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Highly resolved systems biology to dissect the etioplast-to-chloroplast transition in tobacco leaves.

Armarego-Marriott T, Kowalewska ŁM, Burgos A, Fischer A, Thiele W, Erban A, Strand DD, Kahlau S, Hertle A, Kopka J, Walther D, Reich Z, Schoettler MA, Bock R.

Plant Physiol. 2019 Mar 12. pii: pp.01432.2018. doi: 10.1104/pp.18.01432. [Epub ahead of print]


Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana.

Takahashi D, Gorka M, Erban A, Graf A, Kopka J, Zuther E, Hincha DK.

Sci Rep. 2019 Feb 19;9(1):2289. doi: 10.1038/s41598-019-38688-3.


Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat.

Casartelli A, Melino VJ, Baumann U, Riboni M, Suchecki R, Jayasinghe NS, Mendis H, Watanabe M, Erban A, Zuther E, Hoefgen R, Roessner U, Okamoto M, Heuer S.

Plant Mol Biol. 2019 Mar;99(4-5):477-497. doi: 10.1007/s11103-019-00831-z. Epub 2019 Feb 5.


Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis.

Zuther E, Schaarschmidt S, Fischer A, Erban A, Pagter M, Mubeen U, Giavalisco P, Kopka J, Sprenger H, Hincha DK.

Plant Cell Environ. 2019 Mar;42(3):854-873. doi: 10.1111/pce.13502. Epub 2019 Jan 28.


Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species.

Zuther E, Lee YP, Erban A, Kopka J, Hincha DK.

Adv Exp Med Biol. 2018;1081:81-98. doi: 10.1007/978-981-13-1244-1_5. Review.


Ion-dependent metabolic responses of Vicia faba L. to salt stress.

Richter JA, Behr JH, Erban A, Kopka J, Zörb C.

Plant Cell Environ. 2019 Jan;42(1):295-309. doi: 10.1111/pce.13386. Epub 2018 Aug 9.


NLR Mutations Suppressing Immune Hybrid Incompatibility and Their Effects on Disease Resistance.

Atanasov KE, Liu C, Erban A, Kopka J, Parker JE, Alcázar R.

Plant Physiol. 2018 Jul;177(3):1152-1169. doi: 10.1104/pp.18.00462. Epub 2018 May 23.


Acquisition of Volatile Compounds by Gas Chromatography-Mass Spectrometry (GC-MS).

Vallarino JG, Erban A, Fehrle I, Fernie AR, Kopka J, Osorio S.

Methods Mol Biol. 2018;1778:225-239. doi: 10.1007/978-1-4939-7819-9_16.


Transcriptome and metabolome analyses provide insights into root and root-released organic anion responses to phosphorus deficiency in oat.

Wang Y, Lysøe E, Armarego-Marriott T, Erban A, Paruch L, van Eerde A, Bock R, Liu-Clarke J.

J Exp Bot. 2018 Jun 27;69(15):3759-3771. doi: 10.1093/jxb/ery176.


The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp. PCC 6803.

Rübsam H, Kirsch F, Reimann V, Erban A, Kopka J, Hagemann M, Hess WR, Klähn S.

Environ Microbiol. 2018 Aug;20(8):2757-2768. doi: 10.1111/1462-2920.14079. Epub 2018 Mar 26.


Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Methods Mol Biol. 2018;1744:339-358. doi: 10.1007/978-1-4939-7672-0_28.


Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.

Beine-Golovchuk O, Firmino AAP, Dąbrowska A, Schmidt S, Erban A, Walther D, Zuther E, Hincha DK, Kopka J.

Plant Physiol. 2018 Mar;176(3):2251-2276. doi: 10.1104/pp.17.01448. Epub 2018 Jan 30.


Primed primary metabolism in systemic leaves: a functional systems analysis.

Schwachtje J, Fischer A, Erban A, Kopka J.

Sci Rep. 2018 Jan 9;8(1):216. doi: 10.1038/s41598-017-18397-5.


Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply.

