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Items: 40

1.

Spatial self-organization resolves conflicts between individuality and collective migration.

Fu X, Kato S, Long J, Mattingly HH, He C, Vural DC, Zucker SW, Emonet T.

Nat Commun. 2018 Jun 5;9(1):2177. doi: 10.1038/s41467-018-04539-4.

2.

Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis.

Waite AJ, Frankel NW, Emonet T.

Annu Rev Biophys. 2018 May 20;47:595-616. doi: 10.1146/annurev-biophys-062215-010954. Epub 2018 Apr 4.

PMID:
29618219
3.

Non-genetic diversity modulates population performance.

Waite AJ, Frankel NW, Dufour YS, Johnston JF, Long J, Emonet T.

Mol Syst Biol. 2018 Jan 10;14(1):e8149. doi: 10.15252/msb.20178149. No abstract available.

4.

Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET.

Keegstra JM, Kamino K, Anquez F, Lazova MD, Emonet T, Shimizu TS.

Elife. 2017 Dec 12;6. pii: e27455. doi: 10.7554/eLife.27455.

5.

Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators.

Nesper J, Hug I, Kato S, Hee CS, Habazettl JM, Manfredi P, Grzesiek S, Schirmer T, Emonet T, Jenal U.

Elife. 2017 Nov 1;6. pii: e28842. doi: 10.7554/eLife.28842.

6.

Patterned Disordered Cell Motion Ensures Vertebral Column Symmetry.

Das D, Chatti V, Emonet T, Holley SA.

Dev Cell. 2017 Jul 24;42(2):170-180.e5. doi: 10.1016/j.devcel.2017.06.020.

PMID:
28743003
7.

Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli.

Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T.

Elife. 2017 Jun 28;6. pii: e27670. doi: 10.7554/eLife.27670.

8.

Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation.

Long J, Zucker SW, Emonet T.

PLoS Comput Biol. 2017 Mar 6;13(3):e1005429. doi: 10.1371/journal.pcbi.1005429. eCollection 2017 Mar.

9.

Non-genetic diversity modulates population performance.

Waite AJ, Frankel NW, Dufour YS, Johnston JF, Long J, Emonet T.

Mol Syst Biol. 2016 Dec 19;12(12):895. doi: 10.15252/msb.20167044. Erratum in: Mol Syst Biol. 2018 Jan 10;14 (1):e8149.

10.

Direct Correlation between Motile Behavior and Protein Abundance in Single Cells.

Dufour YS, Gillet S, Frankel NW, Weibel DB, Emonet T.

PLoS Comput Biol. 2016 Sep 6;12(9):e1005041. doi: 10.1371/journal.pcbi.1005041. eCollection 2016 Sep. Erratum in: PLoS Comput Biol. 2016 Sep 30;12(9):e1005149.

11.

Presynaptic GABA Receptors Mediate Temporal Contrast Enhancement in Drosophila Olfactory Sensory Neurons and Modulate Odor-Driven Behavioral Kinetics.

Raccuglia D, McCurdy LY, Demir M, Gorur-Shandilya S, Kunst M, Emonet T, Nitabach MN.

eNeuro. 2016 Aug 23;3(4). pii: ENEURO.0080-16.2016. doi: 10.1523/ENEURO.0080-16.2016. eCollection 2016 Jul-Aug.

12.

Adaptability of non-genetic diversity in bacterial chemotaxis.

Frankel NW, Pontius W, Dufour YS, Long J, Hernandez-Nunez L, Emonet T.

Elife. 2014 Oct 3;3. doi: 10.7554/eLife.03526.

13.

Limits of feedback control in bacterial chemotaxis.

Dufour YS, Fu X, Hernandez-Nunez L, Emonet T.

PLoS Comput Biol. 2014 Jun 26;10(6):e1003694. doi: 10.1371/journal.pcbi.1003694. eCollection 2014 Jun. Erratum in: PLoS Comput Biol. 2014 Dec;10(12):e1004069.

14.

Adaptation dynamics in densely clustered chemoreceptors.

Pontius W, Sneddon MW, Emonet T.

PLoS Comput Biol. 2013;9(9):e1003230. doi: 10.1371/journal.pcbi.1003230. Epub 2013 Sep 19.

15.

Cell-fibronectin interactions propel vertebrate trunk elongation via tissue mechanics.

Dray N, Lawton A, Nandi A, J├╝lich D, Emonet T, Holley SA.

Curr Biol. 2013 Jul 22;23(14):1335-41. doi: 10.1016/j.cub.2013.05.052. Epub 2013 Jun 27.

16.

Functional diversity among sensory receptors in a Drosophila olfactory circuit.

Mathew D, Martelli C, Kelley-Swift E, Brusalis C, Gershow M, Samuel AD, Emonet T, Carlson JR.

Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):E2134-43. doi: 10.1073/pnas.1306976110. Epub 2013 May 20.

17.

Intensity invariant dynamics and odor-specific latencies in olfactory receptor neuron response.

Martelli C, Carlson JR, Emonet T.

J Neurosci. 2013 Apr 10;33(15):6285-97. doi: 10.1523/JNEUROSCI.0426-12.2013.

18.

Regulated tissue fluidity steers zebrafish body elongation.

Lawton AK, Nandi A, Stulberg MJ, Dray N, Sneddon MW, Pontius W, Emonet T, Holley SA.

Development. 2013 Feb 1;140(3):573-82. doi: 10.1242/dev.090381.

