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Items: 1 to 50 of 91

1.

Predicting Local Inversions Using Rectangle Clustering and Representative Rectangle Prediction.

Zhu S, Emrich SJ, Chen DZ.

IEEE Trans Nanobioscience. 2019 Jul;18(3):316-323. doi: 10.1109/TNB.2019.2915060. Epub 2019 Jun 5.

PMID:
31180865
2.

A calcium/cAMP signaling loop at the ORAI1 mouth drives channel inactivation to shape NFAT induction.

Zhang X, Pathak T, Yoast R, Emrich S, Xin P, Nwokonko RM, Johnson M, Wu S, Delierneux C, Gueguinou M, Hempel N, Putney JW Jr, Gill DL, Trebak M.

Nat Commun. 2019 Apr 29;10(1):1971. doi: 10.1038/s41467-019-09593-0.

3.

MIReAD, a minimum information standard for reporting arthropod abundance data.

Rund SSC, Braak K, Cator L, Copas K, Emrich SJ, Giraldo-Calderón GI, Johansson MA, Heydari N, Hobern D, Kelly SA, Lawson D, Lord C, MacCallum RM, Roche DG, Ryan SJ, Schigel D, Vandegrift K, Watts M, Zaspel JM, Pawar S.

Sci Data. 2019 Apr 25;6(1):40. doi: 10.1038/s41597-019-0042-5.

4.

Cross-talk between N-terminal and C-terminal domains in stromal interaction molecule 2 (STIM2) determines enhanced STIM2 sensitivity.

Emrich SM, Yoast RE, Xin P, Zhang X, Pathak T, Nwokonko R, Gueguinou MF, Subedi KP, Zhou Y, Ambudkar IS, Hempel N, Machaca K, Gill DL, Trebak M.

J Biol Chem. 2019 Apr 19;294(16):6318-6332. doi: 10.1074/jbc.RA118.006801. Epub 2019 Mar 1.

PMID:
30824535
5.

Adjusted likelihood-ratio test for variants with unknown genotypes.

Nowling RJ, Emrich SJ.

J Bioinform Comput Biol. 2018 Oct;16(5):1840020. doi: 10.1142/S0219720018400206.

PMID:
30419783
6.

Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda.

Wiltshire RM, Bergey CM, Kayondo JK, Birungi J, Mukwaya LG, Emrich SJ, Besansky NJ, Collins FH.

Malar J. 2018 Aug 6;17(1):285. doi: 10.1186/s12936-018-2432-0.

7.

A daytime nap enhances visual working memory performance and alters event-related delay activity.

MacDonald KJ, Lockhart HA, Storace AC, Emrich SM, Cote KA.

Cogn Affect Behav Neurosci. 2018 Dec;18(6):1105-1120. doi: 10.3758/s13415-018-0625-1.

PMID:
30051361
8.

HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning.

Choudhury O, Chakrabarty A, Emrich SJ.

Sci Rep. 2018 Jul 2;8(1):9936. doi: 10.1038/s41598-018-28364-3.

9.

Activation of endothelial cells by extracellular vesicles derived from Mycobacterium tuberculosis infected macrophages or mice.

Li L, Cheng Y, Emrich S, Schorey J.

PLoS One. 2018 May 31;13(5):e0198337. doi: 10.1371/journal.pone.0198337. eCollection 2018.

10.

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling.

Ryan SF, Deines JM, Scriber JM, Pfrender ME, Jones SE, Emrich SJ, Hellmann JJ.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2284-E2291. doi: 10.1073/pnas.1714950115. Epub 2018 Feb 20.

11.

Encoding differences affect the number and precision of own-race versus other-race faces stored in visual working memory.

Zhou X, Mondloch CJ, Emrich SM.

Atten Percept Psychophys. 2018 Apr;80(3):702-712. doi: 10.3758/s13414-017-1467-6.

12.

Single molecule sequencing-guided scaffolding and correction of draft assemblies.

Zhu S, Chen DZ, Emrich SJ.

BMC Genomics. 2017 Dec 6;18(Suppl 10):879. doi: 10.1186/s12864-017-4271-8.

13.

ERP evidence for temporal independence of set size and object updating in object substitution masking.

Salahub CM, Emrich SM.

Atten Percept Psychophys. 2018 Feb;80(2):387-401. doi: 10.3758/s13414-017-1459-6.

PMID:
29204864
14.

