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Items: 1 to 50 of 66

1.

Genomic features of colistin resistant Escherichia coli ST69 strain harboring mcr-1 on IncHI2 plasmid from raw milk cheese in Egypt.

Hammad AM, Hoffmann M, Gonzalez-Escalona N, Abbas NH, Yao K, Koenig S, Allué-Guardia A, Eppinger M.

Infect Genet Evol. 2019 Apr 25;73:126-131. doi: 10.1016/j.meegid.2019.04.021. [Epub ahead of print]

PMID:
31029792
2.

Closed Genome Sequence of Escherichia coli K-12 Group Strain C600.

Allué-Guardia A, Nyong EC, Koenig SSK, Vargas SM, Bono JL, Eppinger M.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01052-18. doi: 10.1128/MRA.01052-18. eCollection 2019 Jan.

3.

Single Nucleotide Polymorphism Analysis Indicates Genetic Distinction and Reduced Diversity of Swine-Associated Methicillin Resistant Staphylococcus aureus (MRSA) ST5 Isolates Compared to Clinical MRSA ST5 Isolates.

Hau SJ, Allué-Guardia A, Rusconi B, Haan JS, Davies PR, Frana TS, Eppinger M, Nicholson TL.

Front Microbiol. 2018 Sep 11;9:2078. doi: 10.3389/fmicb.2018.02078. eCollection 2018.

4.

Closed Genome and Comparative Phylogenetic Analysis of the Clinical Multidrug Resistant Shigella sonnei Strain 866.

Allué-Guardia A, Koenig SSK, Quirós P, Muniesa M, Bono JL, Eppinger M.

Genome Biol Evol. 2018 Sep 1;10(9):2241-2247. doi: 10.1093/gbe/evy168.

5.

Acinetobacter baumannii Gastrointestinal Colonization Is Facilitated by Secretory IgA Which Is Reductively Dissociated by Bacterial Thioredoxin A.

Ketter PM, Yu JJ, Guentzel MN, May HC, Gupta R, Eppinger M, Klose KE, Seshu J, Chambers JP, Cap AP, Arulanandam BP.

MBio. 2018 Jul 10;9(4). pii: e01298-18. doi: 10.1128/mBio.01298-18.

6.

Closed Genome Sequence of Vibrio cholerae O1 El Tor Inaba Strain A1552.

Allué-Guardia A, Echazarreta M, Koenig SSK, Klose KE, Eppinger M.

Genome Announc. 2018 Mar 1;6(9). pii: e00098-18. doi: 10.1128/genomeA.00098-18.

7.

Identification of a mouse Lactobacillus johnsonii strain with deconjugase activity against the FXR antagonist T-β-MCA.

DiMarzio M, Rusconi B, Yennawar NH, Eppinger M, Patterson AD, Dudley EG.

PLoS One. 2017 Sep 14;12(9):e0183564. doi: 10.1371/journal.pone.0183564. eCollection 2017.

8.

Imaging of congenital torticollis in infants: a retrospective study of an institutional protocol.

Boyko N, Eppinger MA, Straka-DeMarco D, Mazzola CA.

J Neurosurg Pediatr. 2017 Aug;20(2):191-195. doi: 10.3171/2017.3.PEDS16277. Epub 2017 Jun 2. Review.

PMID:
28574316
9.

Flooding adds pathogenic Escherichia coli strains to the water sources in southern Khyber Pakhtunkhwa, Pakistan.

Shah MS, Eppinger M, Ahmed S, Shah AA, Hameed A, Hasan F.

Indian J Med Microbiol. 2016 Oct-Dec;34(4):483-488. doi: 10.4103/0255-0857.195350.

10.

Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.

Rusconi B, Sanjar F, Koenig SS, Mammel MK, Tarr PI, Eppinger M.

Front Microbiol. 2016 Jun 30;7:985. doi: 10.3389/fmicb.2016.00985. eCollection 2016.

