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The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations.

Tett A, Huang KD, Asnicar F, Fehlner-Peach H, Pasolli E, Karcher N, Armanini F, Manghi P, Bonham K, Zolfo M, De Filippis F, Magnabosco C, Bonneau R, Lusingu J, Amuasi J, Reinhard K, Rattei T, Boulund F, Engstrand L, Zink A, Collado MC, Littman DR, Eibach D, Ercolini D, Rota-Stabelli O, Huttenhower C, Maixner F, Segata N.

Cell Host Microbe. 2019 Sep 24. pii: S1931-3128(19)30427-5. doi: 10.1016/j.chom.2019.08.018. [Epub ahead of print]


No distinct microbiome signature of irritable bowel syndrome found in a Swedish random population.

Hugerth LW, Andreasson A, Talley NJ, Forsberg AM, Kjellström L, Schmidt PT, Agreus L, Engstrand L.

Gut. 2019 Oct 10. pii: gutjnl-2019-318717. doi: 10.1136/gutjnl-2019-318717. [Epub ahead of print]


Menopausal hormone therapy treatment options and ovarian cancer risk: A Swedish prospective population-based matched-cohort study.

Simin J, Tamimi RM, Callens S, Engstrand L, Brusselaers N.

Int J Cancer. 2019 Oct 4. doi: 10.1002/ijc.32706. [Epub ahead of print]


Duration of use of proton pump inhibitors and the risk of gastric and oesophageal cancer.

Brusselaers N, Lagergren J, Engstrand L.

Cancer Epidemiol. 2019 Oct;62:101585. doi: 10.1016/j.canep.2019.101585. Epub 2019 Aug 21.


Composition of the mucosa-associated microbiota along the entire gastrointestinal tract of human individuals.

Vuik F, Dicksved J, Lam SY, Fuhler GM, van der Laan L, van de Winkel A, Konstantinov SR, Spaander M, Peppelenbosch MP, Engstrand L, Kuipers EJ.

United European Gastroenterol J. 2019 Aug;7(7):897-907. doi: 10.1177/2050640619852255. Epub 2019 May 17.


Isolates from Colonic Spirochetosis in Humans Show High Genomic Divergence and Potential Pathogenic Features but Are Not Detected Using Standard Primers for the Human Microbiota.

Thorell K, Inganäs L, Backhans A, Agréus L, Öst Å, Walker MM, Talley NJ, Kjellström L, Andreasson A, Engstrand L.

J Bacteriol. 2019 Oct 4;201(21). pii: e00272-19. doi: 10.1128/JB.00272-19. Print 2019 Nov 1.


The Gut Microbiota in Collagenous Colitis Shares Characteristics With Inflammatory Bowel Disease-Associated Dysbiosis.

Carstens A, Dicksved J, Nelson R, Lindqvist M, Andreasson A, Bohr J, Tysk C, Talley NJ, Agréus L, Engstrand L, Halfvarson J.

Clin Transl Gastroenterol. 2019 Jul;10(7):e00065. doi: 10.14309/ctg.0000000000000065.


The vaginal microbiota, human papillomavirus and cervical dysplasia: a systematic review and network meta-analysis.

Norenhag J, Du J, Olovsson M, Verstraelen H, Engstrand L, Brusselaers N.

BJOG. 2019 Jun 25. doi: 10.1111/1471-0528.15854. [Epub ahead of print] Review.


Reply to: Helicobacter pylori eradication treatment and the risk of gastric adenocarcinoma in a western population.

Doorakkers E, Lagergren J, Engstrand L, Brusselaers N.

Gut. 2019 May 21. pii: gutjnl-2019-319000. doi: 10.1136/gutjnl-2019-319000. [Epub ahead of print] No abstract available.


Alterations in the relative abundance of Faecalibacterium prausnitzii correlate with changes in fecal calprotectin in patients with ileal Crohn's disease: a longitudinal study.

Björkqvist O, Repsilber D, Seifert M, Brislawn C, Jansson J, Engstrand L, Rangel I, Halfvarson J.

Scand J Gastroenterol. 2019 May;54(5):577-585. doi: 10.1080/00365521.2019.1599417. Epub 2019 May 19.


Mucosal-associated invariant T cells and oral microbiome in persistent apical periodontitis.

