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Items: 18

1.

Adaptation and conservation insights from the koala genome.

Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, Alquezar-Planas DE, Attenbrow V, Bragg JG, Brandies PA, Chong AY, Deakin JE, Di Palma F, Duda Z, Eldridge MDB, Ewart KM, Hogg CJ, Frankham GJ, Georges A, Gillett AK, Govendir M, Greenwood AD, Hayakawa T, Helgen KM, Hobbs M, Holleley CE, Heider TN, Jones EA, King A, Madden D, Graves JAM, Morris KM, Neaves LE, Patel HR, Polkinghorne A, Renfree MB, Robin C, Salinas R, Tsangaras K, Waters PD, Waters SA, Wright B, Wilkins MR, Timms P, Belov K.

Nat Genet. 2018 Aug;50(8):1102-1111. doi: 10.1038/s41588-018-0153-5. Epub 2018 Jul 2.

2.

Retraction: Loss of a Conserved tRNA Anticodon Modification Perturbs Plant Immunity.

Ramírez V, Gonzalez B, López A, Castelló MJ, Gil MJ, Etherington GJ, Zheng B, Chen P, Vera P.

PLoS Genet. 2017 Apr 24;13(4):e1006747. doi: 10.1371/journal.pgen.1006747. eCollection 2017 Apr. No abstract available.

3.

Arabidopsis late blight: infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans.

Belhaj K, Cano LM, Prince DC, Kemen A, Yoshida K, Dagdas YF, Etherington GJ, Schoonbeek HJ, van Esse HP, Jones JD, Kamoun S, Schornack S.

Cell Microbiol. 2017 Jan;19(1). doi: 10.1111/cmi.12628. Epub 2016 Jul 8.

4.

Correction: Loss of a Conserved tRNA Anticodon Modification Perturbs Plant Immunity.

Ramírez V, Gonzalez B, López A, Castelló MJ, Gil MJ, Etherington GJ, Zheng B, Chen P, Vera P.

PLoS Genet. 2016 Feb 26;12(2):e1005911. doi: 10.1371/journal.pgen.1005911. eCollection 2016 Feb. No abstract available.

5.

Loss of a Conserved tRNA Anticodon Modification Perturbs Plant Immunity.

Ramírez V, Gonzalez B, López A, Castelló MJ, Gil MJ, Etherington GJ, Zheng B, Chen P, Vera P.

PLoS Genet. 2015 Oct 22;11(10):e1005586. doi: 10.1371/journal.pgen.1005586. eCollection 2015 Oct. Erratum in: PLoS Genet. 2016 Feb;12(2):e1005911. Etherington, Graham J [added]. Retraction in: PLoS Genet. 2017 Apr 24;13(4):e1006747.

6.

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.

Etherington GJ, Ramirez-Gonzalez RH, MacLean D.

Bioinformatics. 2015 Aug 1;31(15):2565-7. doi: 10.1093/bioinformatics/btv178. Epub 2015 Mar 29.

PMID:
25819670
7.

Mapping mutations in plant genomes with the user-friendly web application CandiSNP.

Etherington GJ, Monaghan J, Zipfel C, MacLean D.

Plant Methods. 2014 Dec 30;10(1):41. doi: 10.1186/s13007-014-0041-7. eCollection 2014.

8.

Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq.

Andolfo G, Jupe F, Witek K, Etherington GJ, Ercolano MR, Jones JD.

BMC Plant Biol. 2014 May 5;14:120. doi: 10.1186/1471-2229-14-120.

9.

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics.

Rallapalli G, Kemen EM, Robert-Seilaniantz A, Segonzac C, Etherington GJ, Sohn KH, MacLean D, Jones JD.

BMC Genomics. 2014 May 6;15:341. doi: 10.1186/1471-2164-15-341.

10.

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations.

Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, Maclean D, Cock PJ, Leggett RM, Bryan GJ, Cardle L, Hein I, Jones JD.

Plant J. 2013 Nov;76(3):530-44. doi: 10.1111/tpj.12307. Epub 2013 Oct 8.

11.

From pathogen genomes to host plant processes: the power of plant parasitic oomycetes.

Pais M, Win J, Yoshida K, Etherington GJ, Cano LM, Raffaele S, Banfield MJ, Jones A, Kamoun S, Saunders DG.

Genome Biol. 2013 Jun 28;14(6):211. doi: 10.1186/gb-2013-14-6-211. Review.

12.

SVGenes: a library for rendering genomic features in scalable vector graphic format.

Etherington GJ, MacLean D.

Bioinformatics. 2013 Aug 1;29(15):1890-2. doi: 10.1093/bioinformatics/btt294. Epub 2013 Jun 6.

13.

Transcriptome analysis of the sulfate deficiency response in the marine microalga Emiliania huxleyi.

Bochenek M, Etherington GJ, Koprivova A, Mugford ST, Bell TG, Malin G, Kopriva S.

New Phytol. 2013 Aug;199(3):650-62. doi: 10.1111/nph.12303. Epub 2013 May 21.

14.

Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen.

Cooke DE, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM, Grünwald NJ, Hein I, MacLean D, McNicol JW, Randall E, Oliva RF, Pel MA, Shaw DS, Squires JN, Taylor MC, Vleeshouwers VG, Birch PR, Lees AK, Kamoun S.

PLoS Pathog. 2012;8(10):e1002940. doi: 10.1371/journal.ppat.1002940. Epub 2012 Oct 4.

15.

Identification and localisation of the NB-LRR gene family within the potato genome.

Jupe F, Pritchard L, Etherington GJ, Mackenzie K, Cock PJ, Wright F, Sharma SK, Bolser D, Bryan GJ, Jones JD, Hein I.

BMC Genomics. 2012 Feb 15;13:75. doi: 10.1186/1471-2164-13-75.

16.

Tracing the origin and co-phylogeny of the caliciviruses.

Etherington GJ, Ring SM, Charleston MA, Dicks J, Rayward-Smith VJ, Roberts IN.

J Gen Virol. 2006 May;87(Pt 5):1229-35.

PMID:
16603525
17.

High throughput sequence analysis reveals hitherto unreported recombination in the genus Norovirus.

Etherington GJ, Dicks J, Roberts IN.

Virology. 2006 Feb 5;345(1):88-95. Epub 2005 Nov 2.

18.

Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination.

Etherington GJ, Dicks J, Roberts IN.

Bioinformatics. 2005 Feb 1;21(3):278-81. Epub 2004 Aug 27.

PMID:
15333462

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