11.

Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008.

Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura FT, Eppinger M, Ravel J, Huq A, Cravioto A, Colwell RR.

MBio. 2016 Mar 15;7(2):e02160. doi: 10.1128/mBio.02160-15.

12.

Genome Sequences of Five Clinical Isolates of Klebsiella pneumoniae.

Lopez LL, Rusconi B, Gildersleeve H, Qi C, McLaughlin M, Scheetz MH, Seshu J, Eppinger M.

Genome Announc. 2016 Mar 10;4(2). pii: e00040-16. doi: 10.1128/genomeA.00040-16.

13.

Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages.

Yin S, Rusconi B, Sanjar F, Goswami K, Xiaoli L, Eppinger M, Dudley EG.

BMC Genomics. 2015 Sep 29;16:733. doi: 10.1186/s12864-015-1934-1.

14.

Recent Advances in Understanding and Managing Autism Spectrum Disorders.

Germain B, Eppinger MA, Mostofsky SH, DiCicco-Bloom E, Maria BL.

J Child Neurol. 2015 Dec;30(14):1887-920. doi: 10.1177/0883073815601499. Epub 2015 Sep 2.

15.

Selective dorsal rhizotomy for spastic diplegia secondary to stroke in an adult patient.

Eppinger MA, Berman CM, Mazzola CA.

Surg Neurol Int. 2015 Jun 25;6:111. doi: 10.4103/2152-7806.159382. eCollection 2015.

16.

EHEC Genomics: Past, Present, and Future.

Sadiq SM, Hazen TH, Rasko DA, Eppinger M.

Microbiol Spectr. 2014 Aug;2(4):EHEC-0020-2013. doi: 10.1128/microbiolspec.EHEC-0020-2013. Review.

PMID:
26104203
17.

Genome Sequence of Bacillus thuringiensis Strain Btm27, an Egyptian Isolate Highly Toxic to Cotton Leafworm.

Rusconi B, Chen Y, Koenig SS, El-Helow ER, Eppinger M.

Genome Announc. 2015 May 14;3(3). pii: e00446-15. doi: 10.1128/genomeA.00446-15.

18.

Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes.

Sanjar F, Rusconi B, Hazen TH, Koenig SS, Mammel MK, Feng PC, Rasko DA, Eppinger M.

Pathog Dis. 2015 Jul;73(5). pii: ftv033. doi: 10.1093/femspd/ftv033. Epub 2015 May 10.

19.

Public Health Investigation of Two Outbreaks of Shiga Toxin-Producing Escherichia coli O157 Associated with Consumption of Watercress.

Jenkins C, Dallman TJ, Launders N, Willis C, Byrne L, Jorgensen F, Eppinger M, Adak GK, Aird H, Elviss N, Grant KA, Morgan D, McLauchlin J.

Appl Environ Microbiol. 2015 Jun 15;81(12):3946-52. doi: 10.1128/AEM.04188-14. Epub 2015 Apr 3.

20.
21.

Understanding the reasons for delayed referral for intrathecal baclofen therapy in pediatric patients with severe spasticity.

Berman CM, Eppinger MA, Mazzola CA.

Childs Nerv Syst. 2015 Mar;31(3):405-13. doi: 10.1007/s00381-014-2591-4. Epub 2014 Nov 16.

PMID:
25398671
22.

Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.

Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, Ravel J, Keim PS.

MBio. 2014 Nov 4;5(6):e01721. doi: 10.1128/mBio.01721-14.

23.

Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems.

Franz E, Delaquis P, Morabito S, Beutin L, Gobius K, Rasko DA, Bono J, French N, Osek J, Lindstedt BA, Muniesa M, Manning S, LeJeune J, Callaway T, Beatson S, Eppinger M, Dallman T, Forbes KJ, Aarts H, Pearl DL, Gannon VP, Laing CR, Strachan NJ.

