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Items: 13

1.

Computational analysis of the evolutionarily conserved Missing In Metastasis/Metastasis Suppressor 1 gene predicts novel interactions, regulatory regions and transcriptional control.

Petrov P, Sarapulov AV, Eöry L, Scielzo C, Scarfò L, Smith J, Burt DW, Mattila PK.

Sci Rep. 2019 Mar 11;9(1):4155. doi: 10.1038/s41598-019-40697-1.

2.

Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human.

Kuo RI, Tseng E, Eory L, Paton IR, Archibald AL, Burt DW.

BMC Genomics. 2017 Apr 24;18(1):323. doi: 10.1186/s12864-017-3691-9.

3.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.

4.

Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes.

Boschiero C, Gheyas AA, Ralph HK, Eory L, Paton B, Kuo R, Fulton J, Preisinger R, Kaiser P, Burt DW.

BMC Genomics. 2015 Jul 31;16:562. doi: 10.1186/s12864-015-1711-1.

5.

Sunitinib Treatment Exacerbates Intratumoral Heterogeneity in Metastatic Renal Cancer.

Stewart GD, O'Mahony FC, Laird A, Eory L, Lubbock AL, Mackay A, Nanda J, O'Donnell M, Mullen P, McNeill SA, Riddick AC, Berney D, Bex A, Aitchison M, Overton IM, Harrison DJ, Powles T.

Clin Cancer Res. 2015 Sep 15;21(18):4212-23. doi: 10.1158/1078-0432.CCR-15-0207. Epub 2015 May 26.

6.

Functional classification of 15 million SNPs detected from diverse chicken populations.

Gheyas AA, Boschiero C, Eory L, Ralph H, Kuo R, Woolliams JA, Burt DW.

DNA Res. 2015 Jun;22(3):205-17. doi: 10.1093/dnares/dsv005. Epub 2015 Apr 29.

7.

Avianbase: a community resource for bird genomics.

Eöry L, Gilbert MT, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis E, Flicek P, Burt DW.

Genome Biol. 2015 Jan 29;16:21. doi: 10.1186/s13059-015-0588-2.

8.

Carbonic anhydrase 9 expression increases with vascular endothelial growth factor-targeted therapy and is predictive of outcome in metastatic clear cell renal cancer.

Stewart GD, O'Mahony FC, Laird A, Rashid S, Martin SA, Eory L, Lubbock AL, Nanda J, O'Donnell M, Mackay A, Mullen P, McNeill SA, Riddick AC, Aitchison M, Berney D, Bex A, Overton IM, Harrison DJ, Powles T.

Eur Urol. 2014 Nov;66(5):956-63. doi: 10.1016/j.eururo.2014.04.007. Epub 2014 May 10.

9.

Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents.

Halligan DL, Kousathanas A, Ness RW, Harr B, Eöry L, Keane TM, Adams DJ, Keightley PD.

PLoS Genet. 2013;9(12):e1003995. doi: 10.1371/journal.pgen.1003995. Epub 2013 Dec 5.

10.

The use of reverse phase protein arrays (RPPA) to explore protein expression variation within individual renal cell cancers.

O'Mahony FC, Nanda J, Laird A, Mullen P, Caldwell H, Overton IM, Eory L, O'Donnell M, Faratian D, Powles T, Harrison DJ, Stewart GD.

J Vis Exp. 2013 Jan 22;(71). pii: 50221. doi: 10.3791/50221.

11.

Inference of mutation parameters and selective constraint in mammalian coding sequences by approximate Bayesian computation.

Keightley PD, Eöry L, Halligan DL, Kirkpatrick M.

Genetics. 2011 Apr;187(4):1153-61. doi: 10.1534/genetics.110.124073. Epub 2011 Feb 1.

12.

Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes.

Eory L, Halligan DL, Keightley PD.

Mol Biol Evol. 2010 Jan;27(1):177-92. doi: 10.1093/molbev/msp219.

PMID:
19759235
13.

CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence.

Baker CS, Eöry LA, Yakhnin H, Mercante J, Romeo T, Babitzke P.

J Bacteriol. 2007 Aug;189(15):5472-81. Epub 2007 May 25.

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