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Items: 1 to 50 of 125

1.

Disease Ontology: improving and unifying disease annotations across species.

Bello SM, Shimoyama M, Mitraka E, Laulederkind SJF, Smith CL, Eppig JT, Schriml LM.

Dis Model Mech. 2018 Mar 12;11(3). pii: dmm032839. doi: 10.1242/dmm.032839.

2.
3.

Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research.

Eppig JT, Smith CL, Blake JA, Ringwald M, Kadin JA, Richardson JE, Bult CJ.

Methods Mol Biol. 2017;1488:47-73.

PMID:
27933520
4.

The mouse Gene Expression Database (GXD): 2017 update.

Finger JH, Smith CM, Hayamizu TF, McCright IJ, Xu J, Law M, Shaw DR, Baldarelli RM, Beal JS, Blodgett O, Campbell JW, Corbani LE, Lewis JR, Forthofer KL, Frost PJ, Giannatto SC, Hutchins LN, Miers DB, Motenko H, Stone KR, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Nucleic Acids Res. 2017 Jan 4;45(D1):D730-D736. doi: 10.1093/nar/gkw1073. Epub 2016 Nov 28.

5.

Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse.

Blake JA, Eppig JT, Kadin JA, Richardson JE, Smith CL, Bult CJ; the Mouse Genome Database Group.

Nucleic Acids Res. 2017 Jan 4;45(D1):D723-D729. doi: 10.1093/nar/gkw1040. Epub 2016 Nov 28.

6.

Mouse genome database 2016.

Bult CJ, Eppig JT, Blake JA, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2016 Jan 4;44(D1):D840-7. doi: 10.1093/nar/gkv1211. Epub 2015 Nov 17.

7.

miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Desvignes T, Batzel P, Berezikov E, Eilbeck K, Eppig JT, McAndrews MS, Singer A, Postlethwait JH.

Trends Genet. 2015 Nov;31(11):613-626. doi: 10.1016/j.tig.2015.09.002. Epub 2015 Oct 8. Review.

8.

The International Mouse Strain Resource (IMSR): cataloging worldwide mouse and ES cell line resources.

Eppig JT, Motenko H, Richardson JE, Richards-Smith B, Smith CL.

Mamm Genome. 2015 Oct;26(9-10):448-55. doi: 10.1007/s00335-015-9600-0. Epub 2015 Sep 15.

9.

Finding mouse models of human lymphomas and leukemia's using the Jackson laboratory mouse tumor biology database.

Begley DA, Sundberg JP, Krupke DM, Neuhauser SB, Bult CJ, Eppig JT, Morse HC 3rd, Ward JM.

Exp Mol Pathol. 2015 Dec;99(3):533-6. doi: 10.1016/j.yexmp.2015.07.004. Epub 2015 Aug 21.

10.

Mouse Genome Informatics (MGI): reflecting on 25 years.

Eppig JT, Richardson JE, Kadin JA, Ringwald M, Blake JA, Bult CJ.

Mamm Genome. 2015 Aug;26(7-8):272-84. doi: 10.1007/s00335-015-9589-4. Epub 2015 Aug 4. Review.

11.

Orthology for comparative genomics in the mouse genome database.

Dolan ME, Baldarelli RM, Bello SM, Ni L, McAndrews MS, Bult CJ, Kadin JA, Richardson JE, Ringwald M, Eppig JT, Blake JA.

Mamm Genome. 2015 Aug;26(7-8):305-13. doi: 10.1007/s00335-015-9588-5. Epub 2015 Jul 30. Review.

12.

Allele, phenotype and disease data at Mouse Genome Informatics: improving access and analysis.

Bello SM, Smith CL, Eppig JT.

Mamm Genome. 2015 Aug;26(7-8):285-94. doi: 10.1007/s00335-015-9582-y. Epub 2015 Jul 11.

13.

Mouse Genome Database: From sequence to phenotypes and disease models.

Eppig JT, Richardson JE, Kadin JA, Smith CL, Blake JA, Bult CJ; MGD Team.

Genesis. 2015 Aug;53(8):458-73. doi: 10.1002/dvg.22874. Epub 2015 Jul 27. Review.

