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Items: 1 to 50 of 62

1.

Genome-wide analysis of chromatin accessibility using ATAC-seq.

Shashikant T, Ettensohn CA.

Methods Cell Biol. 2019;151:219-235. doi: 10.1016/bs.mcb.2018.11.002. Epub 2018 Dec 21.

PMID:
30948010
2.

Techniques for analyzing gene expression using BAC-based reporter constructs.

Buckley KM, Ettensohn CA.

Methods Cell Biol. 2019;151:197-218. doi: 10.1016/bs.mcb.2019.01.004. Epub 2019 Feb 23.

PMID:
30948008
3.

From genome to anatomy: The architecture and evolution of the skeletogenic gene regulatory network of sea urchins and other echinoderms.

Shashikant T, Khor JM, Ettensohn CA.

Genesis. 2018 Oct;56(10):e23253. doi: 10.1002/dvg.23253. Review.

PMID:
30264451
4.

Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling.

Shashikant T, Khor JM, Ettensohn CA.

BMC Genomics. 2018 Mar 20;19(1):206. doi: 10.1186/s12864-018-4542-z.

5.
6.

TGF-β sensu stricto signaling regulates skeletal morphogenesis in the sea urchin embryo.

Sun Z, Ettensohn CA.

Dev Biol. 2017 Jan 15;421(2):149-160. doi: 10.1016/j.ydbio.2016.12.007. Epub 2016 Dec 10.

7.

KirrelL, a member of the Ig-domain superfamily of adhesion proteins, is essential for fusion of primary mesenchyme cells in the sea urchin embryo.

Ettensohn CA, Dey D.

Dev Biol. 2017 Jan 15;421(2):258-270. doi: 10.1016/j.ydbio.2016.11.006. Epub 2016 Nov 17.

8.

Signal-dependent regulation of the sea urchin skeletogenic gene regulatory network.

Sun Z, Ettensohn CA.

Gene Expr Patterns. 2014 Nov;16(2):93-103. doi: 10.1016/j.gep.2014.10.002. Epub 2014 Oct 16.

PMID:
25460514
9.

Horizontal transfer of the msp130 gene supported the evolution of metazoan biomineralization.

Ettensohn CA.

Evol Dev. 2014 May;16(3):139-48. doi: 10.1111/ede.12074. Epub 2014 Apr 15.

PMID:
24735463
10.

Growth factors and early mesoderm morphogenesis: insights from the sea urchin embryo.

Adomako-Ankomah A, Ettensohn CA.

Genesis. 2014 Mar;52(3):158-72. doi: 10.1002/dvg.22746. Epub 2014 Mar 5. Review.

PMID:
24515750
11.

Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins.

Rafiq K, Shashikant T, McManus CJ, Ettensohn CA.

Development. 2014 Feb;141(4):950-61. doi: 10.1242/dev.105585. Erratum in: Development. 2014 Jun;141(12):2542.

12.

Growth factor-mediated mesodermal cell guidance and skeletogenesis during sea urchin gastrulation.

Adomako-Ankomah A, Ettensohn CA.

Development. 2013 Oct;140(20):4214-25. doi: 10.1242/dev.100479. Epub 2013 Sep 11.

13.

Encoding anatomy: developmental gene regulatory networks and morphogenesis.

Ettensohn CA.

Genesis. 2013 Jun;51(6):383-409. doi: 10.1002/dvg.22380. Epub 2013 Mar 28. Review.

PMID:
23436627
14.

The genomic regulatory control of skeletal morphogenesis in the sea urchin.

Rafiq K, Cheers MS, Ettensohn CA.

Development. 2012 Feb;139(3):579-90. doi: 10.1242/dev.073049. Epub 2011 Dec 21.

15.

High-resolution, three-dimensional mapping of gene expression using GeneExpressMap (GEM).

Flynn CJ, Sharma T, Ruffins SW, Guerra SL, Crowley JC, Ettensohn CA.

Dev Biol. 2011 Sep 15;357(2):532-40. doi: 10.1016/j.ydbio.2011.06.033. Epub 2011 Jun 29.

16.

Regulative deployment of the skeletogenic gene regulatory network during sea urchin development.

Sharma T, Ettensohn CA.

Development. 2011 Jun;138(12):2581-90. doi: 10.1242/dev.065193.

17.

P58-A and P58-B: novel proteins that mediate skeletogenesis in the sea urchin embryo.

Adomako-Ankomah A, Ettensohn CA.

Dev Biol. 2011 May 1;353(1):81-93. doi: 10.1016/j.ydbio.2011.02.021. Epub 2011 Feb 26.

18.

Cell micromanipulation with an active handheld micromanipulator.

Cuevas Tabares J, Maclachlan RA, Ettensohn CA, Riviere CN.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:4363-6. doi: 10.1109/IEMBS.2010.5627111.

