Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 33

1.

Cooperative STAT/NF-κB signaling regulates lymphoma metabolic reprogramming and aberrant GOT2 expression.

Feist M, Schwarzfischer P, Heinrich P, Sun X, Kemper J, von Bonin F, Perez-Rubio P, Taruttis F, Rehberg T, Dettmer K, Gronwald W, Reinders J, Engelmann JC, Dudek J, Klapper W, Trümper L, Spang R, Oefner PJ, Kube D.

Nat Commun. 2018 Apr 17;9(1):1514. doi: 10.1038/s41467-018-03803-x.

2.

Selenium-binding protein 1 is down-regulated in malignant melanoma.

Schott M, de Jel MM, Engelmann JC, Renner P, Geissler EK, Bosserhoff AK, Kuphal S.

Oncotarget. 2018 Jan 2;9(12):10445-10456. doi: 10.18632/oncotarget.23853. eCollection 2018 Feb 13.

3.

Zygotic Genome Activation Occurs Shortly after Fertilization in Maize.

Chen J, Strieder N, Krohn NG, Cyprys P, Sprunck S, Engelmann JC, Dresselhaus T.

Plant Cell. 2017 Sep;29(9):2106-2125. doi: 10.1105/tpc.17.00099. Epub 2017 Aug 16.

4.

Phosphorylation of Argonaute proteins affects mRNA binding and is essential for microRNA-guided gene silencing in vivo.

Quévillon Huberdeau M, Zeitler DM, Hauptmann J, Bruckmann A, Fressigné L, Danner J, Piquet S, Strieder N, Engelmann JC, Jannot G, Deutzmann R, Simard MJ, Meister G.

EMBO J. 2017 Jul 14;36(14):2088-2106. doi: 10.15252/embj.201696386. Epub 2017 Jun 23.

5.

External calibration with Drosophila whole-cell spike-ins delivers absolute mRNA fold changes from human RNA-Seq and qPCR data.

Taruttis F, Feist M, Schwarzfischer P, Gronwald W, Kube D, Spang R, Engelmann JC.

Biotechniques. 2017 Feb 1;62(2):53-61. doi: 10.2144/000114514.

6.

Comprehensive Metaboproteomics of Burkitt's and Diffuse Large B-Cell Lymphoma Cell Lines and Primary Tumor Tissues Reveals Distinct Differences in Pyruvate Content and Metabolism.

Schwarzfischer P, Reinders J, Dettmer K, Kleo K, Dimitrova L, Hummel M, Feist M, Kube D, Szczepanowski M, Klapper W, Taruttis F, Engelmann JC, Spang R, Gronwald W, Oefner PJ.

J Proteome Res. 2017 Mar 3;16(3):1105-1120. doi: 10.1021/acs.jproteome.6b00164. Epub 2017 Feb 16.

PMID:
28161958
7.

High-Dimensional Profiling for Computational Diagnosis.

Lottaz C, Gronwald W, Spang R, Engelmann JC.

Methods Mol Biol. 2017;1526:205-229.

PMID:
27896744
8.

Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants.

Dueck A, Evers M, Henz SR, Unger K, Eichner N, Merkl R, Berezikov E, Engelmann JC, Weigel D, Wenzl S, Meister G.

BMC Genomics. 2016 Nov 2;17(1):853.

9.

Synergy of interleukin 10 and toll-like receptor 9 signalling in B cell proliferation: Implications for lymphoma pathogenesis.

Feist M, Kemper J, Taruttis F, Rehberg T, Engelmann JC, Gronwald W, Hummel M, Spang R, Kube D.

Int J Cancer. 2017 Mar 1;140(5):1147-1158. doi: 10.1002/ijc.30444. Epub 2016 Oct 17.

10.

Correction: Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype.

Coll-Bonfill N, Peinado VI, Pisano MV, Párrizas M, Blanco I, Evers M, Engelmann JC, García-Lucio J, Tura-Ceide O, Meister G, Barberà JA, Musri MM.

PLoS One. 2016 Aug 25;11(8):e0162117. doi: 10.1371/journal.pone.0162117. eCollection 2016.