14.

The mouse gene expression database: New features and how to use them effectively.

Finger JH, Smith CM, Hayamizu TF, McCright IJ, Xu J, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Genesis. 2015 Aug;53(8):510-22. doi: 10.1002/dvg.22864. Epub 2015 Jun 18.

15.

GXD: a community resource of mouse Gene Expression Data.

Smith CM, Finger JH, Hayamizu TF, McCright IJ, Xu J, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Mamm Genome. 2015 Aug;26(7-8):314-24. doi: 10.1007/s00335-015-9563-1. Epub 2015 May 5.

16.
17.

Global genetic analysis in mice unveils central role for cilia in congenital heart disease.

Li Y, Klena NT, Gabriel GC, Liu X, Kim AJ, Lemke K, Chen Y, Chatterjee B, Devine W, Damerla RR, Chang C, Yagi H, San Agustin JT, Thahir M, Anderton S, Lawhead C, Vescovi A, Pratt H, Morgan J, Haynes L, Smith CL, Eppig JT, Reinholdt L, Francis R, Leatherbury L, Ganapathiraju MK, Tobita K, Pazour GJ, Lo CW.

Nature. 2015 May 28;521(7553):520-4. doi: 10.1038/nature14269. Epub 2015 Mar 25.

18.

The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2015 Jan;43(Database issue):D726-36. doi: 10.1093/nar/gku967. Epub 2014 Oct 27.

19.

Mouse Tumor Biology (MTB): a database of mouse models for human cancer.

Bult CJ, Krupke DM, Begley DA, Richardson JE, Neuhauser SB, Sundberg JP, Eppig JT.

Nucleic Acids Res. 2015 Jan;43(Database issue):D818-24. doi: 10.1093/nar/gku987. Epub 2014 Oct 20.

20.

Identifying mouse models for skin cancer using the Mouse Tumor Biology Database.

Begley DA, Krupke DM, Neuhauser SB, Richardson JE, Schofield PN, Bult CJ, Eppig JT, Sundberg JP.

Exp Dermatol. 2014 Oct;23(10):761-3. doi: 10.1111/exd.12512.

21.

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse.

Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2014 Jan;42(Database issue):D810-7. doi: 10.1093/nar/gkt1225. Epub 2013 Nov 26.

22.

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Köhler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GC, Brown DL, Brudno M, Campbell J, FitzPatrick DR, Eppig JT, Jackson AP, Freson K, Girdea M, Helbig I, Hurst JA, Jähn J, Jackson LG, Kelly AM, Ledbetter DH, Mansour S, Martin CL, Moss C, Mumford A, Ouwehand WH, Park SM, Riggs ER, Scott RH, Sisodiya S, Van Vooren S, Wapner RJ, Wilkie AO, Wright CF, Vulto-van Silfhout AT, de Leeuw N, de Vries BB, Washingthon NL, Smith CL, Westerfield M, Schofield P, Ruef BJ, Gkoutos GV, Haendel M, Smedley D, Lewis SE, Robinson PN.

Nucleic Acids Res. 2014 Jan;42(Database issue):D966-74. doi: 10.1093/nar/gkt1026. Epub 2013 Nov 11.

23.

The mouse Gene Expression Database (GXD): 2014 update.

Smith CM, Finger JH, Hayamizu TF, McCright IJ, Xu J, Berghout J, Campbell J, Corbani LE, Forthofer KL, Frost PJ, Miers D, Shaw DR, Stone KR, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Nucleic Acids Res. 2014 Jan;42(Database issue):D818-24. doi: 10.1093/nar/gkt954. Epub 2013 Oct 25.

24.

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species.

Park CA, Bello SM, Smith CL, Hu ZL, Munzenmaier DH, Nigam R, Smith JR, Shimoyama M, Eppig JT, Reecy JM.

J Biomed Semantics. 2013 Aug 9;4(1):13. doi: 10.1186/2041-1480-4-13.

25.

The mouse genome database: genotypes, phenotypes, and models of human disease.

Bult CJ, Eppig JT, Blake JA, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2013 Jan;41(Database issue):D885-91. doi: 10.1093/nar/gks1115. Epub 2012 Nov 21.