19.

Activation of the skeletogenic gene regulatory network in the early sea urchin embryo.

Sharma T, Ettensohn CA.

Development. 2010 Apr;137(7):1149-57. doi: 10.1242/dev.048652. Epub 2010 Feb 24.

20.

The expression and distribution of Wnt and Wnt receptor mRNAs during early sea urchin development.

Stamateris RE, Rafiq K, Ettensohn CA.

Gene Expr Patterns. 2010 Jan;10(1):60-4. doi: 10.1016/j.gep.2009.10.004. Epub 2009 Oct 22.

PMID:
19853669
21.
22.

Mesenchymal cell fusion in the sea urchin embryo.

Hodor PG, Ettensohn CA.

Methods Mol Biol. 2008;475:315-34. doi: 10.1007/978-1-59745-250-2_18.

PMID:
18979252
23.

Gene regulatory networks and developmental plasticity in the early sea urchin embryo: alternative deployment of the skeletogenic gene regulatory network.

Ettensohn CA, Kitazawa C, Cheers MS, Leonard JD, Sharma T.

Development. 2007 Sep;134(17):3077-87. Epub 2007 Aug 1.

24.

Analysis of dishevelled localization and function in the early sea urchin embryo.

Leonard JD, Ettensohn CA.

Dev Biol. 2007 Jun 1;306(1):50-65. Epub 2007 Mar 6.

25.
26.

The genome of the sea urchin Strongylocentrotus purpuratus.

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R.

Science. 2006 Nov 10;314(5801):941-52. Erratum in: Science. 2007 Feb 9;315(5813):766.

27.

A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation.

Roux MM, Townley IK, Raisch M, Reade A, Bradham C, Humphreys G, Gunaratne HJ, Killian CE, Moy G, Su YH, Ettensohn CA, Wilt F, Vacquier VD, Burke RD, Wessel G, Foltz KR.

Dev Biol. 2006 Dec 1;300(1):416-33. Epub 2006 Sep 12.

28.

A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus.

Livingston BT, Killian CE, Wilt F, Cameron A, Landrum MJ, Ermolaeva O, Sapojnikov V, Maglott DR, Buchanan AM, Ettensohn CA.

Dev Biol. 2006 Dec 1;300(1):335-48. Epub 2006 Aug 15.

29.

P16 is an essential regulator of skeletogenesis in the sea urchin embryo.

Cheers MS, Ettensohn CA.

Dev Biol. 2005 Jul 15;283(2):384-96.

30.

Rapid microinjection of fertilized eggs.

Cheers MS, Ettensohn CA.

Methods Cell Biol. 2004;74:287-310. Review. No abstract available.

PMID:
15575612
31.

The invertebrate deuterostomes: an introduction to their phylogeny, reproduction, development, and genomics.

Ettensohn CA, Wessel GM, Wray GA.

Methods Cell Biol. 2004;74:1-13. Review. No abstract available.

PMID:
15575600
32.

Differential stability of beta-catenin along the animal-vegetal axis of the sea urchin embryo mediated by dishevelled.

Weitzel HE, Illies MR, Byrum CA, Xu R, Wikramanayake AH, Ettensohn CA.

Development. 2004 Jun;131(12):2947-56. Epub 2004 May 19.

34.

Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus.

Illies MR, Peeler MT, Dechtiaruk AM, Ettensohn CA.

Dev Genes Evol. 2002 Oct;212(9):419-31. Epub 2002 Sep 7.

PMID:
12373587
35.
36.
37.

A large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo.

Zhu X, Mahairas G, Illies M, Cameron RA, Davidson EH, Ettensohn CA.

Development. 2001 Jul;128(13):2615-27.

38.

Patterning the early sea urchin embryo.

Ettensohn CA, Sweet HC.

Curr Top Dev Biol. 2000;50:1-44. Review. No abstract available.

PMID:
10948448
39.

A sea urchin genome project: sequence scan, virtual map, and additional resources.

Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L.

Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9514-8.

41.
42.

Cell movements in the sea urchin embryo.

Ettensohn CA.

Curr Opin Genet Dev. 1999 Aug;9(4):461-5. Review.

PMID:
10449348
43.

The dynamics and regulation of mesenchymal cell fusion in the sea urchin embryo.

Hodor PG, Ettensohn CA.

Dev Biol. 1998 Jul 1;199(1):111-24.

45.
46.
48.

Primary mesenchyme cell migration in the sea urchin embryo: distribution of directional cues.

Malinda KM, Ettensohn CA.

Dev Biol. 1994 Aug;164(2):562-78.

PMID:
8045352
49.
50.

A clonal analysis of secondary mesenchyme cell fates in the sea urchin embryo.

Ruffins SW, Ettensohn CA.

Dev Biol. 1993 Nov;160(1):285-8.

PMID:
8224545

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