Heyneke E, Watanabe M, Erban A, Duan G, Buchner P, Walther D, Kopka J, Hawkesford MJ, Hoefgen R.

Front Plant Sci. 2017 Nov 29;8:2048. doi: 10.3389/fpls.2017.02048. eCollection 2017.


Metabolite and transcript markers for the prediction of potato drought tolerance.

Sprenger H, Erban A, Seddig S, Rudack K, Thalhammer A, Le MQ, Walther D, Zuther E, Köhl KI, Kopka J, Hincha DK.

Plant Biotechnol J. 2018 Apr;16(4):939-950. doi: 10.1111/pbi.12840. Epub 2017 Oct 17.


Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana.

Pagter M, Alpers J, Erban A, Kopka J, Zuther E, Hincha DK.

BMC Genomics. 2017 Sep 16;18(1):731. doi: 10.1186/s12864-017-4126-3.


Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles.

Glaubitz U, Li X, Schaedel S, Erban A, Sulpice R, Kopka J, Hincha DK, Zuther E.

Plant Cell Environ. 2017 Jan;40(1):121-137. doi: 10.1111/pce.12850. Epub 2016 Nov 28.


The drought response of potato reference cultivars with contrasting tolerance.

Sprenger H, Kurowsky C, Horn R, Erban A, Seddig S, Rudack K, Fischer A, Walther D, Zuther E, Köhl K, Hincha DK, Kopka J.

Plant Cell Environ. 2016 Nov;39(11):2370-2389. doi: 10.1111/pce.12780. Epub 2016 Sep 6.


A new synthetic biology approach allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop.

Fuentes P, Zhou F, Erban A, Karcher D, Kopka J, Bock R.

Elife. 2016 Jun 14;5. pii: e13664. doi: 10.7554/eLife.13664.


Functional specialization of one copy of glutamine phosphoribosyl pyrophosphate amidotransferase in ureide production from symbiotically fixed nitrogen in Phaseolus vulgaris.

Coleto I, Trenas AT, Erban A, Kopka J, Pineda M, Alamillo JM.

Plant Cell Environ. 2016 Aug;39(8):1767-79. doi: 10.1111/pce.12743. Epub 2016 May 5.


Increasing abscisic acid levels by immunomodulation in barley grains induces precocious maturation without changing grain composition.

Staroske N, Conrad U, Kumlehn J, Hensel G, Radchuk R, Erban A, Kopka J, Weschke W, Weber H.

J Exp Bot. 2016 Apr;67(9):2675-87. doi: 10.1093/jxb/erw102. Epub 2016 Mar 7.


Global Metabolic Profiling of Arabidopsis Polyamine Oxidase 4 (AtPAO4) Loss-of-Function Mutants Exhibiting Delayed Dark-Induced Senescence.

Sequera-Mutiozabal MI, Erban A, Kopka J, Atanasov KE, Bastida J, Fotopoulos V, Alcázar R, Tiburcio AF.

Front Plant Sci. 2016 Feb 18;7:173. doi: 10.3389/fpls.2016.00173. eCollection 2016.


Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics.

Mumm R, Hageman JA, Calingacion MN, de Vos RCH, Jonker HH, Erban A, Kopka J, Hansen TH, Laursen KH, Schjoerring JK, Ward JL, Beale MH, Jongee S, Rauf A, Habibi F, Indrasari SD, Sakhan S, Ramli A, Romero M, Reinke RF, Ohtsubo K, Boualaphanh C, Fitzgerald MA, Hall RD.

Metabolomics. 2016;12:38. doi: 10.1007/s11306-015-0925-1. Epub 2016 Jan 23.


Integrative "omic" analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria × ananassa 'Korona'.

Koehler G, Rohloff J, Wilson RC, Kopka J, Erban A, Winge P, Bones AM, Davik J, Alsheikh MK, Randall SK.

Front Plant Sci. 2015 Oct 15;6:826. doi: 10.3389/fpls.2015.00826. eCollection 2015.


Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells.

Gaude N, Bortfeld S, Erban A, Kopka J, Krajinski F.