Davanian H, Gaiser RA, Silfverberg M, Hugerth LW, Sobkowiak MJ, Lu L, Healy K, Sandberg JK, Näsman P, Karlsson J, Jansson L, Engstrand L, Sällberg Chen M.

Int J Oral Sci. 2019 May 9;11(2):16. doi: 10.1038/s41368-019-0049-y.


Changes in Cervical Human Papillomavirus (HPV) Prevalence at a Youth Clinic in Stockholm, Sweden, a Decade After the Introduction of the HPV Vaccine.

Ährlund-Richter A, Cheng L, Hu YOO, Svensson M, Pennhag AAL, Ursu RG, Haeggblom L, Grün N, Ramqvist T, Engstrand L, Dalianis T, Du J.

Front Cell Infect Microbiol. 2019 Mar 20;9:59. doi: 10.3389/fcimb.2019.00059. eCollection 2019.


Investigation of the skin microbiome: swabs vs. biopsies.

Prast-Nielsen S, Tobin AM, Adamzik K, Powles A, Hugerth LW, Sweeney C, Kirby B, Engstrand L, Fry L.

Br J Dermatol. 2019 Sep;181(3):572-579. doi: 10.1111/bjd.17691. Epub 2019 May 6.


Which methods are appropriate for the detection of Staphylococcus argenteus and is it worthwhile to distinguish S. argenteus from S. aureus?

Kaden R, Engstrand L, Rautelin H, Johansson C.

Infect Drug Resist. 2018 Nov 21;11:2335-2344. doi: 10.2147/IDR.S179390. eCollection 2018.


Reproductive and Behavior Dysfunction Induced by Maternal Androgen Exposure and Obesity Is Likely Not Gut Microbiome-Mediated.

Lindheim L, Manti M, Fornes R, Bashir M, Czarnewski P, Diaz OE, Seifert M, Engstrand L, Villablanca EJ, Obermayer-Pietsch B, Stener-Victorin E.

J Endocr Soc. 2018 Oct 15;2(12):1363-1380. doi: 10.1210/js.2018-00266. eCollection 2018 Dec 1.


Colitis-induced colorectal cancer and intestinal epithelial estrogen receptor beta impact gut microbiota diversity.

Ibrahim A, Hugerth LW, Hases L, Saxena A, Seifert M, Thomas Q, Gustafsson JÅ, Engstrand L, Williams C.

Int J Cancer. 2019 Jun 15;144(12):3086-3098. doi: 10.1002/ijc.32037. Epub 2019 Jan 11.


Differential clustering of fecal and mucosa-associated microbiota in 'healthy' individuals.

Carstens A, Roos A, Andreasson A, Magnuson A, Agréus L, Halfvarson J, Engstrand L.

J Dig Dis. 2018 Dec;19(12):745-752. doi: 10.1111/1751-2980.12688.


Bacteriophages Synergize with the Gut Microbial Community To Combat Salmonella.

Hu YOO, Hugerth LW, Bengtsson C, Alisjahbana A, Seifert M, Kamal A, Sjöling Å, Midtvedt T, Norin E, Du J, Engstrand L.

mSystems. 2018 Oct 2;3(5). pii: e00119-18. doi: 10.1128/mSystems.00119-18. eCollection 2018 Sep-Oct.


A widely used sampling device in colorectal cancer screening programmes allows for large-scale microbiome studies.

Gudra D, Shoaie S, Fridmanis D, Klovins J, Wefer H, Silamikelis I, Peculis R, Kalnina I, Elbere I, Radovica-Spalvina I, Hultcrantz R, Šķenders Ģ, Leja M, Engstrand L.

Gut. 2019 Sep;68(9):1723-1725. doi: 10.1136/gutjnl-2018-316225. Epub 2018 Sep 21. No abstract available.


A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk.

Berthenet E, Yahara K, Thorell K, Pascoe B, Meric G, Mikhail JM, Engstrand L, Enroth H, Burette A, Megraud F, Varon C, Atherton JC, Smith S, Wilkinson TS, Hitchings MD, Falush D, Sheppard SK.

BMC Biol. 2018 Aug 2;16(1):84. doi: 10.1186/s12915-018-0550-3.


The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals.