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

Faisal FE, Newaz K, Chaney JL, Li J, Emrich SJ, Clark PL, Milenković T.

Sci Rep. 2017 Nov 2;7(1):14890. doi: 10.1038/s41598-017-14411-y.

15.

%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding.

Rodriguez A, Wright G, Emrich S, Clark PL.

Protein Sci. 2018 Jan;27(1):356-362. doi: 10.1002/pro.3336. Epub 2017 Nov 21.

16.

More than a filter: Feature-based attention regulates the distribution of visual working memory resources.

Dube B, Emrich SM, Al-Aidroos N.

J Exp Psychol Hum Percept Perform. 2017 Oct;43(10):1843-1854. doi: 10.1037/xhp0000428.

PMID:
28967787
17.

Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster.

Horsman ME, Marous DR, Li R, Oliver RA, Byun B, Emrich SJ, Boggess B, Townsend CA, Mobashery S.

ACS Chem Biol. 2017 Oct 20;12(10):2552-2557. doi: 10.1021/acschembio.7b00687. Epub 2017 Sep 26.

18.

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, Di Stefano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TAL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 Aug 23;8:16153. doi: 10.1038/ncomms16153.

19.

RNA-seq implicates deregulation of the immune system in the pathogenesis of diverticulitis.

Schieffer KM, Choi CS, Emrich S, Harris L, Deiling S, Karamchandani DM, Salzberg A, Kawasawa YI, Yochum GS, Koltun WA.

Am J Physiol Gastrointest Liver Physiol. 2017 Sep 1;313(3):G277-G284. doi: 10.1152/ajpgi.00136.2017. Epub 2017 Jun 15.

20.

Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation.

Choudhury O, Chakrabarty A, Emrich SJ.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1107-1116. doi: 10.1109/TCBB.2017.2708701. Epub 2017 May 26.

PMID:
28574365
21.

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra.

Konar A, Choudhury O, Bullis R, Fiedler L, Kruser JM, Stephens MT, Gailing O, Schlarbaum S, Coggeshall MV, Staton ME, Carlson JE, Emrich S, Romero-Severson J.

BMC Genomics. 2017 May 30;18(1):417. doi: 10.1186/s12864-017-3765-8.

22.

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, di Stephano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 May 16;8:15451. doi: 10.1038/ncomms15451. Erratum in: Nat Commun. 2017 Aug 23;8:16153.

23.

Widespread position-specific conservation of synonymous rare codons within coding sequences.

Chaney JL, Steele A, Carmichael R, Rodriguez A, Specht AT, Ngo K, Li J, Emrich S, Clark PL.

PLoS Comput Biol. 2017 May 5;13(5):e1005531. doi: 10.1371/journal.pcbi.1005531. eCollection 2017 May.

24.

Attention mediates the flexible allocation of visual working memory resources.

Emrich SM, Lockhart HA, Al-Aidroos N.

J Exp Psychol Hum Percept Perform. 2017 Jul;43(7):1454-1465. doi: 10.1037/xhp0000398. Epub 2017 Apr 3.

PMID:
28368161
25.

Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing.

Love RR, Steele AM, Coulibaly MB, Traore SF, Emrich SJ, Fontaine MC, Besansky NJ.

Mol Ecol. 2016 Dec;25(23):5889-5906. doi: 10.1111/mec.13888. Epub 2016 Nov 9.

26.

Within-Category Decoding of Information in Different Attentional States in Short-Term Memory.

LaRocque JJ, Riggall AC, Emrich SM, Postle BR.

Cereb Cortex. 2017 Oct 1;27(10):4881-4890. doi: 10.1093/cercor/bhw283.

27.

Comparing the Effects of 10-Hz Repetitive TMS on Tasks of Visual STM and Attention.

Emrich SM, Johnson JS, Sutterer DW, Postle BR.

J Cogn Neurosci. 2017 Feb;29(2):286-297. doi: 10.1162/jocn_a_01043. Epub 2016 Sep 14.

28.

Prediction of fine-tuned promoter activity from DNA sequence.

Siwo G, Rider A, Tan A, Pinapati R, Emrich S, Chawla N, Ferdig M.

F1000Res. 2016 Feb 11;5:158. doi: 10.12688/f1000research.7485.1. eCollection 2016.

29.

Tuning perception: Visual working memory biases the quality of visual awareness.

Salahub CM, Emrich SM.