BMC Plant Biol. 2015 Sep 30;15:234. doi: 10.1186/s12870-015-0601-7.


High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner.

Glaubitz U, Erban A, Kopka J, Hincha DK, Zuther E.

J Exp Bot. 2015 Oct;66(20):6385-97. doi: 10.1093/jxb/erv352. Epub 2015 Jul 23.


Cytoskeletal Components Define Protein Location to Membrane Microdomains.

Szymanski WG, Zauber H, Erban A, Gorka M, Wu XN, Schulze WX.

Mol Cell Proteomics. 2015 Sep;14(9):2493-509. doi: 10.1074/mcp.M114.046904. Epub 2015 Jun 19.


Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.

Li X, Lawas LM, Malo R, Glaubitz U, Erban A, Mauleon R, Heuer S, Zuther E, Kopka J, Hincha DK, Jagadish KS.

Plant Cell Environ. 2015 Oct;38(10):2171-92. doi: 10.1111/pce.12545. Epub 2015 May 19.


Metabolic contribution to salt stress in two maize hybrids with contrasting resistance.

Richter JA, Erban A, Kopka J, Zörb C.

Plant Sci. 2015 Apr;233:107-115. doi: 10.1016/j.plantsci.2015.01.006. Epub 2015 Jan 15.


Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea.

Agudelo-Romero P, Erban A, Rego C, Carbonell-Bejerano P, Nascimento T, Sousa L, Martínez-Zapater JM, Kopka J, Fortes AM.

J Exp Bot. 2015 Apr;66(7):1769-85. doi: 10.1093/jxb/eru517. Epub 2015 Feb 11.


Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling.

Kohl S, Hollmann J, Erban A, Kopka J, Riewe D, Weschke W, Weber H.

J Exp Bot. 2015 Mar;66(5):1397-411. doi: 10.1093/jxb/eru492. Epub 2015 Jan 22.


Consequences of induced brassinosteroid deficiency in Arabidopsis leaves.

Schröder F, Lisso J, Obata T, Erban A, Maximova E, Giavalisco P, Kopka J, Fernie AR, Willmitzer L, Müssig C.

BMC Plant Biol. 2014 Nov 18;14:309. doi: 10.1186/s12870-014-0309-0.


Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins.

Gao J, van Kleeff PJ, Oecking C, Li KW, Erban A, Kopka J, Hincha DK, de Boer AH.

Plant J. 2014 Dec;80(5):785-96. doi: 10.1111/tpj.12677. Epub 2014 Nov 4.


Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis.

Hooks MA, Allwood JW, Harrison JK, Kopka J, Erban A, Goodacre R, Balk J.

Biochem J. 2014 Oct 15;463(2):309-17. doi: 10.1042/BJ20140430.


Rationales and approaches for studying metabolism in eukaryotic microalgae.

Veyel D, Erban A, Fehrle I, Kopka J, Schroda M.

Metabolites. 2014 Apr 11;4(2):184-217. doi: 10.3390/metabo4020184.


Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii.

Mettler T, Mühlhaus T, Hemme D, Schöttler MA, Rupprecht J, Idoine A, Veyel D, Pal SK, Yaneva-Roder L, Winck FV, Sommer F, Vosloh D, Seiwert B, Erban A, Burgos A, Arvidsson S, Schönfelder S, Arnold A, Günther M, Krause U, Lohse M, Kopka J, Nikoloski Z, Mueller-Roeber B, Willmitzer L, Bock R, Schroda M, Stitt M.

Plant Cell. 2014 Jun;26(6):2310-2350. Epub 2014 Jun 3.


Profiling methods to identify cold-regulated primary metabolites using gas chromatography coupled to mass spectrometry.

Dethloff F, Erban A, Orf I, Alpers J, Fehrle I, Beine-Golovchuk O, Schmidt S, Schwachtje J, Kopka J.

Methods Mol Biol. 2014;1166:171-97. doi: 10.1007/978-1-4939-0844-8_14.


