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Database shares that transform research subjects into partners.

Kain R, Kahn S, Thompson D, Lewis D, Barker D, Bustamante C, Cabou C, Casdin A, Garcia F, Paragas J, Patrinos A, Rajagopal A, Terry SF, Van Zeeland A, Yu E, Erlich Y, Barry D.

Nat Biotechnol. 2019 Oct;37(10):1112-1115. doi: 10.1038/s41587-019-0278-9. No abstract available.


Robust, efficient, and broadband SHG of ultrashort pulses in composite crystals.

Erlich Y, Rangelov A, Montemezzani G, Suchowski H.

Opt Lett. 2019 Aug 1;44(15):3837-3840. doi: 10.1364/OL.44.003837.


Estimating variance components in population scale family trees.

Shor T, Kalka I, Geiger D, Erlich Y, Weissbrod O.

PLoS Genet. 2019 May 9;15(5):e1008124. doi: 10.1371/journal.pgen.1008124. eCollection 2019 May.


Acne and obesity: A nationwide study of 600,404 adolescents.

Snast I, Dalal A, Twig G, Astman N, Kedem R, Levin D, Erlich Y, Leshem YA, Lapidoth M, Hodak E, Levi A.

J Am Acad Dermatol. 2019 Sep;81(3):723-729. doi: 10.1016/j.jaad.2019.04.009. Epub 2019 Apr 9.


FactorialHMM: fast and exact inference in factorial hidden Markov models.

Schweiger R, Erlich Y, Carmi S.

Bioinformatics. 2019 Jun 1;35(12):2162-2164. doi: 10.1093/bioinformatics/bty944.


Identity inference of genomic data using long-range familial searches.

Erlich Y, Shor T, Pe'er I, Carmi S.

Science. 2018 Nov 9;362(6415):690-694. doi: 10.1126/science.aau4832. Epub 2018 Oct 11.


Quantitative analysis of population-scale family trees with millions of relatives.

Kaplanis J, Gordon A, Shor T, Weissbrod O, Geiger D, Wahl M, Gershovits M, Markus B, Sheikh M, Gymrek M, Bhatia G, MacArthur DG, Price AL, Erlich Y.

Science. 2018 Apr 13;360(6385):171-175. doi: 10.1126/science.aam9309. Epub 2018 Mar 1.


DNA.Land is a framework to collect genomes and phenomes in the era of abundant genetic information.

Yuan J, Gordon A, Speyer D, Aufrichtig R, Zielinski D, Pickrell J, Erlich Y.

Nat Genet. 2018 Feb;50(2):160-165. doi: 10.1038/s41588-017-0021-8. No abstract available.


Rapid re-identification of human samples using portable DNA sequencing.

Zaaijer S, Gordon A, Speyer D, Piccone R, Groen SC, Erlich Y.

Elife. 2017 Nov 28;6. pii: e27798. doi: 10.7554/eLife.27798.


Functionalized Self-Assembled Monolayers Bearing Diiminate Complexes Immobilized through Covalently Anchored Ligands.

Rozen E, Erlich Y, Reesbeck ME, Holland PL, Sukenik CN.

Langmuir. 2018 Nov 13;34(45):13472-13480. doi: 10.1021/acs.langmuir.7b00984. Epub 2017 Nov 2.


Interpreting short tandem repeat variations in humans using mutational constraint.

Gymrek M, Willems T, Reich D, Erlich Y.

Nat Genet. 2017 Oct;49(10):1495-1501. doi: 10.1038/ng.3952. Epub 2017 Sep 11.


Genome-wide profiling of heritable and de novo STR variations.

Willems T, Zielinski D, Yuan J, Gordon A, Gymrek M, Erlich Y.

Nat Methods. 2017 Jun;14(6):590-592. doi: 10.1038/nmeth.4267. Epub 2017 Apr 24.


DNA Compass: a secure, client-side site for navigating personal genetic information.

Curnin C, Gordon A, Erlich Y.

Bioinformatics. 2017 Jul 15;33(14):2191-2193. doi: 10.1093/bioinformatics/btx135.


The prevalence of medical symptoms in military aircrew.

Gordon B, Erlich Y, Carmon E.

Disaster Mil Med. 2017 Feb 2;3:3. doi: 10.1186/s40696-017-0031-1. eCollection 2017.


DNA Fountain enables a robust and efficient storage architecture.

Erlich Y, Zielinski D.

Science. 2017 Mar 3;355(6328):950-954. doi: 10.1126/science.aaj2038.


Case-control association mapping by proxy using family history of disease.

Liu JZ, Erlich Y, Pickrell JK.

