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1.

Gene Expression Profiling in Blood and Affected Muscle Tissues Reveals Differential Activation Pathways in Patients with New-onset Juvenile and Adult Dermatomyositis.

López De Padilla CM, Crowson CS, Hein MS, Pendegraft RS, Strausbauch MA, Niewold TB, Ernste FC, Peterson E, Baechler EC, Reed AM.

J Rheumatol. 2017 Jan;44(1):117-124. doi: 10.3899/jrheum.160293. Epub 2016 Nov 1.

2.

High-Resolution Analysis of Antibodies to Post-Translational Modifications Using Peptide Nanosensor Microarrays.

Lee JR, Haddon DJ, Gupta N, Price JV, Credo GM, Diep VK, Kim K, Hall DA, Baechler EC, Petri M, Varma M, Utz PJ, Wang SX.

ACS Nano. 2016 Dec 27;10(12):10652-10660. doi: 10.1021/acsnano.6b03786. Epub 2016 Sep 20.

3.

Multiplex giant magnetoresistive biosensor microarrays identify interferon-associated autoantibodies in systemic lupus erythematosus.

Lee JR, Haddon DJ, Wand HE, Price JV, Diep VK, Hall DA, Petri M, Baechler EC, Balboni IM, Utz PJ, Wang SX.

Sci Rep. 2016 Jun 9;6:27623. doi: 10.1038/srep27623.

4.

Mapping epitopes of U1-70K autoantibodies at single-amino acid resolution.

Haddon DJ, Jarrell JA, Diep VK, Wand HE, Price JV, Tangsombatvisit S, Credo GM, Mackey S, Dekker CL, Baechler EC, Liu CL, Varma M, Utz PJ.

Autoimmunity. 2015;48(8):513-23. doi: 10.3109/08916934.2015.1077233. Epub 2015 Aug 31.

5.

PTPN22 Variant R620W Is Associated With Reduced Toll-like Receptor 7-Induced Type I Interferon in Systemic Lupus Erythematosus.

Wang Y, Ewart D, Crabtree JN, Yamamoto A, Baechler EC, Fazeli P, Peterson EJ.

Arthritis Rheumatol. 2015 Sep;67(9):2403-14. doi: 10.1002/art.39211.

6.

Adipokine gene expression in peripheral blood of adult and juvenile dermatomyositis patients and their relation to clinical parameters and disease activity measures.

Olazagasti JM, Hein M, Crowson CS, de Padilla CL, Peterson E, Baechler EC, Reed AM.

J Inflamm (Lond). 2015 Apr 9;12:29. doi: 10.1186/s12950-015-0075-2. eCollection 2015.

7.

Using gene expression to improve the power of genome-wide association analysis.

Ho YY, Baechler EC, Ortmann W, Behrens TW, Graham RR, Bhangale TR, Pan W.

Hum Hered. 2014;78(2):94-103. doi: 10.1159/000362837. Epub 2014 Jul 30.

8.

Primary EBV infection induces an expression profile distinct from other viruses but similar to hemophagocytic syndromes.

Dunmire SK, Odumade OA, Porter JL, Reyes-Genere J, Schmeling DO, Bilgic H, Fan D, Baechler EC, Balfour HH Jr, Hogquist KA.

PLoS One. 2014 Jan 17;9(1):e85422. doi: 10.1371/journal.pone.0085422. eCollection 2014.

9.

Protein microarray analysis reveals BAFF-binding autoantibodies in systemic lupus erythematosus.

Price JV, Haddon DJ, Kemmer D, Delepine G, Mandelbaum G, Jarrell JA, Gupta R, Balboni I, Chakravarty EF, Sokolove J, Shum AK, Anderson MS, Cheng MH, Robinson WH, Browne SK, Holland SM, Baechler EC, Utz PJ.

J Clin Invest. 2013 Dec;123(12):5135-45. doi: 10.1172/JCI70231. Epub 2013 Nov 25.

10.

BAFF expression correlates with idiopathic inflammatory myopathy disease activity measures and autoantibodies.

López De Padilla CM, McNallan KT, Crowson CS, Bilgic H, Bram RJ, Hein MS, Ytterberg SR, Amin S, Peterson EJ, Baechler EC, Reed AM.

J Rheumatol. 2013 Mar;40(3):294-302. doi: 10.3899/jrheum.120555. Epub 2013 Jan 15.

PMID:
23322463
11.

Increased expression of ADAMTS13 mRNA correlates with ischemic cerebrovascular disease in systemic lupus erythematosus patients.

