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Aggregation of Mod5 is affected by tRNA binding with implications for tRNA gene-mediated silencing.

Read DF, Waller TJ, Tse E, Southworth DR, Engelke DR, Smaldino PJ.

FEBS Lett. 2017 Jun;591(11):1601-1610. doi: 10.1002/1873-3468.12627. Epub 2017 May 22.


DEK-targeting DNA aptamers as therapeutics for inflammatory arthritis.

Mor-Vaknin N, Saha A, Legendre M, Carmona-Rivera C, Amin MA, Rabquer BJ, Gonzales-Hernandez MJ, Jorns J, Mohan S, Yalavarthi S, Pai DA, Angevine K, Almburg SJ, Knight JS, Adams BS, Koch AE, Fox DA, Engelke DR, Kaplan MJ, Markovitz DM.

Nat Commun. 2017 Feb 6;8:14252. doi: 10.1038/ncomms14252.


The human tRNA-modifying protein, TRIT1, forms amyloid fibers in vitro.

Waller TJ, Read DF, Engelke DR, Smaldino PJ.

Gene. 2017 May 15;612:19-24. doi: 10.1016/j.gene.2016.10.041. Epub 2016 Oct 29.


A Novel Recombinant DNA System for High Efficiency Affinity Purification of Proteins in Saccharomyces cerevisiae.

Carrick BH, Hao L, Smaldino PJ, Engelke DR.

G3 (Bethesda). 2015 Dec 29;6(3):573-8. doi: 10.1534/g3.115.025106.


The evolution of RNase P.

Engelke DR, Fierke CA.

RNA. 2015 Apr;21(4):517-8. doi: 10.1261/rna.050732.115. No abstract available.


A sequence-specific interaction between the Saccharomyces cerevisiae rRNA gene repeats and a locus encoding an RNA polymerase I subunit affects ribosomal DNA stability.

Cahyani I, Cridge AG, Engelke DR, Ganley AR, O'Sullivan JM.

Mol Cell Biol. 2015 Feb;35(3):544-54. doi: 10.1128/MCB.01249-14. Epub 2014 Nov 24.


The cytoplasmic and nuclear populations of the eukaryote tRNA-isopentenyl transferase have distinct functions with implications in human cancer.

Smaldino PJ, Read DF, Pratt-Hyatt M, Hopper AK, Engelke DR.

Gene. 2015 Feb 1;556(1):13-8. doi: 10.1016/j.gene.2014.09.049. Epub 2014 Sep 26. Review.


RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template.

Pai DA, Kaplan CD, Kweon HK, Murakami K, Andrews PC, Engelke DR.

RNA. 2014 May;20(5):644-55. doi: 10.1261/rna.040444.113. Epub 2014 Mar 10.


Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing.

Pratt-Hyatt M, Pai DA, Haeusler RA, Wozniak GG, Good PD, Miller EL, McLeod IX, Yates JR 3rd, Hopper AK, Engelke DR.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):E3081-9. doi: 10.1073/pnas.1219946110. Epub 2013 Jul 29. Erratum in: Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2397.


The nucleolus: a raft adrift in the nuclear sea or the keystone in nuclear structure?

O'Sullivan JM, Pai DA, Cridge AG, Engelke DR, Ganley AR.

Biomol Concepts. 2013 Jun;4(3):277-86. doi: 10.1515/bmc-2012-0043. Review.


Silencing near tRNA genes is nucleosome-mediated and distinct from boundary element function.

Good PD, Kendall A, Ignatz-Hoover J, Miller EL, Pai DA, Rivera SR, Carrick B, Engelke DR.

Gene. 2013 Aug 15;526(1):7-15. doi: 10.1016/j.gene.2013.05.016. Epub 2013 May 23.


RNase P enzymes: divergent scaffolds for a conserved biological reaction.

Howard MJ, Liu X, Lim WH, Klemm BP, Fierke CA, Koutmos M, Engelke DR.

