Later Stone Age transition from Nasera rockshelter, Tanzania.

Tryon CA, Faith JT.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 5;371(1698). pii: 20150238. doi: 10.1098/rstb.2015.0238.

33.

Unexpected Convergent Evolution of Nasal Domes between Pleistocene Bovids and Cretaceous Hadrosaur Dinosaurs.

O'Brien HD, Faith JT, Jenkins KE, Peppe DJ, Plummer TW, Jacobs ZL, Li B, Joannes-Boyau R, Price G, Feng YX, Tryon CA.

Curr Biol. 2016 Feb 22;26(4):503-8. doi: 10.1016/j.cub.2015.12.050. Epub 2016 Feb 4. Erratum in: Curr Biol. 2016 Feb 22;26(4):556.

34.

Microbiota regulate the ability of lung dendritic cells to induce IgA class-switch recombination and generate protective gastrointestinal immune responses.

Ruane D, Chorny A, Lee H, Faith J, Pandey G, Shan M, Simchoni N, Rahman A, Garg A, Weinstein EG, Oropallo M, Gaylord M, Ungaro R, Cunningham-Rundles C, Alexandropoulos K, Mucida D, Merad M, Cerutti A, Mehandru S.

J Exp Med. 2016 Jan 11;213(1):53-73. doi: 10.1084/jem.20150567. Epub 2015 Dec 28.

35.

Holocene shifts in the assembly of plant and animal communities implicate human impacts.

Lyons SK, Amatangelo KL, Behrensmeyer AK, Bercovici A, Blois JL, Davis M, DiMichele WA, Du A, Eronen JT, Faith JT, Graves GR, Jud N, Labandeira C, Looy CV, McGill B, Miller JH, Patterson D, Pineda-Munoz S, Potts R, Riddle B, Terry R, Tóth A, Ulrich W, Villaseñor A, Wing S, Anderson H, Anderson J, Waller D, Gotelli NJ.

Nature. 2016 Jan 7;529(7584):80-3. doi: 10.1038/nature16447. Epub 2015 Dec 16. Erratum in: Nature. 2016 Oct 27;538(7626):542.

PMID:
26675730
36.

Neutrophil ageing is regulated by the microbiome.

Zhang D, Chen G, Manwani D, Mortha A, Xu C, Faith JJ, Burk RD, Kunisaki Y, Jang JE, Scheiermann C, Merad M, Frenette PS.

Nature. 2015 Sep 24;525(7570):528-32. doi: 10.1038/nature15367. Epub 2015 Sep 16.

37.

Metabolic labeling puts the microbiome under the microscope.

Britton GJ, Faith JJ.

Nat Med. 2015 Sep;21(9):977-8. doi: 10.1038/nm.3941. No abstract available.

PMID:
26340118
38.

Alternating high and low climate variability: The context of natural selection and speciation in Plio-Pleistocene hominin evolution.

Potts R, Faith JT.

J Hum Evol. 2015 Oct;87:5-20. doi: 10.1016/j.jhevol.2015.06.014. Epub 2015 Aug 25.

PMID:
26315724
39.

Bridging the knowledge gap: from microbiome composition to function.

Faith JJ.

Mol Syst Biol. 2015 Mar;11(3):793. doi: 10.15252/msb.20156045.

40.

Paleoenvironmental context of the Middle Stone Age record from Karungu, Lake Victoria Basin, Kenya, and its implications for human and faunal dispersals in East Africa.

Faith JT, Tryon CA, Peppe DJ, Beverly EJ, Blegen N, Blumenthal S, Chritz KL, Driese SG, Patterson D.

J Hum Evol. 2015 Jun;83:28-45. doi: 10.1016/j.jhevol.2015.03.004. Epub 2015 Apr 13.

PMID:
25883052
41.

Examining the association between patient-centered communication and provider avoidance, CAM use, and CAM-use disclosure.

Faith J, Thorburn S, Tippens KM.

Altern Ther Health Med. 2015 Mar-Apr;21(2):30-5.

PMID:
25830278
42.

Stable isotope paleoecology of Late Pleistocene Middle Stone Age humans from the Lake Victoria basin, Kenya.

Garrett ND, Fox DL, McNulty KP, Faith JT, Peppe DJ, Van Plantinga A, Tryon CA.

J Hum Evol. 2015 May;82:1-14. doi: 10.1016/j.jhevol.2014.10.005. Epub 2015 Mar 21.

PMID:
25805041
43.

Late Pleistocene age and archaeological context for the hominin calvaria from GvJm-22 (Lukenya Hill, Kenya).

Tryon CA, Crevecoeur I, Faith JT, Ekshtain R, Nivens J, Patterson D, Mbua EN, Spoor F.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2682-7. doi: 10.1073/pnas.1417909112. Epub 2015 Feb 17.

44.

Role of intestinal microbiota in the generation of polyphenol-derived phenolic acid mediated attenuation of Alzheimer's disease β-amyloid oligomerization.

Wang D, Ho L, Faith J, Ono K, Janle EM, Lachcik PJ, Cooper BR, Jannasch AH, D'Arcy BR, Williams BA, Ferruzzi MG, Levine S, Zhao W, Dubner L, Pasinetti GM.

Mol Nutr Food Res. 2015 Jun;59(6):1025-40. doi: 10.1002/mnfr.201400544. Epub 2015 Apr 27. Erratum in: Mol Nutr Food Res. 2015 Jun;59(6):1222. Mol Nutr Food Res. 2015 Nov;59(11):2337.

45.

Identifying strains that contribute to complex diseases through the study of microbial inheritance.

Faith JJ, Colombel JF, Gordon JI.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):633-40. doi: 10.1073/pnas.1418781112. Epub 2015 Jan 9.

46.

Mining the human gut microbiota for effector strains that shape the immune system.

Ahern PP, Faith JJ, Gordon JI.

Immunity. 2014 Jun 19;40(6):815-23. doi: 10.1016/j.immuni.2014.05.012.

47.

Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice.

Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI.

Sci Transl Med. 2014 Jan 22;6(220):220ra11. doi: 10.1126/scitranslmed.3008051.

48.

Reply to Brook et al: No empirical evidence for human overkill of megafauna in Sahul.

Wroe S, Field JH, Archer M, Grayson DK, Price GJ, Louys J, Faith JT, Webb GE, Davidson I, Mooney SD.

Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):E3369. No abstract available.

49.

Taphonomic and paleoecological change in the large mammal sequence from Boomplaas Cave, western Cape, South Africa.

Faith JT.

J Hum Evol. 2013 Dec;65(6):715-30. doi: 10.1016/j.jhevol.2013.09.001. Epub 2013 Oct 5.

PMID:
24099924
50.

Examining CAM use disclosure using the Behavioral Model of Health Services Use.

Faith J, Thorburn S, Tippens KM.

Complement Ther Med. 2013 Oct;21(5):501-8. doi: 10.1016/j.ctim.2013.08.002. Epub 2013 Aug 17.

PMID:
24050587

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