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Items: 1 to 50 of 60

1.

Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle.

Lind AE, Lewis WH, Spang A, Guy L, Embley TM, Ettema TJG.

ISME J. 2018 Jul 10. doi: 10.1038/s41396-018-0207-9. [Epub ahead of print]

PMID:
29991760
2.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
3.

Deep mitochondrial origin outside the sampled alphaproteobacteria.

Martijn J, Vosseberg J, Guy L, Offre P, Ettema TJG.

Nature. 2018 May;557(7703):101-105. doi: 10.1038/s41586-018-0059-5. Epub 2018 Apr 25.

PMID:
29695865
4.

Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis.

Yutin N, Bäckström D, Ettema TJG, Krupovic M, Koonin EV.

Virol J. 2018 Apr 10;15(1):67. doi: 10.1186/s12985-018-0974-y.

5.

RNA Sequencing of Stentor Cell Fragments Reveals Transcriptional Changes during Cellular Regeneration.

Onsbring H, Jamy M, Ettema TJG.

Curr Biol. 2018 Apr 23;28(8):1281-1288.e3. doi: 10.1016/j.cub.2018.02.055. Epub 2018 Apr 5.

PMID:
29628369
6.

Asgard archaea are the closest prokaryotic relatives of eukaryotes.

Spang A, Eme L, Saw JH, Caceres EF, Zaremba-Niedzwiedzka K, Lombard J, Guy L, Ettema TJG.

PLoS Genet. 2018 Mar 29;14(3):e1007080. doi: 10.1371/journal.pgen.1007080. eCollection 2018 Mar. No abstract available.

7.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

8.

Archaea and the origin of eukaryotes.

Eme L, Spang A, Lombard J, Stairs CW, Ettema TJG.

Nat Rev Microbiol. 2018 Feb;16(2):120. doi: 10.1038/nrmicro.2017.154. Epub 2017 Nov 27.

PMID:
29176585
9.

Archaea and the origin of eukaryotes.

Eme L, Spang A, Lombard J, Stairs CW, Ettema TJG.

Nat Rev Microbiol. 2017 Nov 10;15(12):711-723. doi: 10.1038/nrmicro.2017.133. Review. Erratum in: Nat Rev Microbiol. 2017 Nov 27;:.

PMID:
29123225
10.

Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon.

Hennell James R, Caceres EF, Escasinas A, Alhasan H, Howard JA, Deery MJ, Ettema TJG, Robinson NP.

Nat Commun. 2017 Oct 24;8(1):1120. doi: 10.1038/s41467-017-01162-7.

11.

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life.

Spang A, Caceres EF, Ettema TJG.

Science. 2017 Aug 11;357(6351). pii: eaaf3883. doi: 10.1126/science.aaf3883. Review.

PMID:
28798101
12.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.

PMID:
28787424
13.

Archaeal evolution: The methanogenic roots of Archaea.

Spang A, Ettema TJG.

Nat Microbiol. 2017 Jul 25;2:17109. doi: 10.1038/nmicrobiol.2017.109. No abstract available.

PMID:
28741608
14.

Integrative modeling of gene and genome evolution roots the archaeal tree of life.

Williams TA, Szöllősi GJ, Spang A, Foster PG, Heaps SE, Boussau B, Ettema TJG, Embley TM.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):E4602-E4611. doi: 10.1073/pnas.1618463114. Epub 2017 May 22.

15.

Archaeal Actin-Family Filament Systems.

Lindås AC, Valegård K, Ettema TJG.

Subcell Biochem. 2017;84:379-392. doi: 10.1007/978-3-319-53047-5_13.

PMID:
28500533
16.

The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins.

Marshall IPG, Starnawski P, Cupit C, Fernández Cáceres E, Ettema TJG, Schramm A, Kjeldsen KU.

Environ Microbiol Rep. 2017 Aug;9(4):397-403. doi: 10.1111/1758-2229.12544. Epub 2017 Jun 27.

PMID:
28488795
17.

Microbial community assembly and evolution in subseafloor sediment.

Starnawski P, Bataillon T, Ettema TJ, Jochum LM, Schreiber L, Chen X, Lever MA, Polz MF, Jørgensen BB, Schramm A, Kjeldsen KU.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2940-2945. doi: 10.1073/pnas.1614190114. Epub 2017 Feb 27.

18.

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, Spang A, Ettema TJ.

Nature. 2017 Jan 19;541(7637):353-358. doi: 10.1038/nature21031. Epub 2017 Jan 11.

PMID:
28077874
19.

Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis.

