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Items: 1 to 50 of 133

1.

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations.

Tett A, Huang KD, Asnicar F, Fehlner-Peach H, Pasolli E, Karcher N, Armanini F, Manghi P, Bonham K, Zolfo M, De Filippis F, Magnabosco C, Bonneau R, Lusingu J, Amuasi J, Reinhard K, Rattei T, Boulund F, Engstrand L, Zink A, Collado MC, Littman DR, Eibach D, Ercolini D, Rota-Stabelli O, Huttenhower C, Maixner F, Segata N.

Cell Host Microbe. 2019 Sep 24. pii: S1931-3128(19)30427-5. doi: 10.1016/j.chom.2019.08.018. [Epub ahead of print]

PMID:
31607556
2.

Advancing integration of data on food microbiome studies: FoodMicrobionet 3.1, a major upgrade of the FoodMicrobionet database.

Parente E, De Filippis F, Ercolini D, Ricciardi A, Zotta T.

Int J Food Microbiol. 2019 Sep 16;305:108249. doi: 10.1016/j.ijfoodmicro.2019.108249. Epub 2019 Jun 11.

PMID:
31207407
3.

Coffee prevents fatty liver disease induced by a high-fat diet by modulating pathways of the gut-liver axis.

Vitaglione P, Mazzone G, Lembo V, D'Argenio G, Rossi A, Guido M, Savoia M, Salomone F, Mennella I, De Filippis F, Ercolini D, Caporaso N, Morisco F.

J Nutr Sci. 2019 Apr 22;8:e15. doi: 10.1017/jns.2019.10. eCollection 2019.

4.

Influence of microbial communities on the chemical and sensory features of Falanghina sweet passito wines.

De Filippis F, Aponte M, Piombino P, Lisanti MT, Moio L, Ercolini D, Blaiotta G.

Food Res Int. 2019 Jun;120:740-747. doi: 10.1016/j.foodres.2018.11.033. Epub 2018 Nov 19.

PMID:
31000293
5.

Altered gut microbiota and endocannabinoid system tone in vitamin D deficiency-mediated chronic pain.

Guida F, Boccella S, Belardo C, Iannotta M, Piscitelli F, De Filippis F, Paino S, Ricciardi F, Siniscalco D, Marabese I, Luongo L, Ercolini D, Di Marzo V, Maione S.

Brain Behav Immun. 2019 Apr 3. pii: S0889-1591(18)31247-9. doi: 10.1016/j.bbi.2019.04.006. [Epub ahead of print]

6.

Probiotic potential of a Lactobacillus rhamnosus cheese isolate and its effect on the fecal microbiota of healthy volunteers.

Bautista-Gallego J, Ferrocino I, Botta C, Ercolini D, Cocolin L, Rantsiou K.

Food Res Int. 2019 May;119:305-314. doi: 10.1016/j.foodres.2019.02.004. Epub 2019 Feb 5.

PMID:
30884661
7.

Laboratory medicine: health evaluation in elite athletes.

Lombardo B, Izzo V, Terracciano D, Ranieri A, Mazzaccara C, Fimiani F, Cesaro A, Gentile L, Leggiero E, Pero R, Izzo B, D'Alicandro AC, Ercolini D, D'Alicandro G, Frisso G, Pastore L, Calabrò P, Scudiero O.

Clin Chem Lab Med. 2019 Sep 25;57(10):1450-1473. doi: 10.1515/cclm-2018-1107. Review.

PMID:
30835249
8.

Gut Microbiome as Target for Innovative Strategies Against Food Allergy.

Berni Canani R, Paparo L, Nocerino R, Di Scala C, Della Gatta G, Maddalena Y, Buono A, Bruno C, Voto L, Ercolini D.

Front Immunol. 2019 Feb 15;10:191. doi: 10.3389/fimmu.2019.00191. eCollection 2019. Review.

9.

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets.

De Filippis F, Pasolli E, Tett A, Tarallo S, Naccarati A, De Angelis M, Neviani E, Cocolin L, Gobbetti M, Segata N, Ercolini D.

