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Items: 13

1.

Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription.

Janissen R, Arens MMA, Vtyurina NN, Rivai Z, Sunday ND, Eslami-Mossallam B, Gritsenko AA, Laan L, de Ridder D, Artsimovitch I, Dekker NH, Abbondanzieri EA, Meyer AS.

Cell. 2018 Aug 23;174(5):1188-1199.e14. doi: 10.1016/j.cell.2018.06.049. Epub 2018 Jul 26.

PMID:
30057118
2.

Hybridization Kinetics Explains CRISPR-Cas Off-Targeting Rules.

Klein M, Eslami-Mossallam B, Arroyo DG, Depken M.

Cell Rep. 2018 Feb 6;22(6):1413-1423. doi: 10.1016/j.celrep.2018.01.045.

3.

Designing nucleosomal force sensors.

Tompitak M, de Bruin L, Eslami-Mossallam B, Schiessel H.

Phys Rev E. 2017 May;95(5-1):052402. doi: 10.1103/PhysRevE.95.052402. Epub 2017 May 8.

PMID:
28618598
4.

Stiffer double-stranded DNA in two-dimensional confinement due to bending anisotropy.

Salari H, Eslami-Mossallam B, Ranjbar HF, Ejtehadi MR.

Phys Rev E. 2016 Dec;94(6-1):062407. doi: 10.1103/PhysRevE.94.062407. Epub 2016 Dec 19.

PMID:
28085439
5.

Multiplexing Genetic and Nucleosome Positioning Codes: A Computational Approach.

Eslami-Mossallam B, Schram RD, Tompitak M, van Noort J, Schiessel H.

PLoS One. 2016 Jun 7;11(6):e0156905. doi: 10.1371/journal.pone.0156905. eCollection 2016.

6.

Why Do Nucleosomes Unwrap Asymmetrically?

de Bruin L, Tompitak M, Eslami-Mossallam B, Schiessel H.

J Phys Chem B. 2016 Jul 7;120(26):5855-63. doi: 10.1021/acs.jpcb.6b00391. Epub 2016 Mar 24.

PMID:
26991771
7.

Nucleosome dynamics: Sequence matters.

Eslami-Mossallam B, Schiessel H, van Noort J.

Adv Colloid Interface Sci. 2016 Jun;232:101-113. doi: 10.1016/j.cis.2016.01.007. Epub 2016 Feb 4. Review.

PMID:
26896338
8.

Extreme bendability of DNA double helix due to bending asymmetry.

Salari H, Eslami-Mossallam B, Naderi S, Ejtehadi MR.

J Chem Phys. 2015 Sep 14;143(10):104904. doi: 10.1063/1.4929994.

PMID:
26374059
9.

Confinement dynamics of a semiflexible chain inside nano-spheres.

Fathizadeh A, Heidari M, Eslami-Mossallam B, Ejtehadi MR.

J Chem Phys. 2013 Jul 28;139(4):044912. doi: 10.1063/1.4816626.

PMID:
23902024
10.

Definition of the persistence length in the coarse-grained models of DNA elasticity.

Fathizadeh A, Eslami-Mossallam B, Ejtehadi MR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Nov;86(5 Pt 1):051907. Epub 2012 Nov 6.

PMID:
23214814
11.

Contribution of nonlocal interactions to DNA elasticity.

Eslami-Mossallam B, Ejtehadi MR.

J Chem Phys. 2011 Mar 28;134(12):125106. doi: 10.1063/1.3567185.

PMID:
21456706
12.

Asymmetric elastic rod model for DNA.

Eslami-Mossallam B, Ejtehadi MR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 1):011919. Epub 2009 Jul 24.

PMID:
19658741
13.

Stretching an anisotropic DNA.

Eslami-Mossallam B, Ejtehadi MR.

J Chem Phys. 2008 Mar 28;128(12):125106. doi: 10.1063/1.2842065.

PMID:
18376981

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