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Items: 1 to 50 of 142

1.

Two siblings with PRKDC defect who presented with cutaneous granulomas and review of the literature.

Esenboga S, Akal C, Karaatmaca B, Erman B, Dogan S, Orhan D, Boztug K, Ayvaz D, Tezcan İ.

Clin Immunol. 2018 Dec;197:1-5. doi: 10.1016/j.clim.2018.08.002. Epub 2018 Aug 16.

PMID:
30121298
2.

A Novel Homozygous Mutation With Different Clinical Presentations in 2 IRAK-4-Deficient Siblings: First Case With Recurrent Salmonellosis and Non-Hodgkin Lymphoma.

Gokturk B, Casanova JL, Picard C, Cagdas Ayvaz D, Erman B, Tezcan I, Ozdemir H, Ozel A, Reisli I.

J Investig Allergol Clin Immunol. 2018 Aug;28(4):271-273. doi: 10.18176/jiaci.0261. No abstract available.

3.

A computational model for controlling conformational cooperativity and function in proteins.

Erman B.

Proteins. 2018 Sep;86(9):1001-1009. doi: 10.1002/prot.25535. Epub 2018 Aug 25.

PMID:
30051502
4.

Molecular dynamics simulations of site point mutations in the TPR domain of cyclophilin 40 identify conformational states with distinct dynamic and enzymatic properties.

Gur M, Blackburn EA, Ning J, Narayan V, Ball KL, Walkinshaw MD, Erman B.

J Chem Phys. 2018 Apr 14;148(14):145101. doi: 10.1063/1.5019457.

5.

Role of natural killer cells in lung cancer.

Aktaş ON, Öztürk AB, Erman B, Erus S, Tanju S, Dilege Ş.

J Cancer Res Clin Oncol. 2018 Jun;144(6):997-1003. doi: 10.1007/s00432-018-2635-3. Epub 2018 Apr 3. Review.

PMID:
29616326
6.

Binding stability of peptides on major histocompatibility complex class I proteins: role of entropy and dynamics.

Gul A, Erman B.

Phys Biol. 2018 Jan 16;15(2):026005. doi: 10.1088/1478-3975/aa93b8.

PMID:
29035272
7.

2016 ACR-EULAR adult dermatomyositis and polymyositis and juvenile dermatomyositis response criteria-methodological aspects.

Rider LG, Ruperto N, Pistorio A, Erman B, Bayat N, Lachenbruch PA, Rockette H, Feldman BM, Huber AM, Hansen P, Oddis CV, Lundberg IE, Amato AA, Chinoy H, Cooper RG, Chung L, Danko K, Fiorentino D, García-De la Torre I, Reed AM, Wook Song Y, Cimaz R, Cuttica RJ, Pilkington CA, Martini A, van der Net J, Maillard S, Miller FW, Vencovsky J, Aggarwal R; International Myositis Assessment and Clinical Studies Group and the Paediatric Rheumatology International Trials Organisation.

Rheumatology (Oxford). 2017 Nov 1;56(11):1884-1893. doi: 10.1093/rheumatology/kex226.

8.

Identification of lineage-specifying cytokines that signal all CD8+-cytotoxic-lineage-fate 'decisions' in the thymus.

Etzensperger R, Kadakia T, Tai X, Alag A, Guinter TI, Egawa T, Erman B, Singer A.

Nat Immunol. 2017 Nov;18(11):1218-1227. doi: 10.1038/ni.3847. Epub 2017 Sep 25.

9.

2016 American College of Rheumatology/European League Against Rheumatism criteria for minimal, moderate, and major clinical response in adult dermatomyositis and polymyositis: An International Myositis Assessment and Clinical Studies Group/Paediatric Rheumatology International Trials Organisation Collaborative Initiative.

Aggarwal R, Rider LG, Ruperto N, Bayat N, Erman B, Feldman BM, Oddis CV, Amato AA, Chinoy H, Cooper RG, Dastmalchi M, Fiorentino D, Isenberg D, Katz JD, Mammen A, de Visser M, Ytterberg SR, Lundberg IE, Chung L, Danko K, García-De la Torre I, Song YW, Villa L, Rinaldi M, Rockette H, Lachenbruch PA, Miller FW, Vencovsky J; International Myositis Assessment and Clinical Studies Group and the Paediatric Rheumatology International Trials Organisation.