RNA Biol. 2013 Jun;10(6):909-14. doi: 10.4161/rna.24513. Epub 2013 Apr 1.


tRNA gene identity affects nuclear positioning.

Rodley CD, Pai DA, Mills TA, Engelke DR, O'Sullivan JM.

PLoS One. 2011;6(12):e29267. doi: 10.1371/journal.pone.0029267. Epub 2011 Dec 19.


Binding and cleavage of unstructured RNA by nuclear RNase P.

Marvin MC, Walker SC, Fierke CA, Engelke DR.

RNA. 2011 Aug;17(8):1429-40. doi: 10.1261/rna.2633611. Epub 2011 Jun 10.


Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae.

Marvin MC, Clauder-M√ľnster S, Walker SC, Sarkeshik A, Yates JR 3rd, Steinmetz LM, Engelke DR.

RNA. 2011 Aug;17(8):1441-50. doi: 10.1261/rna.2737511. Epub 2011 Jun 10.


The dual use of RNA aptamer sequences for affinity purification and localization studies of RNAs and RNA-protein complexes.

Walker SC, Good PD, Gipson TA, Engelke DR.

Methods Mol Biol. 2011;714:423-44. doi: 10.1007/978-1-61779-005-8_26.


Selection of RNA aptamers that bind HIV-1 LTR DNA duplexes: strand invaders.

Srisawat C, Engelke DR.

Nucleic Acids Res. 2010 Dec;38(22):8306-15. doi: 10.1093/nar/gkq696. Epub 2010 Aug 6.


Cellular dynamics of tRNAs and their genes.

Hopper AK, Pai DA, Engelke DR.

FEBS Lett. 2010 Jan 21;584(2):310-7. doi: 10.1016/j.febslet.2009.11.053. Review.


Broadening the mission of an RNA enzyme.

Marvin MC, Engelke DR.

J Cell Biochem. 2009 Dec 15;108(6):1244-51. doi: 10.1002/jcb.22367. Review.


Spatial organization of genes as a component of regulated expression.

Pai DA, Engelke DR.

Chromosoma. 2010 Feb;119(1):13-25. doi: 10.1007/s00412-009-0236-2. Epub 2009 Aug 30. Review.


Prediction and verification of mouse tRNA gene families.

Coughlin DJ, Babak T, Nihranz C, Hughes TR, Engelke DR.

RNA Biol. 2009 Apr-Jun;6(2):195-202. Epub 2009 May 1.


RNase P: increased versatility through protein complexity?

Marvin MC, Engelke DR.

RNA Biol. 2009 Jan-Mar;6(1):40-2. Epub 2009 Jan 3. Review.


Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release.

Hsieh J, Walker SC, Fierke CA, Engelke DR.

RNA. 2009 Feb;15(2):224-34. doi: 10.1261/rna.1309409. Epub 2008 Dec 17.


A protein-only RNase P in human mitochondria.

Walker SC, Engelke DR.

Cell. 2008 Oct 31;135(3):412-4. doi: 10.1016/j.cell.2008.10.010.


RNA affinity tags for the rapid purification and investigation of RNAs and RNA-protein complexes.

Walker SC, Scott FH, Srisawat C, Engelke DR.

Methods Mol Biol. 2008;488:23-40. doi: 10.1007/978-1-60327-475-3_3.


Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs.

Coughlin DJ, Pleiss JA, Walker SC, Whitworth GB, Engelke DR.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12218-23. doi: 10.1073/pnas.0801906105. Epub 2008 Aug 19.


Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes.

Haeusler RA, Pratt-Hyatt M, Good PD, Gipson TA, Engelke DR.

Genes Dev. 2008 Aug 15;22(16):2204-14. doi: 10.1101/gad.1675908.


Probing RNA structure with chemical reagents and enzymes.

Ziehler WA, Engelke DR.

Curr Protoc Nucleic Acid Chem. 2001 May;Chapter 6:Unit 6.1. doi: 10.1002/0471142700.nc0601s00.


Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture.