Psychon Bull Rev. 2016 Dec;23(6):1854-1859.

PMID:
27206649
30.

High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti.

Behura SK, Sarro J, Li P, Mysore K, Severson DW, Emrich SJ, Duman-Scheel M.

BMC Genomics. 2016 May 10;17:341. doi: 10.1186/s12864-016-2468-x.

31.

Visual working memory simultaneously guides facilitation and inhibition during visual search.

Dube B, Basciano A, Emrich SM, Al-Aidroos N.

Atten Percept Psychophys. 2016 Jul;78(5):1232-44. doi: 10.3758/s13414-016-1105-8.

PMID:
27055458
32.

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes.

Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, Nolan T, Radune D, Sharakhova MV, Steele A, Timoshevskiy VA, Windbichler N, Zhang S, Hahn MW, Phillippy AM, Emrich SJ, Sharakhov IV, Tu ZJ, Besansky NJ.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):E2114-23. doi: 10.1073/pnas.1525164113. Epub 2016 Mar 29.

33.

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection.

Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JM, Sorgine MH, Waterhouse RM, Montague MJ, Abad-Franch F, Alves-Bezerra M, Amaral LR, Araujo HM, Araujo RN, Aravind L, Atella GC, Azambuja P, Berni M, Bittencourt-Cunha PR, Braz GR, Calderón-Fernández G, Carareto CM, Christensen MB, Costa IR, Costa SG, Dansa M, Daumas-Filho CR, De-Paula IF, Dias FA, Dimopoulos G, Emrich SJ, Esponda-Behrens N, Fampa P, Fernandez-Medina RD, da Fonseca RN, Fontenele M, Fronick C, Fulton LA, Gandara AC, Garcia ES, Genta FA, Giraldo-Calderón GI, Gomes B, Gondim KC, Granzotto A, Guarneri AA, Guigó R, Harry M, Hughes DS, Jablonka W, Jacquin-Joly E, Juárez MP, Koerich LB, Lange AB, Latorre-Estivalis JM, Lavore A, Lawrence GG, Lazoski C, Lazzari CR, Lopes RR, Lorenzo MG, Lugon MD, Majerowicz D, Marcet PL, Mariotti M, Masuda H, Megy K, Melo AC, Missirlis F, Mota T, Noriega FG, Nouzova M, Nunes RD, Oliveira RL, Oliveira-Silveira G, Ons S, Orchard I, Pagola L, Paiva-Silva GO, Pascual A, Pavan MG, Pedrini N, Peixoto AA, Pereira MH, Pike A, Polycarpo C, Prosdocimi F, Ribeiro-Rodrigues R, Robertson HM, Salerno AP, Salmon D, Santesmasses D, Schama R, Seabra-Junior ES, Silva-Cardoso L, Silva-Neto MA, Souza-Gomes M, Sterkel M, Taracena ML, Tojo M, Tu ZJ, Tubio JM, Ursic-Bedoya R, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL.

Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):14936-41. doi: 10.1073/pnas.1506226112. Epub 2015 Nov 16. Erratum in: Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):E1415-6. Lange, Angela B [added]; Orchard, Ian [added].

34.

Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow.

Egan SP, Ragland GJ, Assour L, Powell TH, Hood GR, Emrich S, Nosil P, Feder JL.

Ecol Lett. 2015 Aug;18(8):817-25. doi: 10.1111/ele.12460. Epub 2015 Jun 15.

35.

Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations.

Ramalho-Ortigão M, Coutinho-Abreu IV, Balbino VQ, Figueiredo CA Jr, Mukbel R, Dayem H, Hanafi HA, El-Hossary SS, Fawaz Eel-D, Abo-Shehada M, Hoel DF, Stayback G, Wadsworth M, Shoue DA, Abrudan J, Lobo NF, Mahon AR, Emrich SJ, Kamhawi S, Collins FH, McDowell MA.

Parasit Vectors. 2015 May 29;8:298. doi: 10.1186/s13071-015-0914-2.

36.

A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria.

Mbengue A, Bhattacharjee S, Pandharkar T, Liu H, Estiu G, Stahelin RV, Rizk SS, Njimoh DL, Ryan Y, Chotivanich K, Nguon C, Ghorbal M, Lopez-Rubio JJ, Pfrender M, Emrich S, Mohandas N, Dondorp AM, Wiest O, Haldar K.