Ann Rheum Dis. 2017 May;76(5):792-801. doi: 10.1136/annrheumdis-2017-211400.

10.

2016 American College of Rheumatology/European League Against Rheumatism Criteria for Minimal, Moderate, and Major Clinical Response in Juvenile Dermatomyositis: An International Myositis Assessment and Clinical Studies Group/Paediatric Rheumatology International Trials Organisation Collaborative Initiative.

Rider LG, Aggarwal R, Pistorio A, Bayat N, Erman B, Feldman BM, Huber AM, Cimaz R, Cuttica RJ, de Oliveira SK, Lindsley CB, Pilkington CA, Punaro M, Ravelli A, Reed AM, Rouster-Stevens K, van Royen-Kerkhof A, Dressler F, Saad Magalhaes C, Constantin T, Davidson JE, Magnusson B, Russo R, Villa L, Rinaldi M, Rockette H, Lachenbruch PA, Miller FW, Vencovsky J, Ruperto N; International Myositis Assessment and Clinical Studies Group and the Paediatric Rheumatology International Trials Organisation.

Ann Rheum Dis. 2017 May;76(5):782-791. doi: 10.1136/annrheumdis-2017-211401. Erratum in: Ann Rheum Dis. 2018 Apr;77(4):623.

11.

2016 American College of Rheumatology/European League Against Rheumatism Criteria for Minimal, Moderate, and Major Clinical Response in Adult Dermatomyositis and Polymyositis: An International Myositis Assessment and Clinical Studies Group/Paediatric Rheumatology International Trials Organisation Collaborative Initiative.

Aggarwal R, Rider LG, Ruperto N, Bayat N, Erman B, Feldman BM, Oddis CV, Amato AA, Chinoy H, Cooper RG, Dastmalchi M, Fiorentino D, Isenberg D, Katz JD, Mammen A, de Visser M, Ytterberg SR, Lundberg IE, Chung L, Danko K, García-De la Torre I, Song YW, Villa L, Rinaldi M, Rockette H, Lachenbruch PA, Miller FW, Vencovsky J; International Myositis Assessment and Clinical Studies Group and the Paediatric Rheumatology International Trials Organisation.

Arthritis Rheumatol. 2017 May;69(5):898-910. doi: 10.1002/art.40064. Epub 2017 Apr 6.

12.

2016 American College of Rheumatology/European League Against Rheumatism Criteria for Minimal, Moderate, and Major Clinical Response in Juvenile Dermatomyositis: An International Myositis Assessment and Clinical Studies Group/Paediatric Rheumatology International Trials Organisation Collaborative Initiative.

Rider LG, Aggarwal R, Pistorio A, Bayat N, Erman B, Feldman BM, Huber AM, Cimaz R, Cuttica RJ, de Oliveira SK, Lindsley CB, Pilkington CA, Punaro M, Ravelli A, Reed AM, Rouster-Stevens K, van Royen-Kerkhof A, Dressler F, Magalhaes CS, Constantin T, Davidson JE, Magnusson B, Russo R, Villa L, Rinaldi M, Rockette H, Lachenbruch PA, Miller FW, Vencovsky J, Ruperto N; International Myositis Assessment and Clinical Studies Group and the Paediatric Rheumatology International Trials Organisation.

Arthritis Rheumatol. 2017 May;69(5):911-923. doi: 10.1002/art.40060. Epub 2017 Apr 6. Erratum in: Arthritis Rheumatol. 2018 Mar;70(3):467.

13.

Reducing Virulence and Biofilm of Pseudomonas aeruginosa by Potential Quorum Sensing Inhibitor Carotenoid: Zeaxanthin.

Gökalsın B, Aksoydan B, Erman B, Sesal NC.

Microb Ecol. 2017 Aug;74(2):466-473. doi: 10.1007/s00248-017-0949-3. Epub 2017 Mar 2.

PMID:
28255686
14.

Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions.

Hacisuleyman A, Erman B.

Proteins. 2017 Jun;85(6):1056-1064. doi: 10.1002/prot.25272. Epub 2017 Mar 17.

PMID:
28241380
15.

Diagnosis of Interstitial Lung Disease Caused by Possible Hypersensitivity Pneumonitis in a Child: Think CGD.