Cell Host Microbe. 2019 Mar 13;25(3):444-453.e3. doi: 10.1016/j.chom.2019.01.004. Epub 2019 Feb 21.

PMID:
30799264
10.

Large-scale mapping of microbial diversity in artisanal Brazilian cheeses.

Kamimura BA, De Filippis F, Sant'Ana AS, Ercolini D.

Food Microbiol. 2019 Jun;80:40-49. doi: 10.1016/j.fm.2018.12.014. Epub 2018 Dec 26.

PMID:
30704595
11.

A volatilomics approach for off-line discrimination of minced beef and pork meat and their admixture using HS-SPME GC/MS in tandem with multivariate data analysis.

Pavlidis DE, Mallouchos A, Ercolini D, Panagou EZ, Nychas GE.

Meat Sci. 2019 May;151:43-53. doi: 10.1016/j.meatsci.2019.01.003. Epub 2019 Jan 21.

PMID:
30685510
12.

Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype.

Vernocchi P, Del Chierico F, Russo A, Majo F, Rossitto M, Valerio M, Casadei L, La Storia A, De Filippis F, Rizzo C, Manetti C, Paci P, Ercolini D, Marini F, Fiscarelli EV, Dallapiccola B, Lucidi V, Miccheli A, Putignani L.

PLoS One. 2018 Dec 6;13(12):e0208171. doi: 10.1371/journal.pone.0208171. eCollection 2018.

13.

The Intestinal Microbiota of Hermetia illucens Larvae Is Affected by Diet and Shows a Diverse Composition in the Different Midgut Regions.

Bruno D, Bonelli M, De Filippis F, Di Lelio I, Tettamanti G, Casartelli M, Ercolini D, Caccia S.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e01864-18. doi: 10.1128/AEM.01864-18. Print 2019 Jan 15.

14.

Strain-Level Diversity Analysis of Pseudomonas fragi after In Situ Pangenome Reconstruction Shows Distinctive Spoilage-Associated Metabolic Traits Clearly Selected by Different Storage Conditions.

De Filippis F, La Storia A, Villani F, Ercolini D.

Appl Environ Microbiol. 2018 Dec 13;85(1). pii: e02212-18. doi: 10.1128/AEM.02212-18. Print 2019 Jan 1.

15.

Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy.

Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D.

Sci Rep. 2018 Aug 21;8(1):12500. doi: 10.1038/s41598-018-30428-3.

16.

Profiling white wine seed vinegar bacterial diversity through viable counting, metagenomic sequencing and PCR-DGGE.

Milanović V, Osimani A, Garofalo C, De Filippis F, Ercolini D, Cardinali F, Taccari M, Aquilanti L, Clementi F.

Int J Food Microbiol. 2018 Dec 2;286:66-74. doi: 10.1016/j.ijfoodmicro.2018.07.022. Epub 2018 Jul 20.

PMID:
30048915
17.

Dietary Interventions to Modulate the Gut Microbiome-How Far Away Are We From Precision Medicine.

De Filippis F, Vitaglione P, Cuomo R, Berni Canani R, Ercolini D.

Inflamm Bowel Dis. 2018 Sep 15;24(10):2142-2154. doi: 10.1093/ibd/izy080. Review.

PMID:
29668914
18.

Revealing the microbiota of marketed edible insects through PCR-DGGE, metagenomic sequencing and real-time PCR.

Osimani A, Milanović V, Garofalo C, Cardinali F, Roncolini A, Sabbatini R, De Filippis F, Ercolini D, Gabucci C, Petruzzelli A, Tonucci F, Clementi F, Aquilanti L.

Int J Food Microbiol. 2018 Jul 2;276:54-62. doi: 10.1016/j.ijfoodmicro.2018.04.013. Epub 2018 Apr 11.

PMID:
29665523
19.

Food Design To Feed the Human Gut Microbiota.

Ercolini D, Fogliano V.