Nature. 2015 Apr 30;520(7549):683-7. doi: 10.1038/nature14412. Epub 2015 Apr 15.

37.

Re-evaluating the relationships among filtering activity, unnecessary storage, and visual working memory capacity.

Emrich SM, Busseri MA.

Cogn Affect Behav Neurosci. 2015 Sep;15(3):589-97. doi: 10.3758/s13415-015-0341-z.

PMID:
25690338
38.

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.

Warren AS, Aurrecoechea C, Brunk B, Desai P, Emrich S, Giraldo-Calderón GI, Harb O, Hix D, Lawson D, Machi D, Mao C, McClelland M, Nordberg E, Shukla M, Vosshall LB, Wattam AR, Will R, Yoo HS, Sobral B.

Bioinformatics. 2015 May 1;31(9):1496-8. doi: 10.1093/bioinformatics/btv002. Epub 2015 Jan 7.

39.

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ.

Science. 2015 Jan 2;347(6217):1258522. doi: 10.1126/science.1258522. Epub 2014 Nov 27.

40.

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.

Giraldo-Calderón GI, Emrich SJ, MacCallum RM, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S; VectorBase Consortium, Madey G, Collins FH, Lawson D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D707-13. doi: 10.1093/nar/gku1117. Epub 2014 Dec 15.

41.

The short- and long-term fates of memory items retained outside the focus of attention.

LaRocque JJ, Eichenbaum AS, Starrett MJ, Rose NS, Emrich SM, Postle BR.

Mem Cognit. 2015 Apr;43(3):453-68. doi: 10.3758/s13421-014-0486-y.

42.

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics.

Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, Slotman MA, Emrich SJ, Hahn MW, Besansky NJ.

Science. 2015 Jan 2;347(6217):1258524. doi: 10.1126/science.1258524. Epub 2014 Nov 27.

43.

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi.

Jiang X, Peery A, Hall AB, Sharma A, Chen XG, Waterhouse RM, Komissarov A, Riehle MM, Shouche Y, Sharakhova MV, Lawson D, Pakpour N, Arensburger P, Davidson VL, Eiglmeier K, Emrich S, George P, Kennedy RC, Mane SP, Maslen G, Oringanje C, Qi Y, Settlage R, Tojo M, Tubio JM, Unger MF, Wang B, Vernick KD, Ribeiro JM, James AA, Michel K, Riehle MA, Luckhart S, Sharakhov IV, Tu Z.

Genome Biol. 2014 Sep 23;15(9):459. doi: 10.1186/s13059-014-0459-2.

44.

Networks' Characteristics Matter for Systems Biology.

Rider AK, Milenković T, Siwo GH, Pinapati RS, Emrich SJ, Ferdig MT, Chawla NV.

Netw Sci (Camb Univ Press). 2014 Aug;2(2):139-161. Epub 2014 Sep 3.

45.

Mapping genomic features to functional traits through microbial whole genome sequences.

Zhang W, Zeng E, Liu D, Jones SE, Emrich S.

Int J Bioinform Res Appl. 2014;10(4-5):461-78. doi: 10.1504/IJBRA.2014.062995.

PMID:
24989863
46.

Scaling up genome annotation using MAKER and work queue.

Thrasher A, Musgrave Z, Kachmarck B, Thain D, Emrich S.

Int J Bioinform Res Appl. 2014;10(4-5):447-60. doi: 10.1504/IJBRA.2014.062994.

PMID:
24989862
47.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

48.

A supervised learning approach to the ensemble clustering of genes.

Rider AK, Siwo G, Emrich SJ, Ferdig MT, Chawla NV.

Int J Data Min Bioinform. 2014;9(2):199-219.

PMID:
24864378
49.

Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world.

O'Neil ST, Dzurisin JD, Williams CM, Lobo NF, Higgins JK, Deines JM, Carmichael RD, Zeng E, Tan JC, Wu GC, Emrich SJ, Hellmann JJ.

Mol Ecol. 2014 Jun;23(11):2686-98. doi: 10.1111/mec.12773.

PMID:
24766086
50.

Genetic characterization of a novel Iflavirus associated with vomiting disease in the Chinese oak silkmoth Antheraea pernyi.

Geng P, Li W, Lin L, de Miranda JR, Emrich S, An L, Terenius O.

PLoS One. 2014 Mar 17;9(3):e92107. doi: 10.1371/journal.pone.0092107. eCollection 2014.

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