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Items: 20

1.

A Systems-Level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells.

Billing AM, Dib SS, Bhagwat AM, da Silva IT, Drummond RD, Hayat S, Al-Mismar R, Ben Hamidane H, Goswami N, Engholm-Keller K, Larsen MR, Suhre K, Rafii A, Graumann J.

Mol Cell Proteomics. 2019 Jul 22. pii: mcp.RA119.001356. doi: 10.1074/mcp.RA119.001356. [Epub ahead of print]

2.

The interaction of assembly protein AP180 and clathrin is inhibited by multi-site phospho-mimetics.

Moshkanbaryans L, Chan LS, Engholm-Keller K, Wark JR, Robinson PJ, Graham ME.

Neurochem Int. 2019 Oct;129:104474. doi: 10.1016/j.neuint.2019.104474. Epub 2019 May 23.

PMID:
31129113
3.

The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation.

Engholm-Keller K, Waardenberg AJ, Müller JA, Wark JR, Fernando RN, Arthur JW, Robinson PJ, Dietrich D, Schoch S, Graham ME.

PLoS Biol. 2019 Mar 1;17(3):e3000170. doi: 10.1371/journal.pbio.3000170. eCollection 2019 Mar.

4.

Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen.

Kozlov SV, Waardenberg AJ, Engholm-Keller K, Arthur JW, Graham ME, Lavin M.

Mol Cell Proteomics. 2016 Mar;15(3):1032-47. doi: 10.1074/mcp.M115.055723. Epub 2015 Dec 23.

5.

Improving the Phosphoproteome Coverage for Limited Sample Amounts Using TiO2-SIMAC-HILIC (TiSH) Phosphopeptide Enrichment and Fractionation.

Engholm-Keller K, Larsen MR.

Methods Mol Biol. 2016;1355:161-77. doi: 10.1007/978-1-4939-3049-4_11.

PMID:
26584925
6.

Global analysis of myocardial peptides containing cysteines with irreversible sulfinic and sulfonic acid post-translational modifications.

Paulech J, Liddy KA, Engholm-Keller K, White MY, Cordwell SJ.

Mol Cell Proteomics. 2015 Mar;14(3):609-20. doi: 10.1074/mcp.M114.044347. Epub 2015 Jan 5.

7.

Identification of novel protein functions and signaling mechanisms by genetics and quantitative phosphoproteomics in Caenorhabditis elegans.

Fredens J, Engholm-Keller K, Møller-Jensen J, Larsen MR, Færgeman NJ.

Methods Mol Biol. 2014;1188:107-24. doi: 10.1007/978-1-4939-1142-4_9.

PMID:
25059608
8.

Structural basis for phosphorylation and lysine acetylation cross-talk in a kinase motif associated with myocardial ischemia and cardioprotection.

Parker BL, Shepherd NE, Trefely S, Hoffman NJ, White MY, Engholm-Keller K, Hambly BD, Larsen MR, James DE, Cordwell SJ.

J Biol Chem. 2014 Sep 12;289(37):25890-906. doi: 10.1074/jbc.M114.556035. Epub 2014 Jul 9. Erratum in: J Biol Chem. 2014 Dec 5;289(49):33875.

9.

Comprehensive quantitative comparison of the membrane proteome, phosphoproteome, and sialiome of human embryonic and neural stem cells.

Melo-Braga MN, Schulz M, Liu Q, Swistowski A, Palmisano G, Engholm-Keller K, Jakobsen L, Zeng X, Larsen MR.

Mol Cell Proteomics. 2014 Jan;13(1):311-28. doi: 10.1074/mcp.M112.026898. Epub 2013 Oct 30.

10.

Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture.

Liberski AR, Al-Noubi MN, Rahman ZH, Halabi NM, Dib SS, Al-Mismar R, Billing AM, Krishnankutty R, Ahmad FS, Raynaud CM, Rafii A, Engholm-Keller K, Graumann J.

J Proteome Res. 2013 Jul 5;12(7):3233-45. doi: 10.1021/pr400099j. Epub 2013 Jun 25.

11.

Technologies and challenges in large-scale phosphoproteomics.

Engholm-Keller K, Larsen MR.

Proteomics. 2013 Mar;13(6):910-31. doi: 10.1002/pmic.201200484. Review.

PMID:
23404676
12.

TiSH--a robust and sensitive global phosphoproteomics strategy employing a combination of TiO2, SIMAC, and HILIC.

Engholm-Keller K, Birck P, Størling J, Pociot F, Mandrup-Poulsen T, Larsen MR.

J Proteomics. 2012 Oct 22;75(18):5749-61. doi: 10.1016/j.jprot.2012.08.007. Epub 2012 Aug 18.

PMID:
22906719
13.

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development.

Palmisano G, Parker BL, Engholm-Keller K, Lendal SE, Kulej K, Schulz M, Schwämmle V, Graham ME, Saxtorph H, Cordwell SJ, Larsen MR.

Mol Cell Proteomics. 2012 Nov;11(11):1191-202. doi: 10.1074/mcp.M112.017509. Epub 2012 Jul 26.

14.

Chemical deamidation: a common pitfall in large-scale N-linked glycoproteomic mass spectrometry-based analyses.

Palmisano G, Melo-Braga MN, Engholm-Keller K, Parker BL, Larsen MR.

J Proteome Res. 2012 Mar 2;11(3):1949-57. doi: 10.1021/pr2011268. Epub 2012 Feb 22.

PMID:
22256963
15.

Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling.

Engholm-Keller K, Hansen TA, Palmisano G, Larsen MR.

J Proteome Res. 2011 Dec 2;10(12):5383-97. doi: 10.1021/pr200641x. Epub 2011 Oct 26.

PMID:
21955146
16.

Quantitative proteomics by amino acid labeling in C. elegans.

Fredens J, Engholm-Keller K, Giessing A, Pultz D, Larsen MR, Højrup P, Møller-Jensen J, Færgeman NJ.

Nat Methods. 2011 Aug 28;8(10):845-7. doi: 10.1038/nmeth.1675.

PMID:
21874006
17.

Titanium dioxide as chemo-affinity chromatographic sorbent of biomolecular compounds--applications in acidic modification-specific proteomics.

Engholm-Keller K, Larsen MR.

J Proteomics. 2011 Dec 21;75(2):317-28. doi: 10.1016/j.jprot.2011.07.024. Epub 2011 Aug 4. Review.

PMID:
21840430
18.

Quantitative N-linked glycoproteomics of myocardial ischemia and reperfusion injury reveals early remodeling in the extracellular environment.

Parker BL, Palmisano G, Edwards AV, White MY, Engholm-Keller K, Lee A, Scott NE, Kolarich D, Hambly BD, Packer NH, Larsen MR, Cordwell SJ.

Mol Cell Proteomics. 2011 Aug;10(8):M110.006833. doi: 10.1074/mcp.M110.006833. Epub 2011 Mar 25.

19.

A proteome-scale study on in vivo protein Nα-acetylation using an optimized method.

Zhang X, Ye J, Engholm-Keller K, Højrup P.

Proteomics. 2011 Jan;11(1):81-93. doi: 10.1002/pmic.201000453. Epub 2010 Dec 6.

PMID:
21182196
20.

Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry.

Palmisano G, Lendal SE, Engholm-Keller K, Leth-Larsen R, Parker BL, Larsen MR.

Nat Protoc. 2010 Dec;5(12):1974-82. doi: 10.1038/nprot.2010.167. Epub 2010 Nov 18.

PMID:
21127490

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