Aspinall TV, Gordon JM, Bennett HJ, Karahalios P, Bukowski JP, Walker SC, Engelke DR, Avis JM.

Nucleic Acids Res. 2007;35(19):6439-50. Epub 2007 Sep 19.


Protein kinase A regulates RNA polymerase III transcription through the nuclear localization of Maf1.

Moir RD, Lee J, Haeusler RA, Desai N, Engelke DR, Willis IM.

Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15044-9. Epub 2006 Sep 27.


Spatial organization of transcription by RNA polymerase III.

Haeusler RA, Engelke DR.

Nucleic Acids Res. 2006;34(17):4826-36. Epub 2006 Sep 13. Review.


Increased recombination between active tRNA genes.

Pratt-Hyatt MJ, Kapadia KM, Wilson TE, Engelke DR.

DNA Cell Biol. 2006 Jun;25(6):359-64.


Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP.

Xiao S, Hsieh J, Nugent RL, Coughlin DJ, Fierke CA, Engelke DR.

RNA. 2006 Jun;12(6):1023-37. Epub 2006 Apr 17.


Ribonuclease P: the evolution of an ancient RNA enzyme.

Walker SC, Engelke DR.

Crit Rev Biochem Mol Biol. 2006 Mar-Apr;41(2):77-102.


The RNA Ontology Consortium: an open invitation to the RNA community.

Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E.

RNA. 2006 Apr;12(4):533-41. Epub 2006 Feb 16.


Modified view of tRNA: stability amid sequence diversity.

Engelke DR, Hopper AK.

Mol Cell. 2006 Jan 20;21(2):144-5. Review.


Characterization of conserved sequence elements in eukaryotic RNase P RNA reveals roles in holoenzyme assembly and tRNA processing.

Xiao S, Day-Storms JJ, Srisawat C, Fierke CA, Engelke DR.

RNA. 2005 Jun;11(6):885-96. Epub 2005 May 4.


Silencing near tRNA genes requires nucleolar localization.

Wang L, Haeusler RA, Good PD, Thompson M, Nagar S, Engelke DR.

J Biol Chem. 2005 Mar 11;280(10):8637-9. Epub 2005 Jan 15.


Genome organization in three dimensions: thinking outside the line.

Haeusler RA, Engelke DR.

Cell Cycle. 2004 Mar;3(3):273-5. Epub 2004 Mar 1.


Nucleolar clustering of dispersed tRNA genes.

Thompson M, Haeusler RA, Good PD, Engelke DR.

Science. 2003 Nov 21;302(5649):1399-401.


Localized expression of small RNA inhibitors in human cells.

Paul CP, Good PD, Li SX, Kleihauer A, Rossi JJ, Engelke DR.

Mol Ther. 2003 Feb;7(2):237-47.


An active precursor in assembly of yeast nuclear ribonuclease P.

Srisawat C, Houser-Scott F, Bertrand E, Xiao S, Singer RH, Engelke DR.

RNA. 2002 Oct;8(10):1348-60.


Ribozymes: catalytic RNAs that cut things, make things, and do odd and useful jobs.

Walter NG, Engelke DR.

Biologist (London). 2002 Oct;49(5):199-203.


Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes.

Xiao S, Scott F, Fierke CA, Engelke DR.

Annu Rev Biochem. 2002;71:165-89. Epub 2001 Nov 9. Review.


Effective expression of small interfering RNA in human cells.

Paul CP, Good PD, Winer I, Engelke DR.

Nat Biotechnol. 2002 May;20(5):505-8.


Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P.

Houser-Scott F, Xiao S, Millikin CE, Zengel JM, Lindahl L, Engelke DR.

Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2684-9.


Saccharomyces cerevisiae nuclear ribonuclease P: structure and function.

Houser-Scott F, Ziehler WA, Engelke DR.

Methods Enzymol. 2001;342:101-17. No abstract available.


An essential protein-binding domain of nuclear RNase P RNA.

Ziehler WA, Morris J, Scott FH, Millikin C, Engelke DR.

RNA. 2001 Apr;7(4):565-75.

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