26.

Supporting conditional mouse mutagenesis with a comprehensive cre characterization resource.

Heffner CS, Herbert Pratt C, Babiuk RP, Sharma Y, Rockwood SF, Donahue LR, Eppig JT, Murray SA.

Nat Commun. 2012;3:1218. doi: 10.1038/ncomms2186.

27.

Mouse genomics programs and resources.

Bucan M, Eppig JT, Brown S.

Mamm Genome. 2012 Oct;23(9-10):479-89. doi: 10.1007/s00335-012-9429-8. No abstract available.

PMID:
22968825
28.

The mammalian gene function resource: the International Knockout Mouse Consortium.

Bradley A, Anastassiadis K, Ayadi A, Battey JF, Bell C, Birling MC, Bottomley J, Brown SD, Bürger A, Bult CJ, Bushell W, Collins FS, Desaintes C, Doe B, Economides A, Eppig JT, Finnell RH, Fletcher C, Fray M, Frendewey D, Friedel RH, Grosveld FG, Hansen J, Hérault Y, Hicks G, Hörlein A, Houghton R, Hrabé de Angelis M, Huylebroeck D, Iyer V, de Jong PJ, Kadin JA, Kaloff C, Kennedy K, Koutsourakis M, Lloyd KC, Marschall S, Mason J, McKerlie C, McLeod MP, von Melchner H, Moore M, Mujica AO, Nagy A, Nefedov M, Nutter LM, Pavlovic G, Peterson JL, Pollock J, Ramirez-Solis R, Rancourt DE, Raspa M, Remacle JE, Ringwald M, Rosen B, Rosenthal N, Rossant J, Ruiz Noppinger P, Ryder E, Schick JZ, Schnütgen F, Schofield P, Seisenberger C, Selloum M, Simpson EM, Skarnes WC, Smedley D, Stanford WL, Stewart AF, Stone K, Swan K, Tadepally H, Teboul L, Tocchini-Valentini GP, Valenzuela D, West AP, Yamamura K, Yoshinaga Y, Wurst W.

Mamm Genome. 2012 Oct;23(9-10):580-6. doi: 10.1007/s00335-012-9422-2. Epub 2012 Sep 12.

29.

The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data.

Smith CL, Eppig JT.

Mamm Genome. 2012 Oct;23(9-10):653-68. doi: 10.1007/s00335-012-9421-3. Epub 2012 Sep 9.

30.

Beyond knockouts: cre resources for conditional mutagenesis.

Murray SA, Eppig JT, Smedley D, Simpson EM, Rosenthal N.

Mamm Genome. 2012 Oct;23(9-10):587-99. doi: 10.1007/s00335-012-9430-2. Epub 2012 Aug 29. Erratum in: Mamm Genome. 2012 Dec;23(11-12):791.

31.

Disease model curation improvements at Mouse Genome Informatics.

Bello SM, Richardson JE, Davis AP, Wiegers TC, Mattingly CJ, Dolan ME, Smith CL, Blake JA, Eppig JT.

Database (Oxford). 2012 Mar 20;2012:bar063. doi: 10.1093/database/bar063. Print 2012.

32.

The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2012 Jan;40(Database issue):D881-6. doi: 10.1093/nar/gkr974. Epub 2011 Nov 10.

33.

The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data.

Begley DA, Krupke DM, Neuhauser SB, Richardson JE, Bult CJ, Eppig JT, Sundberg JP.

Vet Pathol. 2012 Jan;49(1):218-23. doi: 10.1177/0300985810395726. Epub 2011 Jan 31.

34.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Database (Oxford). 2011 Jan 4;2011:baq027. doi: 10.1093/database/baq027. Print 2011.

35.

Mouse mutants and phenotypes: accessing information for the study of mammalian gene function.

Ringwald M, Eppig JT.

Methods. 2011 Apr;53(4):405-10. doi: 10.1016/j.ymeth.2010.12.024. Epub 2010 Dec 23.

36.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Nucleic Acids Res. 2011 Jan;39(Database issue):D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18.

37.

The mouse Gene Expression Database (GXD): 2011 update.