19.

Modeling cellular signaling: taking space into the computation.

Sneddon MW, Emonet T.

Nat Methods. 2012 Feb 28;9(3):239-42. doi: 10.1038/nmeth.1900. No abstract available.

20.

The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub.

Trofka A, Schwendinger-Schreck J, Brend T, Pontius W, Emonet T, Holley SA.

Development. 2012 Mar;139(5):940-7. doi: 10.1242/dev.073544. Epub 2012 Jan 25.

21.

Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria.

Sneddon MW, Pontius W, Emonet T.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):805-10. doi: 10.1073/pnas.1113706109. Epub 2011 Dec 27.

22.

Thermal robustness: lessons from bacterial chemotaxis.

Dufour YS, Sneddon MW, Emonet T.

Curr Biol. 2011 Jun 21;21(12):R465-8. doi: 10.1016/j.cub.2011.05.014.

23.

Guidelines for visualizing and annotating rule-based models.

Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS.

Mol Biosyst. 2011 Oct;7(10):2779-95. doi: 10.1039/c1mb05077j. Epub 2011 Jun 7.

24.

High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics.

Sliusarenko O, Heinritz J, Emonet T, Jacobs-Wagner C.

Mol Microbiol. 2011 May;80(3):612-27. doi: 10.1111/j.1365-2958.2011.07579.x. Epub 2011 Mar 17.

25.

Temporal coding of odor mixtures in an olfactory receptor neuron.

Su CY, Martelli C, Emonet T, Carlson JR.

Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5075-80. doi: 10.1073/pnas.1100369108. Epub 2011 Mar 7.

26.

Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.

Sneddon MW, Faeder JR, Emonet T.

Nat Methods. 2011 Feb;8(2):177-83. doi: 10.1038/nmeth.1546. Epub 2010 Dec 26.

PMID:
21186362
27.

Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response.

Feinerman O, Jentsch G, Tkach KE, Coward JW, Hathorn MM, Sneddon MW, Emonet T, Smith KA, Altan-Bonnet G.

Mol Syst Biol. 2010 Nov 30;6:437. doi: 10.1038/msb.2010.90.

28.

Interdependence of behavioural variability and response to small stimuli in bacteria.

Park H, Pontius W, Guet CC, Marko JF, Emonet T, Cluzel P.

Nature. 2010 Dec 9;468(7325):819-23. doi: 10.1038/nature09551. Epub 2010 Nov 14.

29.

Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay.

Park H, Guet CC, Emonet T, Cluzel P.

Curr Microbiol. 2011 Mar;62(3):764-9. doi: 10.1007/s00284-010-9778-z. Epub 2010 Oct 24.

30.

Spatial organization of the flow of genetic information in bacteria.

Montero Llopis P, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, Emonet T, Jacobs-Wagner C.

Nature. 2010 Jul 1;466(7302):77-81. doi: 10.1038/nature09152. Epub 2010 Jun 20.

31.

Processivity of peptidoglycan synthesis provides a built-in mechanism for the robustness of straight-rod cell morphology.

Sliusarenko O, Cabeen MT, Wolgemuth CW, Jacobs-Wagner C, Emonet T.

Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10086-91. doi: 10.1073/pnas.1000737107. Epub 2010 May 17.

32.

Understanding modularity in molecular networks requires dynamics.

Alexander RP, Kim PM, Emonet T, Gerstein MB.

Sci Signal. 2009 Jul 28;2(81):pe44. doi: 10.1126/scisignal.281pe44.

33.

RodZ, a component of the bacterial core morphogenic apparatus.

Alyahya SA, Alexander R, Costa T, Henriques AO, Emonet T, Jacobs-Wagner C.

Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):1239-44. doi: 10.1073/pnas.0810794106. Epub 2009 Jan 21.

34.

Minimally invasive determination of mRNA concentration in single living bacteria.

Guet CC, Bruneaux L, Min TL, Siegal-Gaskins D, Figueroa I, Emonet T, Cluzel P.

Nucleic Acids Res. 2008 Jul;36(12):e73. doi: 10.1093/nar/gkn329. Epub 2008 May 30.

35.

Relationship between cellular response and behavioral variability in bacterial chemotaxis.

Emonet T, Cluzel P.

Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3304-9. doi: 10.1073/pnas.0705463105. Epub 2008 Feb 25.

36.

Hidden stochastic nature of a single bacterial motor.

Korobkova EA, Emonet T, Park H, Cluzel P.

Phys Rev Lett. 2006 Feb 10;96(5):058105. Epub 2006 Feb 7.

PMID:
16486999
37.

Dynamical determinants of drug-inducible gene expression in a single bacterium.

Le TT, Emonet T, Harlepp S, Guet CC, Cluzel P.

Biophys J. 2006 May 1;90(9):3315-21. Epub 2006 Feb 3.

38.

Real-time RNA profiling within a single bacterium.

Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P.

Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9160-4. Epub 2005 Jun 20.

39.

AgentCell: a digital single-cell assay for bacterial chemotaxis.

Emonet T, Macal CM, North MJ, Wickersham CE, Cluzel P.

Bioinformatics. 2005 Jun 1;21(11):2714-21. Epub 2005 Mar 17.

PMID:
15774553
40.

From molecular noise to behavioural variability in a single bacterium.

Korobkova E, Emonet T, Vilar JM, Shimizu TS, Cluzel P.

Nature. 2004 Apr 1;428(6982):574-8.

PMID:
15058306

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