Maixner F, Turaev D, Cazenave-Gassiot A, Janko M, Krause-Kyora B, Hoopmann MR, Kusebauch U, Sartain M, Guerriero G, O'Sullivan N, Teasdale M, Cipollini G, Paladin A, Mattiangeli V, Samadelli M, Tecchiati U, Putzer A, Palazoglu M, Meissen J, Lösch S, Rausch P, Baines JF, Kim BJ, An HJ, Gostner P, Egarter-Vigl E, Malfertheiner P, Keller A, Stark RW, Wenk M, Bishop D, Bradley DG, Fiehn O, Engstrand L, Moritz RL, Doble P, Franke A, Nebel A, Oeggl K, Rattei T, Grimm R, Zink A.

Curr Biol. 2018 Jul 23;28(14):2348-2355.e9. doi: 10.1016/j.cub.2018.05.067. Epub 2018 Jul 12.


Temporal and long-term gut microbiota variation in allergic disease: A prospective study from infancy to school age.

Simonyté Sjödin K, Hammarström ML, Rydén P, Sjödin A, Hernell O, Engstrand L, West CE.

Allergy. 2019 Jan;74(1):176-185. doi: 10.1111/all.13485. Epub 2018 Oct 18.


The vaginal microbiome amplifies sex hormone-associated cyclic changes in cervicovaginal inflammation and epithelial barrier disruption.

Bradley F, Birse K, Hasselrot K, Noël-Romas L, Introini A, Wefer H, Seifert M, Engstrand L, Tjernlund A, Broliden K, Burgener AD.

Am J Reprod Immunol. 2018 Jul;80(1):e12863. doi: 10.1111/aji.12863. Epub 2018 Apr 30.


PPI use and oesophageal cancer: What if the results are true?

Brusselaers N, Engstrand L, Lagergren J.

Cancer Epidemiol. 2018 Jun;54:139-140. doi: 10.1016/j.canep.2018.04.004. Epub 2018 Apr 9. No abstract available.


Maintenance proton pump inhibition therapy and risk of oesophageal cancer.

Brusselaers N, Engstrand L, Lagergren J.

Cancer Epidemiol. 2018 Apr;53:172-177. doi: 10.1016/j.canep.2018.02.004. Epub 2018 Feb 22.


Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates.

Nilsson A, Skarp A, Johansson C, Kaden R, Engstrand L, Rautelin H.

Microbiologyopen. 2018 Aug;7(4):e00583. doi: 10.1002/mbo3.583. Epub 2018 Feb 9.


Helicobacter pylori eradication treatment and the risk of gastric adenocarcinoma in a Western population.

Doorakkers E, Lagergren J, Engstrand L, Brusselaers N.

Gut. 2018 Dec;67(12):2092-2096. doi: 10.1136/gutjnl-2017-315363. Epub 2018 Jan 30.


Genomic and phenotypic characteristics of Swedish C. jejuni water isolates.

Nilsson A, Johansson C, Skarp A, Kaden R, Engstrand L, Rautelin H.

PLoS One. 2017 Dec 7;12(12):e0189222. doi: 10.1371/journal.pone.0189222. eCollection 2017.


Maintenance therapy with proton pump inhibitors and risk of gastric cancer: a nationwide population-based cohort study in Sweden.

Brusselaers N, Wahlin K, Engstrand L, Lagergren J.

BMJ Open. 2017 Oct 30;7(10):e017739. doi: 10.1136/bmjopen-2017-017739.


Faecal microbiota composition associates with abdominal pain in the general population.

Hadizadeh F, Bonfiglio F, Belheouane M, Vallier M, Sauer S, Bang C, Bujanda L, Andreasson A, Agreus L, Engstrand L, Talley NJ, Rafter J, Baines JF, Walter S, Franke A, D'Amato M.

Gut. 2018 Apr;67(4):778-779. doi: 10.1136/gutjnl-2017-314792. Epub 2017 Aug 1. No abstract available.


Bioinformatory-assisted analysis of next-generation sequencing data for precision medicine in pancreatic cancer.

Malgerud L, Lindberg J, Wirta V, Gustafsson-Liljefors M, Karimi M, Moro CF, Stecker K, Picker A, Huelsewig C, Stein M, Bohnert R, Del Chiaro M, Haas SL, Heuchel RL, Permert J, Maeurer MJ, Brock S, Verbeke CS, Engstrand L, Jackson DB, Grönberg H, Löhr JM.