Nat Genet. 2017 Mar;49(3):325-331. doi: 10.1038/ng.3766. Epub 2017 Jan 16.


The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D.

Nature. 2016 Oct 13;538(7624):201-206. doi: 10.1038/nature18964. Epub 2016 Sep 21.


Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates.

Willems T, Gymrek M, Poznik GD, Tyler-Smith C; 1000 Genomes Project Chromosome Y Group, Erlich Y.

Am J Hum Genet. 2016 May 5;98(5):919-933. doi: 10.1016/j.ajhg.2016.04.001. Epub 2016 Apr 25.


Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.

Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, Gymrek M, Malhotra A, Louzada S, Desalle R, Ritchie GR, Cerveira E, Fitzgerald TW, Garrison E, Marcketta A, Mittelman D, Romanovitch M, Zhang C, Zheng-Bradley X, Abecasis GR, McCarroll SA, Flicek P, Underhill PA, Coin L, Zerbino DR, Yang F, Lee C, Clarke L, Auton A, Erlich Y, Handsaker RE; 1000 Genomes Project Consortium, Bustamante CD, Tyler-Smith C.

Nat Genet. 2016 Jun;48(6):593-9. doi: 10.1038/ng.3559. Epub 2016 Apr 25. Review.


Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.

Quilez J, Guilmatre A, Garg P, Highnam G, Gymrek M, Erlich Y, Joshi RS, Mittelman D, Sharp AJ.

Nucleic Acids Res. 2016 May 5;44(8):3750-62. doi: 10.1093/nar/gkw219. Epub 2016 Apr 7.


Using mobile sequencers in an academic classroom.

Zaaijer S; Columbia University Ubiquitous Genomics 2015 class, Erlich Y.

Elife. 2016 Apr 7;5. pii: e14258. doi: 10.7554/eLife.14258.


Highly efficient de novo mutant identification in a Sorghum bicolor TILLING population using the ComSeq approach.

Nida H, Blum S, Zielinski D, Srivastava DA, Elbaum R, Xin Z, Erlich Y, Fridman E, Shental N.

Plant J. 2016 May;86(4):349-59. doi: 10.1111/tpj.13161.


The Ecology of Medical Care Among Israeli Military Aviators.

Gordon B, Levy Y, Yemini T, Carmon E, Erlich Y, Hermoni D.

Aerosp Med Hum Perform. 2016 Dec 1;87(12):1036-1040. doi: 10.3357/AMHP.4406.2016.


Abundant contribution of short tandem repeats to gene expression variation in humans.

Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y.

Nat Genet. 2016 Jan;48(1):22-9. doi: 10.1038/ng.3461. Epub 2015 Dec 7.


A vision for ubiquitous sequencing.

Erlich Y.

Genome Res. 2015 Oct;25(10):1411-6. doi: 10.1101/gr.191692.115.


Mondor's disease: a unique cause of penile pain.

Dalal A, Erlich Y.

J R Army Med Corps. 2016 Feb;162(1):66-7. doi: 10.1136/jramc-2014-000362. Epub 2015 Feb 19.


Redefining genomic privacy: trust and empowerment.

Erlich Y, Williams JB, Glazer D, Yocum K, Farahany N, Olson M, Narayanan A, Stein LD, Witkowski JA, Kain RC.

PLoS Biol. 2014 Nov 4;12(11):e1001983. doi: 10.1371/journal.pbio.1001983. eCollection 2014 Nov.


The landscape of human STR variation.

Willems T, Gymrek M, Highnam G; 1000 Genomes Project Consortium, Mittelman D, Erlich Y.

Genome Res. 2014 Nov;24(11):1894-904. doi: 10.1101/gr.177774.114. Epub 2014 Aug 18.


iPipet: sample handling using a tablet.

Zielinski D, Gordon A, Zaks BL, Erlich Y.

Nat Methods. 2014 Aug;11(8):784-5. doi: 10.1038/nmeth.3028. No abstract available.


OTX2 duplication is implicated in hemifacial microsomia.

Zielinski D, Markus B, Sheikh M, Gymrek M, Chu C, Zaks M, Srinivasan B, Hoffman JD, Aizenbud D, Erlich Y.

PLoS One. 2014 May 9;9(5):e96788. doi: 10.1371/journal.pone.0096788. eCollection 2014.


Routes for breaching and protecting genetic privacy.

Erlich Y, Narayanan A.

Nat Rev Genet. 2014 Jun;15(6):409-21. doi: 10.1038/nrg3723. Epub 2014 May 8. Review. Erratum in: Nat Rev Genet. 2014 Aug;15(8):570.