Esenboga S, Emiralioglu N, Cagdas D, Erman B, De Boer M, Oguz B, Kiper N, Tezcan İ.

J Clin Immunol. 2017 Apr;37(3):269-272. doi: 10.1007/s10875-017-0376-8. Epub 2017 Feb 21.

PMID:
28224353
16.

Investigation of Genetic Defects in Severe Combined Immunodeficiency Patients from Turkey by Targeted Sequencing.

Erman B, Bilic I, Hirschmugl T, Salzer E, Boztug H, Sanal Ö, Çağdaş Ayvaz D, Tezcan I, Boztug K.

Scand J Immunol. 2017 Mar;85(3):227-234. doi: 10.1111/sji.12523.

17.

Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.

Hacisuleyman A, Erman B.

PLoS Comput Biol. 2017 Jan 17;13(1):e1005319. doi: 10.1371/journal.pcbi.1005319. eCollection 2017 Jan.

18.

Defective pneumococcal antibody response in patients with recurrent respiratory tract infections.

Erman B, Demirtaş D, Bildik HN, Çağdaş-Ayvaz D, Sanal Ö, Tezcan İ.

Turk J Pediatr. 2017;59(5):555-560. doi: 10.24953/turkjped.2017.05.008.

19.

Intrinsic K-Ras dynamics: A novel molecular dynamics data analysis method shows causality between residue pair motions.

Vatansever S, Gümüş ZH, Erman B.

Sci Rep. 2016 Nov 15;6:37012. doi: 10.1038/srep37012.

20.

A small molecule identified through an in silico screen inhibits Aurora B-INCENP interaction.

Unsal E, Degirmenci B, Harmanda B, Erman B, Ozlu N.

Chem Biol Drug Des. 2016 Dec;88(6):783-794. doi: 10.1111/cbdd.12816. Epub 2016 Aug 20.

PMID:
27390292
21.

Long noncoding RNA (lincRNA), a new paradigm in gene expression control.

Deniz E, Erman B.

Funct Integr Genomics. 2017 May;17(2-3):135-143. doi: 10.1007/s10142-016-0524-x. Epub 2016 Sep 28. Review.

PMID:
27681237
22.

Course of IL-2-inducible T-cell kinase deficiency in a family: lymphomatoid granulomatosis, lymphoma and allogeneic bone marrow transplantation in one sibling; and death in the other.

Çağdaş D, Erman B, Hanoğlu D, Tavil B, Kuşkonmaz B, Aydın B, Akyüz C, Uçkan D, Sanal Ö, Tezcan I.

Bone Marrow Transplant. 2017 Jan;52(1):126-129. doi: 10.1038/bmt.2016.185. Epub 2016 Jul 25. No abstract available.

PMID:
27454071
23.

Statins and IL-1β, IL-10, and MPO Levels in Gingival Crevicular Fluid: Preliminary Results.

Cicek Ari V, Ilarslan YD, Erman B, Sarkarati B, Tezcan I, Karabulut E, Oz SG, Tanriover MD, Sengun D, Berker E.

Inflammation. 2016 Aug;39(4):1547-57. doi: 10.1007/s10753-016-0390-7.

PMID:
27290718
24.

Universal features of fluctuations in globular proteins.

Erman B.

Proteins. 2016 Jun;84(6):721-5. doi: 10.1002/prot.25032. Epub 2016 Mar 24.

PMID:
26971570
25.

Screening of new antileukemic agents from essential oils of algae extracts and computational modeling of their interactions with intracellular signaling nodes.

Atasever-Arslan B, Yilancioglu K, Kalkan Z, Timucin AC, Gür H, Isik FB, Deniz E, Erman B, Cetiner S.

Eur J Pharm Sci. 2016 Feb 15;83:120-31. doi: 10.1016/j.ejps.2015.12.001. Epub 2015 Dec 18.

PMID:
26709080
26.

Successful outcome with second hematopoietic stem cell transplantation in a patient with IL-10R deficiency.

Kuşkonmaz B, Ayvaz D, Aydemir Y, Erman B, Tavil B, Özen H, Tezcan I, Çetinkaya DU.

Bone Marrow Transplant. 2016 Apr;51(4):615-6. doi: 10.1038/bmt.2015.310. Epub 2015 Dec 21. No abstract available.

PMID:
26691419
27.

Cyclophilin40 isomerase activity is regulated by a temperature-dependent allosteric interaction with Hsp90.