J Agric Food Chem. 2018 Apr 18;66(15):3754-3758. doi: 10.1021/acs.jafc.8b00456. Epub 2018 Apr 5. Review.

20.

Structure of association networks in food bacterial communities.

Parente E, Zotta T, Faust K, De Filippis F, Ercolini D.

Food Microbiol. 2018 Aug;73:49-60. doi: 10.1016/j.fm.2017.12.010. Epub 2017 Dec 22.

PMID:
29526226
21.

Different temperatures select distinctive acetic acid bacteria species and promotes organic acids production during Kombucha tea fermentation.

De Filippis F, Troise AD, Vitaglione P, Ercolini D.

Food Microbiol. 2018 Aug;73:11-16. doi: 10.1016/j.fm.2018.01.008. Epub 2018 Jan 9.

PMID:
29526195
22.

Postprandial Gastrointestinal Function Differs after Acute Administration of Sourdough Compared with Brewer's Yeast Bakery Products in Healthy Adults.

Polese B, Nicolai E, Genovese D, Verlezza V, La Sala CN, Aiello M, Inglese M, Incoronato M, Sarnelli G, De Rosa T, Schiatti A, Mondelli F, Ercolini D, Cuomo R.

J Nutr. 2018 Feb 1;148(2):202-208. doi: 10.1093/jn/nxx049.

PMID:
29490103
23.

Impact of Lactobacillus curvatus 54M16 on microbiota composition and growth of Listeria monocytogenes in fermented sausages.

Giello M, La Storia A, De Filippis F, Ercolini D, Villani F.

Food Microbiol. 2018 Jun;72:1-15. doi: 10.1016/j.fm.2017.11.003. Epub 2017 Nov 8.

PMID:
29407386
24.

Recent Past, Present, and Future of the Food Microbiome.

De Filippis F, Parente E, Ercolini D.

Annu Rev Food Sci Technol. 2018 Mar 25;9:589-608. doi: 10.1146/annurev-food-030117-012312. Epub 2018 Jan 18.

PMID:
29350561
25.

A Metagenomic and in Silico Functional Prediction of Gut Microbiota Profiles May Concur in Discovering New Cystic Fibrosis Patient-Targeted Probiotics.

Vernocchi P, Del Chierico F, Quagliariello A, Ercolini D, Lucidi V, Putignani L.

Nutrients. 2017 Dec 9;9(12). pii: E1342. doi: 10.3390/nu9121342.

26.

Different Lactobacillus populations dominate in "Chorizo de León" manufacturing performed in different production plants.

Quijada NM, De Filippis F, Sanz JJ, García-Fernández MDC, Rodríguez-Lázaro D, Ercolini D, Hernández M.

Food Microbiol. 2018 Apr;70:94-102. doi: 10.1016/j.fm.2017.09.009. Epub 2017 Sep 14.

PMID:
29173645
27.

A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota.

De Filippis F, Parente E, Zotta T, Ercolini D.

Int J Food Microbiol. 2018 Jan 16;265:9-17. doi: 10.1016/j.ijfoodmicro.2017.10.028. Epub 2017 Oct 27.

PMID:
29107843
28.

Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice.

Guida F, Turco F, Iannotta M, De Gregorio D, Palumbo I, Sarnelli G, Furiano A, Napolitano F, Boccella S, Luongo L, Mazzitelli M, Usiello A, De Filippis F, Iannotti FA, Piscitelli F, Ercolini D, de Novellis V, Di Marzo V, Cuomo R, Maione S.

Brain Behav Immun. 2018 Jan;67:230-245. doi: 10.1016/j.bbi.2017.09.001. Epub 2017 Sep 7.

PMID:
28890155
29.

Metabolic gene-targeted monitoring of non-starter lactic acid bacteria during cheese ripening.

Levante A, De Filippis F, La Storia A, Gatti M, Neviani E, Ercolini D, Lazzi C.

Int J Food Microbiol. 2017 Sep 18;257:276-284. doi: 10.1016/j.ijfoodmicro.2017.07.002. Epub 2017 Jul 6.