Profiling short tandem repeats from short reads.

Gymrek M, Erlich Y.

Methods Mol Biol. 2013;1038:113-35. doi: 10.1007/978-1-62703-514-9_7.


Identifying personal genomes by surname inference.

Gymrek M, McGuire AL, Golan D, Halperin E, Erlich Y.

Science. 2013 Jan 18;339(6117):321-4. doi: 10.1126/science.1229566.


Back to the family: a renewed approach to rare variant studies.

Zielinski D, Gymrek M, Erlich Y.

Genome Med. 2012 Dec 19;4(12):97. doi: 10.1186/gm398. eCollection 2012.


Weighted pooling--practical and cost-effective techniques for pooled high-throughput sequencing.

Golan D, Erlich Y, Rosset S.

Bioinformatics. 2012 Jun 15;28(12):i197-206. doi: 10.1093/bioinformatics/bts208.


lobSTR: A short tandem repeat profiler for personal genomes.

Gymrek M, Golan D, Rosset S, Erlich Y.

Genome Res. 2012 Jun;22(6):1154-62. doi: 10.1101/gr.135780.111. Epub 2012 Apr 20.


Using DNA sequencers as stethoscopes.

Gymrek M, Erlich Y.

Genome Med. 2011 Nov 21;3(11):73. doi: 10.1186/gm289.


Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis.

Erlich Y, Edvardson S, Hodges E, Zenvirt S, Thekkat P, Shaag A, Dor T, Hannon GJ, Elpeleg O.

Genome Res. 2011 May;21(5):658-64. doi: 10.1101/gr.117143.110. Epub 2011 Apr 12.


Blood ties: chimerism can mask twin discordance in high-throughput sequencing.

Erlich Y.

Twin Res Hum Genet. 2011 Apr;14(2):137-43. doi: 10.1375/twin.14.2.137.


Compressed Genotyping.

Erlich Y, Gordon A, Brand M, Hannon GJ, Mitra PP.

IEEE Trans Inf Theory. 2010 Feb;56(2):706-723.


Joubert syndrome 2 (JBTS2) in Ashkenazi Jews is associated with a TMEM216 mutation.

Edvardson S, Shaag A, Zenvirt S, Erlich Y, Hannon GJ, Shanske AL, Gomori JM, Ekstein J, Elpeleg O.

Am J Hum Genet. 2010 Jan;86(1):93-7. doi: 10.1016/j.ajhg.2009.12.007. Epub 2009 Dec 31. Erratum in: Am J Hum Genet. 2010 Feb;86(2):294. Shanske, Alan L [added].


Hierarchical rules for Argonaute loading in Drosophila.

Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ.

Mol Cell. 2009 Nov 13;36(3):445-56. doi: 10.1016/j.molcel.2009.09.028.


Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs.

Rechavi O, Erlich Y, Amram H, Flomenblit L, Karginov FV, Goldstein I, Hannon GJ, Kloog Y.

Genes Dev. 2009 Aug 15;23(16):1971-9. doi: 10.1101/gad.1789609.


DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis.

Erlich Y, Chang K, Gordon A, Ronen R, Navon O, Rooks M, Hannon GJ.

Genome Res. 2009 Jul;19(7):1243-53. doi: 10.1101/gr.092957.109. Epub 2009 May 15.


Alta-Cyclic: a self-optimizing base caller for next-generation sequencing.

Erlich Y, Mitra PP, delaBastide M, McCombie WR, Hannon GJ.

Nat Methods. 2008 Aug;5(8):679-82. doi: 10.1038/nmeth.1230. Epub 2008 Jul 6.


A role for microRNAs in maintenance of mouse mammary epithelial progenitor cells.

Ibarra I, Erlich Y, Muthuswamy SK, Sachidanandam R, Hannon GJ.

Genes Dev. 2007 Dec 15;21(24):3238-43.


Outbreak of Kingella kingae skeletal system infections in children in daycare.

Yagupsky P, Erlich Y, Ariela S, Trefler R, Porat N.

Pediatr Infect Dis J. 2006 Jun;25(6):526-32.


Self-focusing Distance of Very High Power Laser Pulses.

Fibich G, Eisenmann S, Ilan B, Erlich Y, Fraenkel M, Henis Z, Gaeta A, Zigler A.

Opt Express. 2005 Jul 25;13(15):5897-903.


Sweet's syndrome presenting as acute episcleritis.

Levy J, Schneck M, Erlich Y, Lifshitz T.

Can J Ophthalmol. 2005 Feb;40(1):90-2. No abstract available.


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