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Items: 12


Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2.

Beck CR, Carvalho CMB, Akdemir ZC, Sedlazeck FJ, Song X, Meng Q, Hu J, Doddapaneni H, Chong Z, Chen ES, Thornton PC, Liu P, Yuan B, Withers M, Jhangiani SN, Kalra D, Walker K, English AC, Han Y, Chen K, Muzny DM, Ira G, Shaw CA, Gibbs RA, Hastings PJ, Lupski JR.

Cell. 2019 Mar 7;176(6):1310-1324.e10. doi: 10.1016/j.cell.2019.01.045. Epub 2019 Feb 28.


Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects.

Regier AA, Farjoun Y, Larson DE, Krasheninina O, Kang HM, Howrigan DP, Chen BJ, Kher M, Banks E, Ames DC, English AC, Li H, Xing J, Zhang Y, Matise T, Abecasis GR, Salerno W, Zody MC, Neale BM, Hall IM.

Nat Commun. 2018 Oct 2;9(1):4038. doi: 10.1038/s41467-018-06159-4.


SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads.

Hampton OA, English AC, Wang M, Salerno WJ, Liu Y, Muzny DM, Han Y, Wheeler DA, Worley KC, Lupski JR, Gibbs RA.

BMC Genomics. 2017 Oct 3;18(Suppl 6):691. doi: 10.1186/s12864-017-4021-y.


PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations.

Wang M, Beck CR, English AC, Meng Q, Buhay C, Han Y, Doddapaneni HV, Yu F, Boerwinkle E, Lupski JR, Muzny DM, Gibbs RA.

BMC Genomics. 2015 Mar 19;16:214. doi: 10.1186/s12864-015-1370-2.


Assessing structural variation in a personal genome-towards a human reference diploid genome.

English AC, Salerno WJ, Hampton OA, Gonzaga-Jauregui C, Ambreth S, Ritter DI, Beck CR, Davis CF, Dahdouli M, Ma S, Carroll A, Veeraraghavan N, Bruestle J, Drees B, Hastie A, Lam ET, White S, Mishra P, Wang M, Han Y, Zhang F, Stankiewicz P, Wheeler DA, Reid JG, Muzny DM, Rogers J, Sabo A, Worley KC, Lupski JR, Boerwinkle E, Gibbs RA.

BMC Genomics. 2015 Apr 11;16:286. doi: 10.1186/s12864-015-1479-3.


PBHoney: identifying genomic variants via long-read discordance and interrupted mapping.

English AC, Salerno WJ, Reid JG.

BMC Bioinformatics. 2014 Jun 10;15:180. doi: 10.1186/1471-2105-15-180.


Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.

English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RA.

PLoS One. 2012;7(11):e47768. doi: 10.1371/journal.pone.0047768. Epub 2012 Nov 21.


Prevalence of alternative splicing choices in Arabidopsis thaliana.

English AC, Patel KS, Loraine AE.

BMC Plant Biol. 2010 Jun 4;10:102. doi: 10.1186/1471-2229-10-102.


"Science cannot stop with science" Maurice Blondel and the sciences.

English AC.

J Hist Ideas. 2008 Apr;69(2):269-92. No abstract available.


Experimental and computational mapping of the binding surface of a crystalline protein.

English AC, Groom CR, Hubbard RE.

Protein Eng. 2001 Jan;14(1):47-59.


Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol.

English AC, Done SH, Caves LS, Groom CR, Hubbard RE.

Proteins. 1999 Dec 1;37(4):628-40.


Separation of organic and inorganic compounds.


Science. 1951 Mar 30;113(2935):367. No abstract available.


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