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Items: 35

1.

A dynamic model of lignin biosynthesis in Brachypodium distachyon.

Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle NL, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO.

Biotechnol Biofuels. 2018 Sep 19;11:253. doi: 10.1186/s13068-018-1241-6. eCollection 2018.

2.

Underground Azelaic Acid-Conferred Resistance to Pseudomonas syringae in Arabidopsis.

Cecchini NM, Roychoudhry S, Speed DJ, Steffes K, Tambe A, Zodrow K, Konstantinoff K, Jung HW, Engle NL, Tschaplinski TJ, Greenberg JT.

Mol Plant Microbe Interact. 2018 Oct 23:MPMI07180185R. doi: 10.1094/MPMI-07-18-0185-R. [Epub ahead of print]

PMID:
30156481
3.

Rex in Caldicellulosiruptor bescii: Novel regulon members and its effect on the production of ethanol and overflow metabolites.

Sander K, Chung D, Hyatt D, Westpheling J, Klingeman DM, Rodriguez M Jr, Engle NL, Tschaplinski TJ, Davison BH, Brown SD.

Microbiologyopen. 2018 May 23:e00639. doi: 10.1002/mbo3.639. [Epub ahead of print]

4.

A physical catalyst for the electrolysis of nitrogen to ammonia.

Song Y, Johnson D, Peng R, Hensley DK, Bonnesen PV, Liang L, Huang J, Yang F, Zhang F, Qiao R, Baddorf AP, Tschaplinski TJ, Engle NL, Hatzell MC, Wu Z, Cullen DA, Meyer HM 3rd, Sumpter BG, Rondinone AJ.

Sci Adv. 2018 Apr 27;4(4):e1700336. doi: 10.1126/sciadv.1700336. eCollection 2018 Apr.

5.

Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics.

Whitham JM, Moon JW, Rodriguez M Jr, Engle NL, Klingeman DM, Rydzak T, Abel MM, Tschaplinski TJ, Guss AM, Brown SD.

Biotechnol Biofuels. 2018 Apr 5;11:98. doi: 10.1186/s13068-018-1095-y. eCollection 2018.

6.

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome.

Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Pelletier DA, Weston DJ.

mSystems. 2018 Jan 23;3(1). pii: e00070-17. doi: 10.1128/mSystems.00070-17. eCollection 2018 Jan-Feb.

7.

Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus.

Yang Y, Yoo CG, Winkeler KA, Collins CM, Hinchee MAW, Jawdy SS, Gunter LE, Engle NL, Pu Y, Yang X, Tschaplinski TJ, Ragauskas AJ, Tuskan GA, Chen JG.

Biotechnol Biofuels. 2017 Dec 27;10:311. doi: 10.1186/s13068-017-0998-3. eCollection 2017.

8.

Corrigendum: Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.

Verbeke TJ, Giannone RJ, Klingeman DM, Engle NL, Rydzak T, Guss AM, Tschaplinski TJ, Brown SD, Hettich RL, Elkins JG.

Sci Rep. 2017 Jul 27;7:46875. doi: 10.1038/srep46875.

9.

Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.

Verbeke TJ, Giannone RJ, Klingeman DM, Engle NL, Rydzak T, Guss AM, Tschaplinski TJ, Brown SD, Hettich RL, Elkins JG.

Sci Rep. 2017 Feb 23;7:43355. doi: 10.1038/srep43355. Erratum in: Sci Rep. 2017 Jul 27;7:46875.

10.

Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass.

Poudel S, Giannone RJ, Rodriguez M Jr, Raman B, Martin MZ, Engle NL, Mielenz JR, Nookaew I, Brown SD, Tschaplinski TJ, Ussery D, Hettich RL.

Biotechnol Biofuels. 2017 Jan 10;10:14. doi: 10.1186/s13068-016-0697-5. eCollection 2017.

11.

Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass.

Li M, Pu Y, Yoo CG, Gjersing E, Decker SR, Doeppke C, Shollenberger T, Tschaplinski TJ, Engle NL, Sykes RW, Davis MF, Baxter HL, Mazarei M, Fu C, Dixon RA, Wang ZY, Neal Stewart C Jr, Ragauskas AJ.

