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Items: 10


Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging.

Failmezger H, Dursun E, Dümcke S, Endele M, Poron D, Schroeder T, Krug A, Tresch A.

Bioinformatics. 2018 Nov 19. doi: 10.1093/bioinformatics/bty939. [Epub ahead of print]


Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.

Zhang AW, McPherson A, Milne K, Kroeger DR, Hamilton PT, Miranda A, Funnell T, Little N, de Souza CPE, Laan S, LeDoux S, Cochrane DR, Lim JLP, Yang W, Roth A, Smith MA, Ho J, Tse K, Zeng T, Shlafman I, Mayo MR, Moore R, Failmezger H, Heindl A, Wang YK, Bashashati A, Grewal DS, Brown SD, Lai D, Wan ANC, Nielsen CB, Huebner C, Tessier-Cloutier B, Anglesio MS, Bouchard-Côté A, Yuan Y, Wasserman WW, Gilks CB, Karnezis AN, Aparicio S, McAlpine JN, Huntsman DG, Holt RA, Nelson BH, Shah SP.

Cell. 2018 Jun 14;173(7):1755-1769.e22. doi: 10.1016/j.cell.2018.03.073. Epub 2018 May 10.


MowJoe: a method for automated-high throughput dissected leaf phenotyping.

Failmezger H, Lempe J, Khadem N, Cartolano M, Tsiantis M, Tresch A.

Plant Methods. 2018 Mar 26;14:27. doi: 10.1186/s13007-018-0290-y. eCollection 2018.


Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors.

Dursun E, Endele M, Musumeci A, Failmezger H, Wang SH, Tresch A, Schroeder T, Krug AB.

Sci Rep. 2016 Nov 28;6:37462. doi: 10.1038/srep37462.


Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions.

Niederberger T, Failmezger H, Uskat D, Poron D, Glauche I, Scherf N, Roeder I, Schroeder T, Tresch A.

Bioinformatics. 2015 Jun 1;31(11):1816-23. doi: 10.1093/bioinformatics/btv040. Epub 2015 Jan 31.


Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels.

Sun M, Schwalb B, Pirkl N, Maier KC, Schenk A, Failmezger H, Tresch A, Cramer P.

Mol Cell. 2013 Oct 10;52(1):52-62. doi: 10.1016/j.molcel.2013.09.010.


Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.

Failmezger H, Fröhlich H, Tresch A.

BMC Bioinformatics. 2013 Oct 4;14:292. doi: 10.1186/1471-2105-14-292.


Semi-automated 3D leaf reconstruction and analysis of trichome patterning from light microscopic images.

Failmezger H, Jaegle B, Schrader A, Hülskamp M, Tresch A.

PLoS Comput Biol. 2013 Apr;9(4):e1003029. doi: 10.1371/journal.pcbi.1003029. Epub 2013 Apr 18.


Learning gene network structure from time laps cell imaging in RNAi Knock downs.

Failmezger H, Praveen P, Tresch A, Fröhlich H.

Bioinformatics. 2013 Jun 15;29(12):1534-40. doi: 10.1093/bioinformatics/btt179. Epub 2013 Apr 17.


Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling.

Yuan Y, Failmezger H, Rueda OM, Ali HR, Gräf S, Chin SF, Schwarz RF, Curtis C, Dunning MJ, Bardwell H, Johnson N, Doyle S, Turashvili G, Provenzano E, Aparicio S, Caldas C, Markowetz F.

Sci Transl Med. 2012 Oct 24;4(157):157ra143. doi: 10.1126/scitranslmed.3004330. Erratum in: Sci Transl Med. 2012 Oct 24;4(157):161er6.

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