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Items: 23

1.

Synthesis of Janelia Fluor HaloTag and SNAP-Tag Ligands and Their Use in Cellular Imaging Experiments.

Grimm JB, Brown TA, English BP, Lionnet T, Lavis LD.

Methods Mol Biol. 2017;1663:179-188. doi: 10.1007/978-1-4939-7265-4_15.

PMID:
28924668
2.

Glutamate-induced RNA localization and translation in neurons.

Yoon YJ, Wu B, Buxbaum AR, Das S, Tsai A, English BP, Grimm JB, Lavis LD, Singer RH.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6877-E6886. Epub 2016 Oct 17.

3.

Rapid dynamics of general transcription factor TFIIB binding during preinitiation complex assembly revealed by single-molecule analysis.

Zhang Z, English BP, Grimm JB, Kazane SA, Hu W, Tsai A, Inouye C, You C, Piehler J, Schultz PG, Lavis LD, Revyakin A, Tjian R.

Genes Dev. 2016 Sep 15;30(18):2106-2118.

4.

Bright photoactivatable fluorophores for single-molecule imaging.

Grimm JB, English BP, Choi H, Muthusamy AK, Mehl BP, Dong P, Brown TA, Lippincott-Schwartz J, Liu Z, Lionnet T, Lavis LD.

Nat Methods. 2016 Dec;13(12):985-988. doi: 10.1038/nmeth.4034. Epub 2016 Oct 24.

PMID:
27776112
5.

Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies.

Tillberg PW, Chen F, Piatkevich KD, Zhao Y, Yu CC, English BP, Gao L, Martorell A, Suk HJ, Yoshida F, DeGennaro EM, Roossien DH, Gong G, Seneviratne U, Tannenbaum SR, Desimone R, Cai D, Boyden ES.

Nat Biotechnol. 2016 Sep;34(9):987-92. doi: 10.1038/nbt.3625. Epub 2016 Jul 4.

6.

Real-time quantification of single RNA translation dynamics in living cells.

Morisaki T, Lyon K, DeLuca KF, DeLuca JG, English BP, Zhang Z, Lavis LD, Grimm JB, Viswanathan S, Looger LL, Lionnet T, Stasevich TJ.

Science. 2016 Jun 17;352(6292):1425-9. doi: 10.1126/science.aaf0899. Epub 2016 May 5.

7.

RNA Polymerase II cluster dynamics predict mRNA output in living cells.

Cho WK, Jayanth N, English BP, Inoue T, Andrews JO, Conway W, Grimm JB, Spille JH, Lavis LD, Lionnet T, Cisse II.

Elife. 2016 May 3;5. pii: e13617. doi: 10.7554/eLife.13617.

8.
9.

Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes.

Katz ZB, English BP, Lionnet T, Yoon YJ, Monnier N, Ovryn B, Bathe M, Singer RH.

Elife. 2016 Jan 13;5. pii: e10415. doi: 10.7554/eLife.10415.

10.

Inferring transient particle transport dynamics in live cells.

Monnier N, Barry Z, Park HY, Su KC, Katz Z, English BP, Dey A, Pan K, Cheeseman IM, Singer RH, Bathe M.

Nat Methods. 2015 Sep;12(9):838-40. doi: 10.1038/nmeth.3483. Epub 2015 Jul 20.

11.

High-performance probes for light and electron microscopy.

Viswanathan S, Williams ME, Bloss EB, Stasevich TJ, Speer CM, Nern A, Pfeiffer BD, Hooks BM, Li WP, English BP, Tian T, Henry GL, Macklin JJ, Patel R, Gerfen CR, Zhuang X, Wang Y, Rubin GM, Looger LL.

Nat Methods. 2015 Jun;12(6):568-76. doi: 10.1038/nmeth.3365. Epub 2015 Apr 27.

12.

A general method to improve fluorophores for live-cell and single-molecule microscopy.

Grimm JB, English BP, Chen J, Slaughter JP, Zhang Z, Revyakin A, Patel R, Macklin JJ, Normanno D, Singer RH, Lionnet T, Lavis LD.

Nat Methods. 2015 Mar;12(3):244-50, 3 p following 250. doi: 10.1038/nmeth.3256. Epub 2015 Jan 19.

13.

Tracking surface glycans on live cancer cells with single-molecule sensitivity.

Jiang H, English BP, Hazan RB, Wu P, Ovryn B.

Angew Chem Int Ed Engl. 2015 Feb 2;54(6):1765-9. doi: 10.1002/anie.201407976. Epub 2014 Dec 16.

14.

Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.

Chen BC, Legant WR, Wang K, Shao L, Milkie DE, Davidson MW, Janetopoulos C, Wu XS, Hammer JA 3rd, Liu Z, English BP, Mimori-Kiyosue Y, Romero DP, Ritter AT, Lippincott-Schwartz J, Fritz-Laylin L, Mullins RD, Mitchell DM, Bembenek JN, Reymann AC, Böhme R, Grill SW, Wang JT, Seydoux G, Tulu US, Kiehart DP, Betzig E.

Science. 2014 Oct 24;346(6208):1257998. doi: 10.1126/science.1257998. Epub 2014 Oct 23.

15.

Photoswitchable red fluorescent protein with a large Stokes shift.

Piatkevich KD, English BP, Malashkevich VN, Xiao H, Almo SC, Singer RH, Verkhusha VV.

Chem Biol. 2014 Oct 23;21(10):1402-1414. doi: 10.1016/j.chembiol.2014.08.010. Epub 2014 Sep 18.

16.

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product.

Shyp V, Tankov S, Ermakov A, Kudrin P, English BP, Ehrenberg M, Tenson T, Elf J, Hauryliuk V.

EMBO Rep. 2012 Sep;13(9):835-9. doi: 10.1038/embor.2012.106. Epub 2012 Jul 20.

17.

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40.

Kuzmenko A, Tankov S, English BP, Tarassov I, Tenson T, Kamenski P, Elf J, Hauryliuk V.

Sci Rep. 2011;1:195. doi: 10.1038/srep00195. Epub 2011 Dec 14.

18.

Single-molecule investigations of the stringent response machinery in living bacterial cells.

English BP, Hauryliuk V, Sanamrad A, Tankov S, Dekker NH, Elf J.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):E365-73. doi: 10.1073/pnas.1102255108. Epub 2011 Jul 5.

19.

When does the Michaelis-Menten equation hold for fluctuating enzymes?

Min W, Gopich IV, English BP, Kou SC, Xie XS, Szabo A.

J Phys Chem B. 2006 Oct 19;110(41):20093-7.

PMID:
17034179
20.

Single-molecule Michaelis-Menten equations.

Kou SC, Cherayil BJ, Min W, English BP, Xie XS.

J Phys Chem B. 2005 Oct 20;109(41):19068-81.

PMID:
16853459
21.

Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited.

English BP, Min W, van Oijen AM, Lee KT, Luo G, Sun H, Cherayil BJ, Kou SC, Xie XS.

Nat Chem Biol. 2006 Feb;2(2):87-94. Epub 2005 Dec 25. Erratum in: Nat Chem Biol. 2006 Mar;2(3):168.

PMID:
16415859
22.

Fluctuating enzymes: lessons from single-molecule studies.

Min W, English BP, Luo G, Cherayil BJ, Kou SC, Xie XS.

Acc Chem Res. 2005 Dec;38(12):923-31. Review.

PMID:
16359164

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