Arabidopsis thaliana glyoxalase 2-1 is required during abiotic stress but is not essential under normal plant growth.

Devanathan S, Erban A, Perez-Torres R Jr, Kopka J, Makaroff CA.

PLoS One. 2014 Apr 23;9(4):e95971. doi: 10.1371/journal.pone.0095971. eCollection 2014.


Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis.

Watanabe M, Balazadeh S, Tohge T, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Plant Physiol. 2013 Jul;162(3):1290-310. doi: 10.1104/pp.113.217380. Epub 2013 May 21.


Dissecting rice polyamine metabolism under controlled long-term drought stress.

Do PT, Degenkolbe T, Erban A, Heyer AG, Kopka J, Köhl KI, Hincha DK, Zuther E.

PLoS One. 2013;8(4):e60325. doi: 10.1371/journal.pone.0060325. Epub 2013 Apr 8.


Search for transcriptional and metabolic markers of grape pre-ripening and ripening and insights into specific aroma development in three Portuguese cultivars.

Agudelo-Romero P, Erban A, Sousa L, Pais MS, Kopka J, Fortes AM.

PLoS One. 2013;8(4):e60422. doi: 10.1371/journal.pone.0060422. Epub 2013 Apr 2.


Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry).

Rohloff J, Kopka J, Erban A, Winge P, Wilson RC, Bones AM, Davik J, Randall SK, Alsheikh MK.

Phytochemistry. 2012 May;77:99-109. doi: 10.1016/j.phytochem.2012.01.024. Epub 2012 Feb 25.


TagFinder: preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry based metabolome analyses.

Luedemann A, von Malotky L, Erban A, Kopka J.

Methods Mol Biol. 2012;860:255-86. doi: 10.1007/978-1-61779-594-7_16.


Plant metabolomics and its potential for systems biology research background concepts, technology, and methodology.

Allwood JW, De Vos RC, Moing A, Deborde C, Erban A, Kopka J, Goodacre R, Hall RD.

Methods Enzymol. 2011;500:299-336. doi: 10.1016/B978-0-12-385118-5.00016-5. Review.


Functional associations between the metabolome and manganese tolerance in Vigna unguiculata.

Führs H, Specht A, Erban A, Kopka J, Horst WJ.

J Exp Bot. 2012 Jan;63(1):329-40. doi: 10.1093/jxb/err276. Epub 2011 Sep 20.


Comparative metabolomics of drought acclimation in model and forage legumes.

Sanchez DH, Schwabe F, Erban A, Udvardi MK, Kopka J.

Plant Cell Environ. 2012 Jan;35(1):136-49. doi: 10.1111/j.1365-3040.2011.02423.x. Epub 2011 Oct 12.


Metabolomic linkage reveals functional interaction between glucose-dependent insulinotropic polypeptide and ghrelin in humans.

Rudovich NN, Nikiforova VJ, Otto B, Pivovarova O, Gögebakan O, Erban A, Möhlig M, Weickert MO, Spranger J, Tschöp MH, Willmitzer L, Nauck M, Pfeiffer AF.

Am J Physiol Endocrinol Metab. 2011 Oct;301(4):E608-17. doi: 10.1152/ajpendo.00154.2011. Epub 2011 May 17.


Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics.

Sanchez DH, Pieckenstain FL, Szymanski J, Erban A, Bromke M, Hannah MA, Kraemer U, Kopka J, Udvardi MK.

PLoS One. 2011 Feb 14;6(2):e17094. doi: 10.1371/journal.pone.0017094.


Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

Moing A, Aharoni A, Biais B, Rogachev I, Meir S, Brodsky L, Allwood JW, Erban A, Dunn WB, Kay L, de Koning S, de Vos RC, Jonker H, Mumm R, Deborde C, Maucourt M, Bernillon S, Gibon Y, Hansen TH, Husted S, Goodacre R, Kopka J, Schjoerring JK, Rolin D, Hall RD.

New Phytol. 2011 May;190(3):683-96. doi: 10.1111/j.1469-8137.2010.03626.x. Epub 2011 Jan 28.

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