Int J Food Microbiol. 2014 Sep 18;187:57-72. doi: 10.1016/j.ijfoodmicro.2014.07.002. Epub 2014 Jul 11. Review. Erratum in: Int J Food Microbiol. 2015 Jan 16;193:159.

PMID:
25051454
24.

Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes.

Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, Abazashvili N, Kekelidze M, Tsanava S, Imnadze P, Ganz HH, Getz WM, Pearson O, Gajer P, Eppinger M, Ravel J, Wagner DM, Okinaka RT, Schupp JM, Keim P, Pearson T.

PLoS One. 2014 Jul 21;9(7):e102651. doi: 10.1371/journal.pone.0102651. eCollection 2014.

25.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

26.

Genome Sequences of Four Acinetobacter baumannii-A. calcoaceticus Complex Isolates from Combat-Related Infections Sustained in the Middle East.

Ketter P, Guentzel MN, Chambers JP, Jorgensen J, Murray CK, Cap AP, Yu JJ, Eppinger M, Arulanandam BP.

Genome Announc. 2014 Feb 6;2(1). pii: e00026-14. doi: 10.1128/genomeA.00026-14.

27.

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.

Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M.

Genome Announc. 2014 Jan 9;2(1). pii: e01120-13. doi: 10.1128/genomeA.01120-13.

28.

Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis.

Eppinger M, McNair K, Zogaj X, Dinsdale EA, Edwards RA, Klose KE.

Genome Announc. 2013 Nov 7;1(6). pii: e00926-13. doi: 10.1128/genomeA.00926-13.

29.

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.

Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Fraser CM, Ravel J.

Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12.

30.

Genomic diversity of 2010 Haitian cholera outbreak strains.

Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, Haley BJ, Taviani E, Hine E, Su Q, Tallon LJ, Prosper JB, Furth K, Hoq MM, Li H, Fraser-Liggett CM, Cravioto A, Huq A, Ravel J, Cebula TA, Colwell RR.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):E2010-7. doi: 10.1073/pnas.1207359109. Epub 2012 Jun 18.

31.

Whole-genome sequences of Bacillus subtilis and close relatives.

Earl AM, Eppinger M, Fricke WF, Rosovitz MJ, Rasko DA, Daugherty S, Losick R, Kolter R, Ravel J.

J Bacteriol. 2012 May;194(9):2378-9. doi: 10.1128/JB.05675-11.

32.

Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance.

Eppinger M, Radnedge L, Andersen G, Vietri N, Severson G, Mou S, Ravel J, Worsham PL.

PLoS One. 2012;7(3):e32911. doi: 10.1371/journal.pone.0032911. Epub 2012 Mar 30.

33.

Genomic anatomy of Escherichia coli O157:H7 outbreaks.

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20142-7. doi: 10.1073/pnas.1107176108. Epub 2011 Nov 30.

34.

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar.

Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoamanana BW, Beckstrom-Sternberg SM, Achtman M, Chanteau S, Keim P.

PLoS Negl Trop Dis. 2011 Sep;5(9):e1319. doi: 10.1371/journal.pntd.0001319. Epub 2011 Sep 13.

35.

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS.

J Bacteriol. 2011 Aug;193(16):4199-213. doi: 10.1128/JB.00449-11. Epub 2011 Jun 24.

36.

Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir.

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA.

Appl Environ Microbiol. 2011 May;77(9):2916-25. doi: 10.1128/AEM.02554-10. Epub 2011 Mar 18.

37.

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.

Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, Rahalison L, Petersen JM, Balloux F, Keim P, Wirth T, Ravel J, Yang R, Carniel E, Achtman M.

Nat Genet. 2010 Dec;42(12):1140-3. doi: 10.1038/ng.705. Epub 2010 Oct 31.

38.

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.

Eppinger M, Worsham PL, Nikolich MP, Riley DR, Sebastian Y, Mou S, Achtman M, Lindler LE, Ravel J.