PMID:
28735145
30.

Specific Signatures of the Gut Microbiota and Increased Levels of Butyrate in Children Treated with Fermented Cow's Milk Containing Heat-Killed Lactobacillus paracasei CBA L74.

Berni Canani R, De Filippis F, Nocerino R, Laiola M, Paparo L, Calignano A, De Caro C, Coretti L, Chiariotti L, Gilbert JA, Ercolini D.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01206-17. doi: 10.1128/AEM.01206-17. Print 2017 Oct 1.

31.

Gut Microbiota as a Target for Preventive and Therapeutic Intervention against Food Allergy.

Aitoro R, Paparo L, Amoroso A, Di Costanzo M, Cosenza L, Granata V, Di Scala C, Nocerino R, Trinchese G, Montella M, Ercolini D, Berni Canani R.

Nutrients. 2017 Jun 28;9(7). pii: E672. doi: 10.3390/nu9070672. Review.

32.

Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity.

De Filippis F, Laiola M, Blaiotta G, Ercolini D.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e00905-17. doi: 10.1128/AEM.00905-17. Print 2017 Sep 1.

33.

Microbial diversity in pitted sweet cherries (Prunus avium L.) as affected by High-Hydrostatic Pressure treatment.

Toledo Del Árbol J, Pérez Pulido R, La Storia A, Grande Burgos MJ, Lucas R, Ercolini D, Gálvez A.

Food Res Int. 2016 Nov;89(Pt 1):790-796. doi: 10.1016/j.foodres.2016.10.014. Epub 2016 Oct 12.

PMID:
28460980
34.

A Few Pseudomonas Oligotypes Dominate in the Meat and Dairy Processing Environment.

Stellato G, Utter DR, Voorhis A, De Angelis M, Eren AM, Ercolini D.

Front Microbiol. 2017 Mar 2;8:264. doi: 10.3389/fmicb.2017.00264. eCollection 2017.

35.

Exciting strain-level resolution studies of the food microbiome.

Ercolini D.

Microb Biotechnol. 2017 Jan;10(1):54-56. doi: 10.1111/1751-7915.12593. Epub 2017 Jan 3. No abstract available.

36.

Dynamics of bacterial communities during manufacture and ripening of traditional Caciocavallo of Castelfranco cheese in relation to cows' feeding.

Giello M, La Storia A, Masucci F, Di Francia A, Ercolini D, Villani F.

Food Microbiol. 2017 May;63:170-177. doi: 10.1016/j.fm.2016.11.016. Epub 2016 Nov 24.

PMID:
28040166
37.

Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns.

De Filippis F, Pellegrini N, Laghi L, Gobbetti M, Ercolini D.

Microbiome. 2016 Oct 21;4(1):57.

38.

Metagenomics insights into food fermentations.

De Filippis F, Parente E, Ercolini D.

Microb Biotechnol. 2017 Jan;10(1):91-102. doi: 10.1111/1751-7915.12421. Epub 2016 Oct 6. Review.

39.

Midgut microbiota and host immunocompetence underlie Bacillus thuringiensis killing mechanism.

Caccia S, Di Lelio I, La Storia A, Marinelli A, Varricchio P, Franzetti E, Banyuls N, Tettamanti G, Casartelli M, Giordana B, Ferré J, Gigliotti S, Ercolini D, Pennacchio F.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9486-91. doi: 10.1073/pnas.1521741113. Epub 2016 Aug 9.

40.

Polymorphism of the phosphoserine phosphatase gene in Streptococcus thermophilus and its potential use for typing and monitoring of population diversity.

Ricciardi A, De Filippis F, Zotta T, Facchiano A, Ercolini D, Parente E.

Int J Food Microbiol. 2016 Nov 7;236:138-47. doi: 10.1016/j.ijfoodmicro.2016.07.031. Epub 2016 Jul 27.

PMID:
27497152
41.