Blackburn EA, Wear MA, Landré V, Narayan V, Ning J, Erman B, Ball KL, Walkinshaw MD.

Biosci Rep. 2015 Sep 1;35(5). pii: e00258. doi: 10.1042/BSR20150124.

28.

A Molecular Dynamics Study of Allosteric Transitions in Leishmania mexicana Pyruvate Kinase.

Naithani A, Taylor P, Erman B, Walkinshaw MD.

Biophys J. 2015 Sep 15;109(6):1149-56. doi: 10.1016/j.bpj.2015.05.040. Epub 2015 Jul 22.

29.

Unified Modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes.

Bozkurt Y, Demir A, Erman B, Gül A.

Comput Math Methods Med. 2015;2015:893507. doi: 10.1155/2015/893507. Epub 2015 May 28.

30.

STK4 (MST1) deficiency in two siblings with autoimmune cytopenias: A novel mutation.

Halacli SO, Ayvaz DC, Sun-Tan C, Erman B, Uz E, Yilmaz DY, Ozgul K, Tezcan İ, Sanal O.

Clin Immunol. 2015 Dec;161(2):316-23. doi: 10.1016/j.clim.2015.06.010. Epub 2015 Jun 25.

PMID:
26117625
32.

Combined immunodeficiency with CD4 lymphopenia and sclerosing cholangitis caused by a novel loss-of-function mutation affecting IL21R.

Erman B, Bilic I, Hirschmugl T, Salzer E, Çagdas D, Esenboga S, Akcoren Z, Sanal O, Tezcan I, Boztug K.

Haematologica. 2015 Jun;100(6):e216-9. doi: 10.3324/haematol.2014.120980. Epub 2015 Mar 13. No abstract available.

33.

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function.

Keskin N, Deniz E, Eryilmaz J, Un M, Batur T, Ersahin T, Cetin Atalay R, Sakaguchi S, Ellmeier W, Erman B.

Mol Cell Biol. 2015 May;35(10):1741-53. doi: 10.1128/MCB.01475-14. Epub 2015 Mar 9.

34.

Effects of ligand binding upon flexibility of proteins.

Erman B.

Proteins. 2015 May;83(5):805-8. doi: 10.1002/prot.24785. Epub 2015 Mar 25.

PMID:
25737428
35.

Mode coupling points to functionally important residues in myosin II.

Varol O, Yuret D, Erman B, Kabakçıoğlu A.

Proteins. 2014 Sep;82(9):1777-86. doi: 10.1002/prot.24531. Epub 2014 Mar 31.

PMID:
24677138
36.

Oxidative stress is a mediator for increased lipid accumulation in a newly isolated Dunaliella salina strain.

Yilancioglu K, Cokol M, Pastirmaci I, Erman B, Cetiner S.

PLoS One. 2014 Mar 20;9(3):e91957. doi: 10.1371/journal.pone.0091957. eCollection 2014.

37.

Self-reported recall and daily diary-recorded measures of weight monitoring adherence: associations with heart failure-related hospitalization.

Jones CD, Holmes GM, DeWalt DA, Erman B, Wu JR, Cene CW, Baker DW, Schillinger D, Ruo B, Bibbins-Domingo K, Macabasco-O'Connell A, Hawk V, Broucksou K, Pignone M.

BMC Cardiovasc Disord. 2014 Jan 31;14:12. doi: 10.1186/1471-2261-14-12.

38.

Conformational transitions in the Ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model.

Bayrak CS, Erman B.

Mol Biosyst. 2014 Mar 4;10(3):663-71. doi: 10.1039/c3mb70433e. Epub 2014 Jan 17.

PMID:
24442235
39.

A single-item self-report medication adherence question predicts hospitalisation and death in patients with heart failure.

Wu JR, DeWalt DA, Baker DW, Schillinger D, Ruo B, Bibbins-Domingo K, Macabasco-O'Connell A, Holmes GM, Broucksou KA, Erman B, Hawk V, Cene CW, Jones CD, Pignone M.

J Clin Nurs. 2014 Sep;23(17-18):2554-64. doi: 10.1111/jocn.12471. Epub 2013 Dec 20.

40.

Turkey must end violent response to protests.