Mol Oncol. 2017 Oct;11(10):1413-1429. doi: 10.1002/1878-0261.12108. Epub 2017 Aug 8.


Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F.

Jakobsson HE, Salvà-Serra F, Thorell K, Karlsson R, Gonzales-Silès L, Boulund F, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2017 Apr 6;5(14). pii: e00125-17. doi: 10.1128/genomeA.00125-17.


Helicobacter pylori eradication in the Swedish population.

Doorakkers E, Lagergren J, Gajulapuri VK, Callens S, Engstrand L, Brusselaers N.

Scand J Gastroenterol. 2017 Jun - Jul;52(6-7):678-685. doi: 10.1080/00365521.2017.1303844. Epub 2017 Mar 21.


Helicobacter pylori Adapts to Chronic Infection and Gastric Disease via pH-Responsive BabA-Mediated Adherence.

Bugaytsova JA, Björnham O, Chernov YA, Gideonsson P, Henriksson S, Mendez M, Sjöström R, Mahdavi J, Shevtsova A, Ilver D, Moonens K, Quintana-Hayashi MP, Moskalenko R, Aisenbrey C, Bylund G, Schmidt A, Åberg A, Brännström K, Königer V, Vikström S, Rakhimova L, Hofer A, Ögren J, Liu H, Goldman MD, Whitmire JM, Ådén J, Younson J, Kelly CG, Gilman RH, Chowdhury A, Mukhopadhyay AK, Nair GB, Papadakos KS, Martinez-Gonzalez B, Sgouras DN, Engstrand L, Unemo M, Danielsson D, Suerbaum S, Oscarson S, Morozova-Roche LA, Olofsson A, Gröbner G, Holgersson J, Esberg A, Strömberg N, Landström M, Eldridge AM, Chromy BA, Hansen LM, Solnick JV, Lindén SK, Haas R, Dubois A, Merrell DS, Schedin S, Remaut H, Arnqvist A, Berg DE, Borén T.

Cell Host Microbe. 2017 Mar 8;21(3):376-389. doi: 10.1016/j.chom.2017.02.013.


Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis.

Pammi M, Cope J, Tarr PI, Warner BB, Morrow AL, Mai V, Gregory KE, Kroll JS, McMurtry V, Ferris MJ, Engstrand L, Lilja HE, Hollister EB, Versalovic J, Neu J.

Microbiome. 2017 Mar 9;5(1):31. doi: 10.1186/s40168-017-0248-8. Review.


The role of the skin microbiome in atopic dermatitis: a systematic review.

Bjerre RD, Bandier J, Skov L, Engstrand L, Johansen JD.

Br J Dermatol. 2017 Nov;177(5):1272-1278. doi: 10.1111/bjd.15390. Epub 2017 Nov 12. Review.


Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins.

Vale FF, Nunes A, Oleastro M, Gomes JP, Sampaio DA, Rocha R, Vítor JM, Engstrand L, Pascoe B, Berthenet E, Sheppard SK, Hitchings MD, Mégraud F, Vadivelu J, Lehours P.

Sci Rep. 2017 Feb 16;7:42471. doi: 10.1038/srep42471.


Helicobacter pylori infection, chronic corpus atrophic gastritis and pancreatic cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort: A nested case-control study.

Huang J, Zagai U, Hallmans G, Nyrén O, Engstrand L, Stolzenberg-Solomon R, Duell EJ, Overvad K, Katzke VA, Kaaks R, Jenab M, Park JY, Murillo R, Trichopoulou A, Lagiou P, Bamia C, Bradbury KE, Riboli E, Aune D, Tsilidis KK, Capellá G, Agudo A, Krogh V, Palli D, Panico S, Weiderpass E, Tjønneland A, Olsen A, Martínez B, Redondo-Sanchez D, Chirlaque MD, Hm Peeters P, Regnér S, Lindkvist B, Naccarati A, Ardanaz E, Larrañaga N, Boutron-Ruault MC, Rebours V, Barré A, Bueno-de-Mesquita HB, Ye W.

Int J Cancer. 2017 Apr 15;140(8):1727-1735. doi: 10.1002/ijc.30590.


Functional variants in the sucrase-isomaltase gene associate with increased risk of irritable bowel syndrome.