Finger JH, Smith CM, Hayamizu TF, McCright IJ, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Nucleic Acids Res. 2011 Jan;39(Database issue):D835-41. doi: 10.1093/nar/gkq1132. Epub 2010 Nov 9.

38.

The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics.

Blake JA, Bult CJ, Kadin JA, Richardson JE, Eppig JT; Mouse Genome Database Group.

Nucleic Acids Res. 2011 Jan;39(Database issue):D842-8. doi: 10.1093/nar/gkq1008. Epub 2010 Nov 3.

39.

The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium.

Ringwald M, Iyer V, Mason JC, Stone KR, Tadepally HD, Kadin JA, Bult CJ, Eppig JT, Oakley DJ, Briois S, Stupka E, Maselli V, Smedley D, Liu S, Hansen J, Baldock R, Hicks GG, Skarnes WC.

Nucleic Acids Res. 2011 Jan;39(Database issue):D849-55. doi: 10.1093/nar/gkq879. Epub 2010 Oct 6.

40.

The mammalian phenotype ontology: enabling robust annotation and comparative analysis.

Smith CL, Eppig JT.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):390-399. doi: 10.1002/wsbm.44. Review.

41.

The Mouse Genome Database: enhancements and updates.

Bult CJ, Kadin JA, Richardson JE, Blake JA, Eppig JT; Mouse Genome Database Group.

Nucleic Acids Res. 2010 Jan;38(Database issue):D586-92. doi: 10.1093/nar/gkp880. Epub 2009 Oct 27.

42.

The Mouse Genome Database genotypes::phenotypes.

Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2009 Jan;37(Database issue):D712-9. doi: 10.1093/nar/gkn886. Epub 2008 Nov 3.

43.

The Mouse Tumor Biology database.

Krupke DM, Begley DA, Sundberg JP, Bult CJ, Eppig JT.

Nat Rev Cancer. 2008 Jun;8(6):459-65. doi: 10.1038/nrc2390. Epub 2008 Apr 24. Review.

44.

The Mouse Genome Database (MGD): mouse biology and model systems.

Bult CJ, Eppig JT, Kadin JA, Richardson JE, Blake JA; Mouse Genome Database Group.

Nucleic Acids Res. 2008 Jan;36(Database issue):D724-8. Epub 2007 Dec 23.

45.

Mouse genome informatics (MGI) resources for pathology and toxicology.

Eppig JT, Blake JA, Bult CJ, Richardson JE, Kadin JA, Ringwald M; MGI staff.

Toxicol Pathol. 2007 Apr;35(3):456-7. No abstract available.

PMID:
17474068
46.

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources.

Mouse Phenotype Database Integration Consortium, Hancock JM, Adams NC, Aidinis V, Blake A, Bogue M, Brown SD, Chesler EJ, Davidson D, Duran C, Eppig JT, Gailus-Durner V, Gates H, Gkoutos GV, Greenaway S, Hrabé de Angelis M, Kollias G, Leblanc S, Lee K, Lengger C, Maier H, Mallon AM, Masuya H, Melvin DG, Müller W, Parkinson H, Proctor G, Reuveni E, Schofield P, Shukla A, Smith C, Toyoda T, Vasseur L, Wakana S, Walling A, White J, Wood J, Zouberakis M.

Mamm Genome. 2007 Mar;18(3):157-63. Epub 2007 Apr 10. Erratum in: Mamm Genome. 2007 Nov;18(11):815. Mamm Genome. 2008 Mar;19(3):219-20. multiple author names added.

47.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

48.

Mouse Tumor Biology Database (MTB): status update and future directions.

Begley DA, Krupke DM, Vincent MJ, Sundberg JP, Bult CJ, Eppig JT.

Nucleic Acids Res. 2007 Jan;35(Database issue):D638-42. Epub 2006 Nov 29.

49.

The mouse Gene Expression Database (GXD): 2007 update.

Smith CM, Finger JH, Hayamizu TF, McCright IJ, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D618-23. Epub 2006 Nov 27.

50.

The Mouse Genome Database (MGD): updates and enhancements.

Blake JA, Eppig JT, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D562-7.

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