Biotechnol Biofuels. 2017 Jan 3;10:12. doi: 10.1186/s13068-016-0695-7. eCollection 2017.

12.

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization.

Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL.

Front Microbiol. 2016 Apr 18;7:491. doi: 10.3389/fmicb.2016.00491. eCollection 2016.

13.

Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure.

Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD.

Biotechnol Biofuels. 2016 Feb 4;9:31. doi: 10.1186/s13068-016-0445-x. eCollection 2016.

14.

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?

Weston DJ, Rogers A, Tschaplinski TJ, Gunter LE, Jawdy SA, Engle NL, Heady LE, Tuskan GA, Wullschleger SD.

Ecol Evol. 2015 Jul;5(14):2839-50. doi: 10.1002/ece3.1565. Epub 2015 Jun 25.

15.

Genome-scale resources for Thermoanaerobacterium saccharolyticum.

Currie DH, Raman B, Gowen CM, Tschaplinski TJ, Land ML, Brown SD, Covalla SF, Klingeman DM, Yang ZK, Engle NL, Johnson CM, Rodriguez M, Shaw AJ, Kenealy WR, Lynd LR, Fong SS, Mielenz JR, Davison BH, Hogsett DA, Herring CD.

BMC Syst Biol. 2015 Jun 26;9:30. doi: 10.1186/s12918-015-0159-x.

16.

A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E.

Clarkson SM, Hamilton-Brehm SD, Giannone RJ, Engle NL, Tschaplinski TJ, Hettich RL, Elkins JG.

Biotechnol Biofuels. 2014 Dec 3;7(1):165. doi: 10.1186/s13068-014-0165-z. eCollection 2014.

17.

The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading.

Holwerda EK, Thorne PG, Olson DG, Amador-Noguez D, Engle NL, Tschaplinski TJ, van Dijken JP, Lynd LR.

Biotechnol Biofuels. 2014 Oct 21;7(1):155. doi: 10.1186/s13068-014-0155-1. eCollection 2014.

18.

ALD1 Regulates Basal Immune Components and Early Inducible Defense Responses in Arabidopsis.

Cecchini NM, Jung HW, Engle NL, Tschaplinski TJ, Greenberg JT.

Mol Plant Microbe Interact. 2015 Apr;28(4):455-66. doi: 10.1094/MPMI-06-14-0187-R.

19.

Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.

Zhao Q, Zeng Y, Yin Y, Pu Y, Jackson LA, Engle NL, Martin MZ, Tschaplinski TJ, Ding SY, Ragauskas AJ, Dixon RA.

Phytochemistry. 2015 Apr;112:170-8. doi: 10.1016/j.phytochem.2014.07.008. Epub 2014 Aug 5.

PMID:
25107662
20.

Improvement of cellulose catabolism in Clostridium cellulolyticum by sporulation abolishment and carbon alleviation.

Li Y, Xu T, Tschaplinski TJ, Engle NL, Yang Y, Graham DE, He Z, Zhou J.

Biotechnol Biofuels. 2014 Feb 20;7(1):25. doi: 10.1186/1754-6834-7-25.

21.

Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor.

Tschaplinski TJ, Plett JM, Engle NL, Deveau A, Cushman KC, Martin MZ, Doktycz MJ, Tuskan GA, Brun A, Kohler A, Martin F.

Mol Plant Microbe Interact. 2014 Jun;27(6):546-56. doi: 10.1094/MPMI-09-13-0286-R.

22.

Industrial robustness: understanding the mechanism of tolerance for the Populus hydrolysate-tolerant mutant strain of Clostridium thermocellum.

Linville JL, Rodriguez M Jr, Land M, Syed MH, Engle NL, Tschaplinski TJ, Mielenz JR, Cox CD.

PLoS One. 2013 Oct 21;8(10):e78829. doi: 10.1371/journal.pone.0078829. eCollection 2013.

23.

The fate of lignin during hydrothermal pretreatment.

Trajano HL, Engle NL, Foston M, Ragauskas AJ, Tschaplinski TJ, Wyman CE.