Henström M, Diekmann L, Bonfiglio F, Hadizadeh F, Kuech EM, von Köckritz-Blickwede M, Thingholm LB, Zheng T, Assadi G, Dierks C, Heine M, Philipp U, Distl O, Money ME, Belheouane M, Heinsen FA, Rafter J, Nardone G, Cuomo R, Usai-Satta P, Galeazzi F, Neri M, Walter S, Simrén M, Karling P, Ohlsson B, Schmidt PT, Lindberg G, Dlugosz A, Agreus L, Andreasson A, Mayer E, Baines JF, Engstrand L, Portincasa P, Bellini M, Stanghellini V, Barbara G, Chang L, Camilleri M, Franke A, Naim HY, D'Amato M.

Gut. 2018 Feb;67(2):263-270. doi: 10.1136/gutjnl-2016-312456. Epub 2016 Nov 21.


First case of human bacteraemia by Catabacter hongkongensis in Scandinavia.

Kaden R, Thelander M, Engstrand L, Herrmann B.

New Microbes New Infect. 2016 Oct 4;15:6-8. eCollection 2017 Jan.


Towards a healthy stomach? Helicobacter pylori prevalence has dramatically decreased over 23 years in adults in a Swedish community.

Agréus L, Hellström PM, Talley NJ, Wallner B, Forsberg A, Vieth M, Veits L, Björkegren K, Engstrand L, Andreasson A.

United European Gastroenterol J. 2016 Oct;4(5):686-696. Epub 2015 Dec 18.


Eradication of Helicobacter pylori and Gastric Cancer: A Systematic Review and Meta-analysis of Cohort Studies.

Doorakkers E, Lagergren J, Engstrand L, Brusselaers N.

J Natl Cancer Inst. 2016 Jul 14;108(9). pii: djw132. doi: 10.1093/jnci/djw132. Print 2016 Sep. Review.


Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Jakobsson HE, Salvà-Serra F, Thorell K, Gonzales-Siles L, Boulund F, Karlsson R, Sikora P, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2016 Jun 16;4(3). pii: e00552-16. doi: 10.1128/genomeA.00552-16.


Stool frequency is associated with gut microbiota composition.

Hadizadeh F, Walter S, Belheouane M, Bonfiglio F, Heinsen FA, Andreasson A, Agreus L, Engstrand L, Baines JF, Rafter J, Franke A, D'Amato M.

Gut. 2017 Mar;66(3):559-560. doi: 10.1136/gutjnl-2016-311935. Epub 2016 Apr 28. No abstract available.


Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Salvà-Serra F, Jakobsson HE, Thorell K, Gonzales-Siles L, Hallbäck ET, Jaén-Luchoro D, Boulund F, Sikora P, Karlsson R, Svensson L, Bennasar A, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2016 Mar 24;4(2). pii: e00175-16. doi: 10.1128/genomeA.00175-16.


The 5300-year-old Helicobacter pylori genome of the Iceman.

Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL, Kusebauch U, Vigl EE, Malfertheiner P, Megraud F, O'Sullivan N, Cipollini G, Coia V, Samadelli M, Engstrand L, Linz B, Moritz RL, Grimm R, Krause J, Nebel A, Moodley Y, Rattei T, Zink A.

Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545.


Dormant phages of Helicobacter pylori reveal distinct populations in Europe.

Vale FF, Vadivelu J, Oleastro M, Breurec S, Engstrand L, Perets TT, Mégraud F, Lehours P.

Sci Rep. 2015 Sep 21;5:14333. doi: 10.1038/srep14333.


Composition of human faecal microbiota in resistance to Campylobacter infection.

Kampmann C, Dicksved J, Engstrand L, Rautelin H.

Clin Microbiol Infect. 2016 Jan;22(1):61.e1-61.e8. doi: 10.1016/j.cmi.2015.09.004. Epub 2015 Sep 11.


Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD.

Casén C, Vebø HC, Sekelja M, Hegge FT, Karlsson MK, Ciemniejewska E, Dzankovic S, Frøyland C, Nestestog R, Engstrand L, Munkholm P, Nielsen OH, Rogler G, Simrén M, Öhman L, Vatn MH, Rudi K.

Aliment Pharmacol Ther. 2015 Jul;42(1):71-83. doi: 10.1111/apt.13236. Epub 2015 May 14.

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