Altindis E, Alpar MA, Aksay E, Beckwith J, Bökel C, Curl RF, Darnell RB, Elledge SJ, Erman B, Frahm J, Goff SP, Greengard P, Hoffmann R, Ilhan B, Kaslin J, Lipkin SM, Poulopoulou C, Raz E, Rubin MA, Salturk M, Schrock RR, Trautmann A, Unutmaz D, Weinstein H, Kizil C.

Science. 2013 Jul 19;341(6143):236. doi: 10.1126/science.341.6143.236-a. No abstract available. Erratum in: Science. 2013 Aug 30;341(6149):959.

PMID:
23869001
41.

Effects of micro environmental factors on natural killer activity (NK) of beta thalassemia major patients.

Atasever Arslan B, Erdem-Kuruca S, Karakas Z, Erman B, Ergen A.

Cell Immunol. 2013 Apr;282(2):93-9. doi: 10.1016/j.cellimm.2013.04.012. Epub 2013 May 4.

PMID:
23770717
42.

Foxp3 transcription factor is proapoptotic and lethal to developing regulatory T cells unless counterbalanced by cytokine survival signals.

Tai X, Erman B, Alag A, Mu J, Kimura M, Katz G, Guinter T, McCaughtry T, Etzensperger R, Feigenbaum L, Singer DS, Singer A.

Immunity. 2013 Jun 27;38(6):1116-28. doi: 10.1016/j.immuni.2013.02.022. Epub 2013 Jun 6.

43.

Reach, usage, and effectiveness of a Medicaid patient navigator intervention to increase colorectal cancer screening, Cape Fear, North Carolina, 2011.

Leone LA, Reuland DS, Lewis CL, Ingle M, Erman B, Summers TJ, Dubard CA, Pignone MP.

Prev Chronic Dis. 2013 May 23;10:E82. doi: 10.5888/pcd10.120221.

44.

Computational and experimental investigation of DNA repair protein photolyase interactions with low molecular weight drugs.

Azizoğlu S, Kizilel R, Marušič M, Kavakli IH, Erman B, Kizilel S.

J Mol Recognit. 2013 Jul;26(7):297-307. doi: 10.1002/jmr.2258.

PMID:
23657985
45.

Necessity of keratinized tissues for dental implants: a clinical, immunological, and radiographic study.

Buyukozdemir Askin S, Berker E, Akincibay H, Uysal S, Erman B, Tezcan İ, Karabulut E.

Clin Implant Dent Relat Res. 2015 Feb;17(1):1-12. doi: 10.1111/cid.12079. Epub 2013 Apr 30.

PMID:
23631746
46.

A fast approximate method of identifying paths of allosteric communication in proteins.

Erman B.

Proteins. 2013 Jul;81(7):1097-101. doi: 10.1002/prot.24284. Epub 2013 Apr 20.

PMID:
23508936
47.

Low literacy is associated with increased risk of hospitalization and death among individuals with heart failure.

Wu JR, Holmes GM, DeWalt DA, Macabasco-O'Connell A, Bibbins-Domingo K, Ruo B, Baker DW, Schillinger D, Weinberger M, Broucksou KA, Erman B, Jones CD, Cene CW, Pignone M.

J Gen Intern Med. 2013 Sep;28(9):1174-80. doi: 10.1007/s11606-013-2394-4. Epub 2013 Mar 12.

48.

CD81 interacts with the T cell receptor to suppress signaling.

Cevik SI, Keskin N, Belkaya S, Ozlu MI, Deniz E, Tazebay UH, Erman B.

PLoS One. 2012;7(11):e50396. doi: 10.1371/journal.pone.0050396. Epub 2012 Nov 30.

49.

Conditional deletion of cytokine receptor chains reveals that IL-7 and IL-15 specify CD8 cytotoxic lineage fate in the thymus.

McCaughtry TM, Etzensperger R, Alag A, Tai X, Kurtulus S, Park JH, Grinberg A, Love P, Feigenbaum L, Erman B, Singer A.

J Exp Med. 2012 Nov 19;209(12):2263-76. doi: 10.1084/jem.20121505. Epub 2012 Oct 29.

50.

Predicting most probable conformations of a given peptide sequence in the random coil state.

Bayrak CS, Erman B.

Mol Biosyst. 2012 Nov;8(11):3010-6. doi: 10.1039/c2mb25181g. Epub 2012 Sep 6.

PMID:
22955874

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