J Bacteriol. 2010 Mar;192(6):1685-99. doi: 10.1128/JB.01518-09. Epub 2010 Jan 8.

39.

Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China.

Eppinger M, Guo Z, Sebastian Y, Song Y, Lindler LE, Yang R, Ravel J.

J Bacteriol. 2009 Dec;191(24):7628-9. doi: 10.1128/JB.01227-09. Epub 2009 Oct 9.

40.

Evidence that human Chlamydia pneumoniae was zoonotically acquired.

Myers GS, Mathews SA, Eppinger M, Mitchell C, O'Brien KK, White OR, Benahmed F, Brunham RC, Read TD, Ravel J, Bavoil PM, Timms P.

J Bacteriol. 2009 Dec;191(23):7225-33. doi: 10.1128/JB.00746-09. Epub 2009 Sep 11.

41.

Diagnostic performance of the ARCHITECT C-Peptide immunoassay.

Schultess J, van Duren C, Martens M, Costa M, Llop T, Martí T, Eppinger M, Hausmann M, Krack W, Dhein J.

Clin Chem Lab Med. 2009;47(7):834-41. doi: 10.1515/CCLM.2009.185.

PMID:
19496736
42.

Divergence without difference: phylogenetics and taxonomy of Chlamydia resolved.

Stephens RS, Myers G, Eppinger M, Bavoil PM.

FEMS Immunol Med Microbiol. 2009 Mar;55(2):115-9. doi: 10.1111/j.1574-695X.2008.00516.x. Review.

43.

Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931.

Dunthorn M, Eppinger M, Schwarz MV, Schweikert M, Boenigk J, Katz LA, Stoeck T.

Int J Syst Evol Microbiol. 2009 Jan;59(Pt 1):167-80. doi: 10.1099/ijs.0.000935-0.

PMID:
19126743
44.

[Application of the current resuscitation guidelines 2005. Case report of successful cardiopulmonary resuscitation].

Eppinger M, Flury G, Wenzel V, Koppenberg J.

Anaesthesist. 2007 Nov;56(11):1133-6. German.

PMID:
17898968
45.

The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever.

Eppinger M, Rosovitz MJ, Fricke WF, Rasko DA, Kokorina G, Fayolle C, Lindler LE, Carniel E, Ravel J.

PLoS Genet. 2007 Aug;3(8):e142. Epub 2007 Jul 10.

46.

Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America.

Auerbach RK, Tuanyok A, Probert WS, Kenefic L, Vogler AJ, Bruce DC, Munk C, Brettin TS, Eppinger M, Ravel J, Wagner DM, Keim P.

PLoS One. 2007 Aug 22;2(8):e770.

47.

Multiple antimicrobial resistance in plague: an emerging public health risk.

Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, Rasko DA, Mammel MK, Eppinger M, Rosovitz MJ, Wagner D, Rahalison L, Leclerc JE, Hinshaw JM, Lindler LE, Cebula TA, Carniel E, Ravel J.

PLoS One. 2007 Mar 21;2(3):e309.

48.

Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines.

Eppinger M, Baar C, Linz B, Raddatz G, Lanz C, Keller H, Morelli G, Gressmann H, Achtman M, Schuster SC.

PLoS Genet. 2006 Jul;2(7):e120. Epub 2006 Jun 15.

49.

Comparative analysis of four Campylobacterales.

Eppinger M, Baar C, Raddatz G, Huson DH, Schuster SC.

Nat Rev Microbiol. 2004 Nov;2(11):872-85. Review.

PMID:
15494744
50.

A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective.

Rendulic S, Jagtap P, Rosinus A, Eppinger M, Baar C, Lanz C, Keller H, Lambert C, Evans KJ, Goesmann A, Meyer F, Sockett RE, Schuster SC.

Science. 2004 Jan 30;303(5658):689-92.

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