Hammond M, Homa F, Andersson-Svahn H, Ettema TJ, Joensson HN.

Microbiome. 2016 Oct 6;4(1):52.

20.

Microbial diversity: The tree of life comes of age.

Spang A, Ettema TJ.

Nat Microbiol. 2016 Apr 26;1:16056. doi: 10.1038/nmicrobiol.2016.56. No abstract available.

PMID:
27572651
21.

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea.

Baker BJ, Saw JH, Lind AE, Lazar CS, Hinrichs KU, Teske AP, Ettema TJ.

Nat Microbiol. 2016 Feb 15;1:16002. doi: 10.1038/nmicrobiol.2016.2.

PMID:
27572167
22.

Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks.

Klinger CM, Spang A, Dacks JB, Ettema TJ.

Mol Biol Evol. 2016 Jun;33(6):1528-41. doi: 10.1093/molbev/msw034. Epub 2016 Feb 17.

PMID:
26893300
23.

Evolution: Mitochondria in the second act.

Ettema TJ.

Nature. 2016 Mar 3;531(7592):39-40. doi: 10.1038/nature16876. Epub 2016 Feb 3. No abstract available.

PMID:
26840482
24.

Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes.

Saw JH, Spang A, Zaremba-Niedzwiedzka K, Juzokaite L, Dodsworth JA, Murugapiran SK, Colman DR, Takacs-Vesbach C, Hedlund BP, Guy L, Ettema TJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140328. doi: 10.1098/rstb.2014.0328.

25.

Complex archaea that bridge the gap between prokaryotes and eukaryotes.

Spang A, Saw JH, Jørgensen SL, Zaremba-Niedzwiedzka K, Martijn J, Lind AE, van Eijk R, Schleper C, Guy L, Ettema TJG.

Nature. 2015 May 14;521(7551):173-179. doi: 10.1038/nature14447. Epub 2015 May 6.

26.

A Rickettsiales symbiont of amoebae with ancient features.

Schulz F, Martijn J, Wascher F, Lagkouvardos I, Kostanjšek R, Ettema TJ, Horn M.

Environ Microbiol. 2016 Sep;18(8):2326-42. doi: 10.1111/1462-2920.12881. Epub 2015 Jun 5.

PMID:
25908022
27.

Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution.

Martijn J, Schulz F, Zaremba-Niedzwiedzka K, Viklund J, Stepanauskas R, Andersson SG, Horn M, Guy L, Ettema TJ.

ISME J. 2015 Nov;9(11):2373-85. doi: 10.1038/ismej.2015.46. Epub 2015 Apr 7.

28.

The archaeal legacy of eukaryotes: a phylogenomic perspective.

Guy L, Saw JH, Ettema TJ.

Cold Spring Harb Perspect Biol. 2014 Jul 3;6(10):a016022. doi: 10.1101/cshperspect.a016022. Review.

29.

Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle.

Ettema TJ, Lindås AC, Hjort K, Poplawski AB, Kaessmann H, Grogan DW, Kelman Z, Andersson AF, Pelve EA, Lundgren M, Svärd SG.

Mol Microbiol. 2014 Jun;92(5):903-9. doi: 10.1111/mmi.12608. Erratum in: Mol Microbiol. 2014 Aug;93(3):582.

30.

Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain.

Blombach F, Launay H, Snijders AP, Zorraquino V, Wu H, de Koning B, Brouns SJ, Ettema TJ, Camilloni C, Cavalli A, Vendruscolo M, Dickman MJ, Cabrita LD, La Teana A, Benelli D, Londei P, Christodoulou J, van der Oost J.

Biochem J. 2014 Sep 1;462(2):373-84. doi: 10.1042/BJ20131474.

PMID:
24825021
31.

'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum.

Guy L, Spang A, Saw JH, Ettema TJ.

ISME J. 2014 Jul;8(7):1353-7. doi: 10.1038/ismej.2014.6. Epub 2014 Feb 13. No abstract available.

32.

Close encounters of the third domain: the emerging genomic view of archaeal diversity and evolution.

Spang A, Martijn J, Saw JH, Lind AE, Guy L, Ettema TJ.

Archaea. 2013;2013:202358. doi: 10.1155/2013/202358. Epub 2013 Nov 19. Review.

33.

Comparative and phylogenomic evidence that the alphaproteobacterium HIMB59 is not a member of the oceanic SAR11 clade.

Viklund J, Martijn J, Ettema TJ, Andersson SG.

PLoS One. 2013 Nov 1;8(11):e78858. doi: 10.1371/journal.pone.0078858. eCollection 2013.