Biotechnol Biofuels. 2013 Aug 1;6(1):110. doi: 10.1186/1754-6834-6-110.

24.

Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

Yang S, Pan C, Tschaplinski TJ, Hurst GB, Engle NL, Zhou W, Dam P, Xu Y, Rodriguez M Jr, Dice L, Johnson CM, Davison BH, Brown SD.

PLoS One. 2013 Jul 16;8(7):e68886. doi: 10.1371/journal.pone.0068886. Print 2013. Erratum in: PLoS One. 2014;9(6):e101305.

25.

Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production.

Shen H, Poovaiah CR, Ziebell A, Tschaplinski TJ, Pattathil S, Gjersing E, Engle NL, Katahira R, Pu Y, Sykes R, Chen F, Ragauskas AJ, Mielenz JR, Hahn MG, Davis M, Stewart CN Jr, Dixon RA.

Biotechnol Biofuels. 2013 May 7;6(1):71. doi: 10.1186/1754-6834-6-71.

26.

Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways.

van der Veen D, Lo J, Brown SD, Johnson CM, Tschaplinski TJ, Martin M, Engle NL, van den Berg RA, Argyros AD, Caiazza NC, Guss AM, Lynd LR.

J Ind Microbiol Biotechnol. 2013 Jul;40(7):725-34. doi: 10.1007/s10295-013-1275-5. Epub 2013 May 5.

PMID:
23645383
27.

Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media.

Kridelbaugh DM, Nelson J, Engle NL, Tschaplinski TJ, Graham DE.

Bioresour Technol. 2013 Feb;130:125-35. doi: 10.1016/j.biortech.2012.12.006. Epub 2012 Dec 27.

PMID:
23306120
28.

Evaluation of the bioconversion of genetically modified switchgrass using simultaneous saccharification and fermentation and a consolidated bioprocessing approach.

Yee KL, Rodriguez M Jr, Tschaplinski TJ, Engle NL, Martin MZ, Fu C, Wang ZY, Hamilton-Brehm SD, Mielenz JR.

Biotechnol Biofuels. 2012 Nov 12;5(1):81. doi: 10.1186/1754-6834-5-81.

29.

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog.

Tschaplinski TJ, Standaert RF, Engle NL, Martin MZ, Sangha AK, Parks JM, Smith JC, Samuel R, Jiang N, Pu Y, Ragauskas AJ, Hamilton CY, Fu C, Wang ZY, Davison BH, Dixon RA, Mielenz JR.

Biotechnol Biofuels. 2012 Sep 21;5(1):71. doi: 10.1186/1754-6834-5-71.

30.

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.

Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD.

BMC Genomics. 2012 Jul 23;13:336. doi: 10.1186/1471-2164-13-336.

31.

Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations.

Li Y, Tschaplinski TJ, Engle NL, Hamilton CY, Rodriguez M Jr, Liao JC, Schadt CW, Guss AM, Yang Y, Graham DE.

Biotechnol Biofuels. 2012 Jan 4;5(1):2. doi: 10.1186/1754-6834-5-2.

32.

Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725.

Yang SJ, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MW.

Appl Environ Microbiol. 2009 Jul;75(14):4762-9. doi: 10.1128/AEM.00236-09. Epub 2009 May 22.

33.

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations.

Yang S, Tschaplinski TJ, Engle NL, Carroll SL, Martin SL, Davison BH, Palumbo AV, Rodriguez M Jr, Brown SD.

BMC Genomics. 2009 Jan 20;10:34. doi: 10.1186/1471-2164-10-34.

34.

Selective separation of hydroxide from alkaline nuclear tank waste by liquid-liquid extraction with weak hydroxy acids.

Chambliss CK, Haverlock TI, Bonnesen PV, Engle NL, Moyer BA.

Environ Sci Technol. 2002 Apr 15;36(8):1861-7.

PMID:
11993889
35.

Tribenzo-18-crown-6 acetonitrile disolvate.

Bryan JC, Engle NL, Sachleben RA, Hay BP.

Acta Crystallogr C. 2001 Nov;57(Pt 11):1359-60. Epub 2001 Nov 13.

PMID:
11706275

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