11.

Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype.

Coll-Bonfill N, Peinado VI, Pisano MV, Párrizas M, Blanco I, Evers M, Engelmann JC, García-Lucio J, Tura-Ceide O, Meister G, Barberà JA, Musri MM.

PLoS One. 2016 Jul 21;11(7):e0159460. doi: 10.1371/journal.pone.0159460. eCollection 2016. Erratum in: PLoS One. 2016;11(8):e0162117.

12.

miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.

Evers M, Huttner M, Dueck A, Meister G, Engelmann JC.

BMC Bioinformatics. 2015 Nov 5;16:370. doi: 10.1186/s12859-015-0798-3.

13.

The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation.

Loedige I, Jakob L, Treiber T, Ray D, Stotz M, Treiber N, Hennig J, Cook KB, Morris Q, Hughes TR, Engelmann JC, Krahn MP, Meister G.

Cell Rep. 2015 Nov 10;13(6):1206-1220. doi: 10.1016/j.celrep.2015.09.068. Epub 2015 Oct 29.

14.

A statistical approach to virtual cellular experiments: improved causal discovery using accumulation IDA (aIDA).

Taruttis F, Spang R, Engelmann JC.

Bioinformatics. 2015 Dec 1;31(23):3807-14. doi: 10.1093/bioinformatics/btv461. Epub 2015 Aug 6.

15.

Data Normalization of (1)H NMR Metabolite Fingerprinting Data Sets in the Presence of Unbalanced Metabolite Regulation.

Hochrein J, Zacharias HU, Taruttis F, Samol C, Engelmann JC, Spang R, Oefner PJ, Gronwald W.

J Proteome Res. 2015 Aug 7;14(8):3217-28. doi: 10.1021/acs.jproteome.5b00192. Epub 2015 Jul 22.

PMID:
26147738
16.

Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma.

Engelmann JC, Amann T, Ott-Rötzer B, Nützel M, Reinders Y, Reinders J, Thasler WE, Kristl T, Teufel A, Huber CG, Oefner PJ, Spang R, Hellerbrand C.

PLoS Comput Biol. 2015 May 28;11(5):e1004293. doi: 10.1371/journal.pcbi.1004293. eCollection 2015 May.

17.

siPools: highly complex but accurately defined siRNA pools eliminate off-target effects.

Hannus M, Beitzinger M, Engelmann JC, Weickert MT, Spang R, Hannus S, Meister G.

Nucleic Acids Res. 2014 Jul;42(12):8049-61. doi: 10.1093/nar/gku480. Epub 2014 May 29.

18.

Transcriptome sequencing of melanocytic nevi and melanomas from Grm1 transgenic mice to determine melanoma driver mutations.

de Jel MM, Engelmann JC, Kunz M, Schiffner S, Kuphal S, Bosserhoff AK.

Pigment Cell Melanoma Res. 2014 Jul;27(4):678-80. doi: 10.1111/pcmr.12244. Epub 2014 Apr 7. No abstract available.

PMID:
24661573
19.

Increased expression of c-Jun in nonalcoholic fatty liver disease.

Dorn C, Engelmann JC, Saugspier M, Koch A, Hartmann A, Müller M, Spang R, Bosserhoff A, Hellerbrand C.

Lab Invest. 2014 Apr;94(4):394-408. doi: 10.1038/labinvest.2014.3. Epub 2014 Feb 3.

20.

DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases.

Aryee MJ, Liu W, Engelmann JC, Nuhn P, Gurel M, Haffner MC, Esopi D, Irizarry RA, Getzenberg RH, Nelson WG, Luo J, Xu J, Isaacs WB, Bova GS, Yegnasubramanian S.

Sci Transl Med. 2013 Jan 23;5(169):169ra10. doi: 10.1126/scitranslmed.3005211.

21.

Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing.

Dolnik A, Engelmann JC, Scharfenberger-Schmeer M, Mauch J, Kelkenberg-Schade S, Haldemann B, Fries T, Krönke J, Kühn MW, Paschka P, Kayser S, Wolf S, Gaidzik VI, Schlenk RF, Rücker FG, Döhner H, Lottaz C, Döhner K, Bullinger L.