López De Padilla CM, Hein MS, Crowson CS, Choo CS, Green AB, Petri M, Bilgic H, Baechler EC, Reed AM.

SAGE Open Med. 2013 Nov 29;1:2050312113514404. doi: 10.1177/2050312113514404. eCollection 2013.

12.

On silico peptide microarrays for high-resolution mapping of antibody epitopes and diverse protein-protein interactions.

Price JV, Tangsombatvisit S, Xu G, Yu J, Levy D, Baechler EC, Gozani O, Varma M, Utz PJ, Liu CL.

Nat Med. 2012 Sep;18(9):1434-40.

13.

Type I interferon pathway in adult and juvenile dermatomyositis.

Baechler EC, Bilgic H, Reed AM.

Arthritis Res Ther. 2011;13(6):249. doi: 10.1186/ar3531. Epub 2011 Dec 22. Review.

14.

Ebf1 or Pax5 haploinsufficiency synergizes with STAT5 activation to initiate acute lymphoblastic leukemia.

Heltemes-Harris LM, Willette MJ, Ramsey LB, Qiu YH, Neeley ES, Zhang N, Thomas DA, Koeuth T, Baechler EC, Kornblau SM, Farrar MA.

J Exp Med. 2011 Jun 6;208(6):1135-49. doi: 10.1084/jem.20101947. Epub 2011 May 23.

15.

Interleukin-6 and type I interferon-regulated genes and chemokines mark disease activity in dermatomyositis.

Bilgic H, Ytterberg SR, Amin S, McNallan KT, Wilson JC, Koeuth T, Ellingson S, Newman B, Bauer JW, Peterson EJ, Baechler EC, Reed AM.

Arthritis Rheum. 2009 Nov;60(11):3436-46. doi: 10.1002/art.24936.

16.

A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.

Gateva V, Sandling JK, Hom G, Taylor KE, Chung SA, Sun X, Ortmann W, Kosoy R, Ferreira RC, Nordmark G, Gunnarsson I, Svenungsson E, Padyukov L, Sturfelt G, Jönsen A, Bengtsson AA, Rantapää-Dahlqvist S, Baechler EC, Brown EE, Alarcón GS, Edberg JC, Ramsey-Goldman R, McGwin G Jr, Reveille JD, Vilá LM, Kimberly RP, Manzi S, Petri MA, Lee A, Gregersen PK, Seldin MF, Rönnblom L, Criswell LA, Syvänen AC, Behrens TW, Graham RR.

Nat Genet. 2009 Nov;41(11):1228-33. doi: 10.1038/ng.468. Epub 2009 Oct 18.

17.

Interferon-regulated chemokines as biomarkers of systemic lupus erythematosus disease activity: a validation study.

Bauer JW, Petri M, Batliwalla FM, Koeuth T, Wilson J, Slattery C, Panoskaltsis-Mortari A, Gregersen PK, Behrens TW, Baechler EC.

Arthritis Rheum. 2009 Oct;60(10):3098-107. doi: 10.1002/art.24803.

18.

Gene-expression profiling in rheumatic disease: tools and therapeutic potential.

Bauer JW, Bilgic H, Baechler EC.

Nat Rev Rheumatol. 2009 May;5(5):257-65. doi: 10.1038/nrrheum.2009.50. Review.

PMID:
19412192
19.

Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.

International Consortium for Systemic Lupus Erythematosus Genetics (SLEGEN), Harley JB, Alarcón-Riquelme ME, Criswell LA, Jacob CO, Kimberly RP, Moser KL, Tsao BP, Vyse TJ, Langefeld CD, Nath SK, Guthridge JM, Cobb BL, Mirel DB, Marion MC, Williams AH, Divers J, Wang W, Frank SG, Namjou B, Gabriel SB, Lee AT, Gregersen PK, Behrens TW, Taylor KE, Fernando M, Zidovetzki R, Gaffney PM, Edberg JC, Rioux JD, Ojwang JO, James JA, Merrill JT, Gilkeson GS, Seldin MF, Yin H, Baechler EC, Li QZ, Wakeland EK, Bruner GR, Kaufman KM, Kelly JA.

Nat Genet. 2008 Feb;40(2):204-10. doi: 10.1038/ng.81. Epub 2008 Jan 20.

20.

Defining a new molecular basis of systemic lupus erythematosus through transcriptional profiling.

Gaffney PM, Moser KL, Baechler EC.

Expert Rev Clin Immunol. 2007 Nov;3(6):913-23. doi: 10.1586/1744666X.3.6.913.

PMID:
20477140

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