34.

From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell.

Martijn J, Ettema TJ.

Biochem Soc Trans. 2013 Feb 1;41(1):451-7. doi: 10.1042/BST20120292. Review.

PMID:
23356327
35.

Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius.

Reimann J, Lassak K, Khadouma S, Ettema TJ, Yang N, Driessen AJ, Klingl A, Albers SV.

Mol Microbiol. 2012 Oct;86(1):24-36. doi: 10.1111/j.1365-2958.2012.08186.x. Epub 2012 Aug 22.

36.

Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing.

Beier S, Mohit V, Ettema TJ, Ostman O, Tranvik LJ, Bertilsson S.

Environ Microbiol. 2012 Sep;14(9):2467-79. doi: 10.1111/j.1462-2920.2012.02764.x. Epub 2012 May 7.

PMID:
22564279
37.

An archaeal origin for the actin cytoskeleton: Implications for eukaryogenesis.

Bernander R, Lind AE, Ettema TJ.

Commun Integr Biol. 2011 Nov 1;4(6):664-7.

38.

The archaeal 'TACK' superphylum and the origin of eukaryotes.

Guy L, Ettema TJ.

Trends Microbiol. 2011 Dec;19(12):580-7. doi: 10.1016/j.tim.2011.09.002. Epub 2011 Oct 20.

PMID:
22018741
39.

A phylometagenomic exploration of oceanic alphaproteobacteria reveals mitochondrial relatives unrelated to the SAR11 clade.

Brindefalk B, Ettema TJ, Viklund J, Thollesson M, Andersson SG.

PLoS One. 2011;6(9):e24457. doi: 10.1371/journal.pone.0024457. Epub 2011 Sep 14.

40.

Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade.

Viklund J, Ettema TJ, Andersson SG.

Mol Biol Evol. 2012 Feb;29(2):599-615. doi: 10.1093/molbev/msr203. Epub 2011 Sep 7.

PMID:
21900598
41.

An actin-based cytoskeleton in archaea.

Ettema TJ, Lindås AC, Bernander R.

Mol Microbiol. 2011 May;80(4):1052-61. doi: 10.1111/j.1365-2958.2011.07635.x. Epub 2011 Apr 6.

42.

TEFM (c17orf42) is necessary for transcription of human mtDNA.

Minczuk M, He J, Duch AM, Ettema TJ, Chlebowski A, Dzionek K, Nijtmans LG, Huynen MA, Holt IJ.

Nucleic Acids Res. 2011 May;39(10):4284-99. doi: 10.1093/nar/gkq1224. Epub 2011 Jan 28.

43.

FtsZ-less cell division in archaea and bacteria.

Bernander R, Ettema TJ.

Curr Opin Microbiol. 2010 Dec;13(6):747-52. doi: 10.1016/j.mib.2010.10.005. Epub 2010 Nov 1. Review.

PMID:
21050804
44.

Comparative and functional analysis of the archaeal cell cycle.

Bernander R, Lundgren M, Ettema TJ.

Cell Cycle. 2010 Feb 15;9(4):794-806. Epub 2010 Feb 17.

PMID:
20139715
45.

Cell division and the ESCRT complex: A surprise from the archaea.

Ettema TJ, Bernander R.

Commun Integr Biol. 2009;2(2):86-8.

46.

The alpha-proteobacteria: the Darwin finches of the bacterial world.

Ettema TJ, Andersson SG.

Biol Lett. 2009 Jun 23;5(3):429-32. doi: 10.1098/rsbl.2008.0793. Epub 2009 Mar 11.

47.

A unique cell division machinery in the Archaea.

Lindås AC, Karlsson EA, Lindgren MT, Ettema TJ, Bernander R.

Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18942-6. doi: 10.1073/pnas.0809467105. Epub 2008 Nov 5.

48.

Comment on "A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea".

Ettema TJ, Andersson SG.

Science. 2008 Jul 18;321(5887):342; author reply 342. doi: 10.1126/science.1158766.

49.

Signature genes as a phylogenomic tool.

Dutilh BE, Snel B, Ettema TJ, Huynen MA.

Mol Biol Evol. 2008 Aug;25(8):1659-67. doi: 10.1093/molbev/msn115. Epub 2008 May 19.

50.

Reconstructing the evolution of the mitochondrial ribosomal proteome.

Smits P, Smeitink JA, van den Heuvel LP, Huynen MA, Ettema TJ.

Nucleic Acids Res. 2007;35(14):4686-703. Epub 2007 Jun 29.

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