Blood. 2012 Nov 1;120(18):e83-92. doi: 10.1182/blood-2011-12-401471. Epub 2012 Sep 13.

22.

A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.

Engelmann JC, Spang R.

PLoS One. 2012;7(7):e40634. doi: 10.1371/journal.pone.0040634. Epub 2012 Jul 17.

23.

Early senescence and cell death in Arabidopsis saul1 mutants involves the PAD4-dependent salicylic acid pathway.

Vogelmann K, Drechsel G, Bergler J, Subert C, Philippar K, Soll J, Engelmann JC, Engelsdorf T, Voll LM, Hoth S.

Plant Physiol. 2012 Aug;159(4):1477-87. doi: 10.1104/pp.112.196220. Epub 2012 Jun 15.

24.

Prognostic value of genetic alterations in children with first bone marrow relapse of childhood B-cell precursor acute lymphoblastic leukemia.

Krentz S, Hof J, Mendioroz A, Vaggopoulou R, Dörge P, Lottaz C, Engelmann JC, Groeneveld TW, Körner G, Seeger K, Hagemeier C, Henze G, Eckert C, von Stackelberg A, Kirschner-Schwabe R.

Leukemia. 2013 Feb;27(2):295-304. doi: 10.1038/leu.2012.155. Epub 2012 Jun 13.

PMID:
22699455
25.

Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations.

Förster F, Beisser D, Grohme MA, Liang C, Mali B, Siegl AM, Engelmann JC, Shkumatov AV, Schokraie E, Müller T, Schnölzer M, Schill RO, Frohme M, Dandekar T.

Bioinform Biol Insights. 2012;6:69-96. doi: 10.4137/BBI.S9150. Epub 2012 Apr 23.

26.

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades.

Förster F, Liang C, Shkumatov A, Beisser D, Engelmann JC, Schnölzer M, Frohme M, Müller T, Schill RO, Dandekar T.

BMC Genomics. 2009 Oct 12;10:469. doi: 10.1186/1471-2164-10-469.

27.

Agrobacterium tumefaciens promotes tumor induction by modulating pathogen defense in Arabidopsis thaliana.

Lee CW, Efetova M, Engelmann JC, Kramell R, Wasternack C, Ludwig-Müller J, Hedrich R, Deeken R.

Plant Cell. 2009 Sep;21(9):2948-62. doi: 10.1105/tpc.108.064576. Epub 2009 Sep 30.

28.

Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species.

Engelmann JC, Rahmann S, Wolf M, Schultz J, Fritzilas E, Kneitz S, Dandekar T, Müller T.

Mol Ecol Resour. 2009 Jan;9(1):83-93. doi: 10.1111/j.1755-0998.2008.02199.x. Epub 2008 Oct 6.

PMID:
21564570
29.

Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis.

Blenk S, Engelmann JC, Pinkert S, Weniger M, Schultz J, Rosenwald A, Müller-Hermelink HK, Müller T, Dandekar T.

BMC Cancer. 2008 Apr 16;8:106. doi: 10.1186/1471-2407-8-106.

30.

Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach.

Engelmann JC, Deeken R, Müller T, Nimtz G, Roelfsema MR, Hedrich R.

Adv Appl Bioinform Chem. 2008;1:71-83. Epub 2008 Oct 8.

31.

Unsupervised meta-analysis on diverse gene expression datasets allows insight into gene function and regulation.

Engelmann JC, Schwarz R, Blenk S, Friedrich T, Seibel PN, Dandekar T, Müller T.

Bioinform Biol Insights. 2008 May 26;2:265-80.

33.

An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach.

Deeken R, Engelmann JC, Efetova M, Czirjak T, Müller T, Kaiser WM, Tietz O, Krischke M, Mueller MJ, Palme K, Dandekar T, Hedrich R.

Plant Cell. 2006 Dec;18(12):3617-34. Epub 2006 Dec 15.

Supplemental Content

Loading ...
Support Center