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Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome.

Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang R, Brown JWS.

Plant Cell. 2018 Jul;30(7):1424-1444. doi: 10.1105/tpc.18.00177. Epub 2018 May 15.


SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions.

Trincado JL, Entizne JC, Hysenaj G, Singh B, Skalic M, Elliott DJ, Eyras E.

Genome Biol. 2018 Mar 23;19(1):40. doi: 10.1186/s13059-018-1417-1.


A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.

Zhang R, Calixto CPG, Marquez Y, Venhuizen P, Tzioutziou NA, Guo W, Spensley M, Entizne JC, Lewandowska D, Ten Have S, Frei Dit Frey N, Hirt H, James AB, Nimmo HG, Barta A, Kalyna M, Brown JWS.

Nucleic Acids Res. 2017 May 19;45(9):5061-5073. doi: 10.1093/nar/gkx267.

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