Salivary and fecal microbiota and metabolome of celiac children under gluten-free diet.

De Angelis M, Vannini L, Di Cagno R, Cavallo N, Minervini F, Francavilla R, Ercolini D, Gobbetti M.

Int J Food Microbiol. 2016 Dec 19;239:125-132. doi: 10.1016/j.ijfoodmicro.2016.07.025. Epub 2016 Jul 19. Review.

PMID:
27452636
42.

Overlap of Spoilage-Associated Microbiota between Meat and the Meat Processing Environment in Small-Scale and Large-Scale Retail Distributions.

Stellato G, La Storia A, De Filippis F, Borriello G, Villani F, Ercolini D.

Appl Environ Microbiol. 2016 Jun 13;82(13):4045-54. doi: 10.1128/AEM.00793-16. Print 2016 Jul 1.

43.

Microbiota of an Italian Grana-Like Cheese during Manufacture and Ripening, Unraveled by 16S rRNA-Based Approaches.

Alessandria V, Ferrocino I, De Filippis F, Fontana M, Rantsiou K, Ercolini D, Cocolin L.

Appl Environ Microbiol. 2016 Jun 13;82(13):3988-3995. doi: 10.1128/AEM.00999-16. Print 2016 Jul 1.

44.

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate.

De Filippis F, Genovese A, Ferranti P, Gilbert JA, Ercolini D.

Sci Rep. 2016 Feb 25;6:21871. doi: 10.1038/srep21871.

45.

FoodMicrobionet: A database for the visualisation and exploration of food bacterial communities based on network analysis.

Parente E, Cocolin L, De Filippis F, Zotta T, Ferrocino I, O'Sullivan O, Neviani E, De Angelis M, Cotter PD, Ercolini D.

Int J Food Microbiol. 2016 Feb 16;219:28-37. doi: 10.1016/j.ijfoodmicro.2015.12.001. Epub 2015 Dec 9.

PMID:
26704067
46.

From an imbalance to a new imbalance: Italian-style gluten-free diet alters the salivary microbiota and metabolome of African celiac children.

Ercolini D, Francavilla R, Vannini L, De Filippis F, Capriati T, Di Cagno R, Iacono G, De Angelis M, Gobbetti M.

Sci Rep. 2015 Dec 18;5:18571. doi: 10.1038/srep18571.

47.

Impact of Nisin-Activated Packaging on Microbiota of Beef Burgers during Storage.

Ferrocino I, Greppi A, La Storia A, Rantsiou K, Ercolini D, Cocolin L.

Appl Environ Microbiol. 2015 Nov 6;82(2):549-59. doi: 10.1128/AEM.03093-15. Print 2016 Jan 15.

48.

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome.

De Filippis F, Pellegrini N, Vannini L, Jeffery IB, La Storia A, Laghi L, Serrazanetti DI, Di Cagno R, Ferrocino I, Lazzi C, Turroni S, Cocolin L, Brigidi P, Neviani E, Gobbetti M, O'Toole PW, Ercolini D.

Gut. 2016 Nov;65(11):1812-1821. doi: 10.1136/gutjnl-2015-309957. Epub 2015 Sep 28.

PMID:
26416813
49.

The microbiota of high-moisture mozzarella cheese produced with different acidification methods.

Guidone A, Zotta T, Matera A, Ricciardi A, De Filippis F, Ercolini D, Parente E.

Int J Food Microbiol. 2016 Jan 4;216:9-17. doi: 10.1016/j.ijfoodmicro.2015.09.002. Epub 2015 Sep 9.

PMID:
26384211
50.

Changes in microbial diversity of brined green asparagus upon treatment with high hydrostatic pressure.

Toledo Del Árbol J, Pérez Pulido R, La Storia A, Grande Burgos MJ, Lucas R, Ercolini D, Gálvez A.

Int J Food Microbiol. 2016 Jan 4;216:1-8. doi: 10.1016/j.ijfoodmicro.2015.09.001. Epub 2015 Sep 9.

PMID:
26372734

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