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Items: 16

1.

Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction.

de Bem Oliveira I, Resende MFR Jr, Ferrão LFV, Amadeu RR, Endelman JB, Kirst M, Coelho ASG, Munoz PR.

G3 (Bethesda). 2019 Apr 9;9(4):1189-1198. doi: 10.1534/g3.119.400059.

2.

Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato.

Endelman JB, Carley CAS, Bethke PC, Coombs JJ, Clough ME, da Silva WL, De Jong WS, Douches DS, Frederick CM, Haynes KG, Holm DG, Miller JC, Muñoz PR, Navarro FM, Novy RG, Palta JP, Porter GA, Rak KT, Sathuvalli VR, Thompson AL, Yencho GC.

Genetics. 2018 May;209(1):77-87. doi: 10.1534/genetics.118.300685. Epub 2018 Mar 7.

3.

Quantitative Trait Loci for Resistance to Common Scab and Cold-Induced Sweetening in Diploid Potato.

Braun SR, Endelman JB, Haynes KG, Jansky SH.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2016.10.0110.

4.

Automated tetraploid genotype calling by hierarchical clustering.

Schmitz Carley CA, Coombs JJ, Douches DS, Bethke PC, Palta JP, Novy RG, Endelman JB.

Theor Appl Genet. 2017 Apr;130(4):717-726. doi: 10.1007/s00122-016-2845-5. Epub 2017 Jan 9.

PMID:
28070610
5.

Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato.

Rosyara UR, De Jong WS, Douches DS, Endelman JB.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.08.0073.

6.

Genetic mapping with an inbred line-derived F2 population in potato.

Endelman JB, Jansky SH.

Theor Appl Genet. 2016 May;129(5):935-43. doi: 10.1007/s00122-016-2673-7. Epub 2016 Feb 5.

PMID:
26849236
7.

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies.

Muñoz-Amatriaín M, Cuesta-Marcos A, Endelman JB, Comadran J, Bonman JM, Bockelman HE, Chao S, Russell J, Waugh R, Hayes PM, Muehlbauer GJ.

PLoS One. 2014 Apr 14;9(4):e94688. doi: 10.1371/journal.pone.0094688. eCollection 2014.

8.

LPmerge: an R package for merging genetic maps by linear programming.

Endelman JB, Plomion C.

Bioinformatics. 2014 Jun 1;30(11):1623-4. doi: 10.1093/bioinformatics/btu091. Epub 2014 Feb 14.

PMID:
24532720
9.

Genomic predictability of interconnected biparental maize populations.

Riedelsheimer C, Endelman JB, Stange M, Sorrells ME, Jannink JL, Melchinger AE.

Genetics. 2013 Jun;194(2):493-503. doi: 10.1534/genetics.113.150227. Epub 2013 Mar 27.

10.

Shrinkage estimation of the realized relationship matrix.

Endelman JB, Jannink JL.

G3 (Bethesda). 2012 Nov;2(11):1405-13. doi: 10.1534/g3.112.004259. Epub 2012 Nov 1.

11.

New algorithm improves fine structure of the barley consensus SNP map.

Endelman JB.

BMC Genomics. 2011 Aug 10;12:407. doi: 10.1186/1471-2164-12-407.

12.

Structure-guided recombination creates an artificial family of cytochromes P450.

Otey CR, Landwehr M, Endelman JB, Hiraga K, Bloom JD, Arnold FH.

PLoS Biol. 2006 May;4(5):e112. Epub 2006 Apr 11.

13.

Site-directed protein recombination as a shortest-path problem.

Endelman JB, Silberg JJ, Wang ZG, Arnold FH.

Protein Eng Des Sel. 2004 Jul;17(7):589-94. Epub 2004 Aug 25.

PMID:
15331774
14.

SCHEMA-guided protein recombination.

Silberg JJ, Endelman JB, Arnold FH.

Methods Enzymol. 2004;388:35-42. No abstract available.

PMID:
15289059
15.

Functional evolution and structural conservation in chimeric cytochromes p450: calibrating a structure-guided approach.

Otey CR, Silberg JJ, Voigt CA, Endelman JB, Bandara G, Arnold FH.

Chem Biol. 2004 Mar;11(3):309-18.

16.

Library analysis of SCHEMA-guided protein recombination.

Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH.

Protein Sci. 2003 Aug;12(8):1686-93.

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