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Items: 29

1.

A Diverse Lipid Antigen-Specific TCR Repertoire Is Clonally Expanded during Active Tuberculosis.

DeWitt WS, Yu KKQ, Wilburn DB, Sherwood A, Vignali M, Day CL, Scriba TJ, Robins HS, Swanson WJ, Emerson RO, Bradley PH, Seshadri C.

J Immunol. 2018 Jun 18. pii: ji1800186. doi: 10.4049/jimmunol.1800186. [Epub ahead of print]

PMID:
29914888
2.

CD1b Tetramers Identify T Cells that Recognize Natural and Synthetic Diacylated Sulfoglycolipids from Mycobacterium tuberculosis.

James CA, Yu KKQ, Gilleron M, Prandi J, Yedulla VR, Moleda ZZ, Diamanti E, Khan M, Aggarwal VK, Reijneveld JF, Reinink P, Lenz S, Emerson RO, Scriba TJ, Souter MNT, Godfrey DI, Pellicci DG, Moody DB, Minnaard AJ, Seshadri C, Van Rhijn I.

Cell Chem Biol. 2018 Apr 19;25(4):392-402.e14. doi: 10.1016/j.chembiol.2018.01.006. Epub 2018 Feb 1.

PMID:
29398561
3.

Radiotherapy and CTLA-4 Blockade Shape the TCR Repertoire of Tumor-Infiltrating T Cells.

Rudqvist NP, Pilones KA, Lhuillier C, Wennerberg E, Sidhom JW, Emerson RO, Robins HS, Schneck J, Formenti SC, Demaria S.

Cancer Immunol Res. 2018 Feb;6(2):139-150. doi: 10.1158/2326-6066.CIR-17-0134. Epub 2017 Nov 27.

PMID:
29180535
4.

Staged development of long-lived T-cell receptor αβ TH17 resident memory T-cell population to Candida albicans after skin infection.

Park CO, Fu X, Jiang X, Pan Y, Teague JE, Collins N, Tian T, O'Malley JT, Emerson RO, Kim JH, Jung Y, Watanabe R, Fuhlbrigge RC, Carbone FR, Gebhardt T, Clark RA, Lin CP, Kupper TS.

J Allergy Clin Immunol. 2017 Nov 9. pii: S0091-6749(17)31737-2. doi: 10.1016/j.jaci.2017.09.042. [Epub ahead of print]

PMID:
29128674
5.

Nonlesional atopic dermatitis skin shares similar T-cell clones with lesional tissues.

Brunner PM, Emerson RO, Tipton C, Garcet S, Khattri S, Coats I, Krueger JG, Guttman-Yassky E.

Allergy. 2017 Dec;72(12):2017-2025. doi: 10.1111/all.13223. Epub 2017 Jun 28.

PMID:
28599078
6.

Fractionated Radiation Therapy Stimulates Antitumor Immunity Mediated by Both Resident and Infiltrating Polyclonal T-cell Populations when Combined with PD-1 Blockade.

Dovedi SJ, Cheadle EJ, Popple AL, Poon E, Morrow M, Stewart R, Yusko EC, Sanders CM, Vignali M, Emerson RO, Robins HS, Wilkinson RW, Honeychurch J, Illidge TM.

Clin Cancer Res. 2017 Sep 15;23(18):5514-5526. doi: 10.1158/1078-0432.CCR-16-1673. Epub 2017 May 22.

PMID:
28533222
7.

Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.

Lavin Y, Kobayashi S, Leader A, Amir ED, Elefant N, Bigenwald C, Remark R, Sweeney R, Becker CD, Levine JH, Meinhof K, Chow A, Kim-Shulze S, Wolf A, Medaglia C, Li H, Rytlewski JA, Emerson RO, Solovyov A, Greenbaum BD, Sanders C, Vignali M, Beasley MB, Flores R, Gnjatic S, Pe'er D, Rahman A, Amit I, Merad M.

Cell. 2017 May 4;169(4):750-765.e17. doi: 10.1016/j.cell.2017.04.014.

8.

Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire.

Emerson RO, DeWitt WS, Vignali M, Gravley J, Hu JK, Osborne EJ, Desmarais C, Klinger M, Carlson CS, Hansen JA, Rieder M, Robins HS.

Nat Genet. 2017 May;49(5):659-665. doi: 10.1038/ng.3822. Epub 2017 Apr 3.

PMID:
28369038
9.

Discovery of T Cell Receptor β Motifs Specific to HLA-B27-Positive Ankylosing Spondylitis by Deep Repertoire Sequence Analysis.

Faham M, Carlton V, Moorhead M, Zheng J, Klinger M, Pepin F, Asbury T, Vignali M, Emerson RO, Robins HS, Ireland J, Baechler-Gillespie E, Inman RD.

Arthritis Rheumatol. 2017 Apr;69(4):774-784. doi: 10.1002/art.40028.

10.

Tissue distribution and clonal diversity of the T and B cell repertoire in type 1 diabetes.

Seay HR, Yusko E, Rothweiler SJ, Zhang L, Posgai AL, Campbell-Thompson M, Vignali M, Emerson RO, Kaddis JS, Ko D, Nakayama M, Smith MJ, Cambier JC, Pugliese A, Atkinson MA, Robins HS, Brusko TM.

JCI Insight. 2016 Dec 8;1(20):e88242.

11.

Clonal expansion of CD8 T cells in the systemic circulation precedes development of ipilimumab-induced toxicities.

Subudhi SK, Aparicio A, Gao J, Zurita AJ, Araujo JC, Logothetis CJ, Tahir SA, Korivi BR, Slack RS, Vence L, Emerson RO, Yusko E, Vignali M, Robins HS, Sun J, Allison JP, Sharma P.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11919-11924. Epub 2016 Oct 3.

12.

A Public Database of Memory and Naive B-Cell Receptor Sequences.

DeWitt WS, Lindau P, Snyder TM, Sherwood AM, Vignali M, Carlson CS, Greenberg PD, Duerkopp N, Emerson RO, Robins HS.

PLoS One. 2016 Aug 11;11(8):e0160853. doi: 10.1371/journal.pone.0160853. eCollection 2016.

13.

Conventional and Regulatory CD4+ T Cells That Share Identical TCRs Are Derived from Common Clones.

Wolf KJ, Emerson RO, Pingel J, Buller RM, DiPaolo RJ.

PLoS One. 2016 Apr 21;11(4):e0153705. doi: 10.1371/journal.pone.0153705. eCollection 2016.

14.

Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci.

Dean J, Emerson RO, Vignali M, Sherwood AM, Rieder MJ, Carlson CS, Robins HS.

Genome Med. 2015 Nov 23;7:123. doi: 10.1186/s13073-015-0238-z.

15.

High-throughput pairing of T cell receptor α and β sequences.

Howie B, Sherwood AM, Berkebile AD, Berka J, Emerson RO, Williamson DW, Kirsch I, Vignali M, Rieder MJ, Carlson CS, Robins HS.

Sci Transl Med. 2015 Aug 19;7(301):301ra131. doi: 10.1126/scitranslmed.aac5624. Erratum in: Sci Transl Med. 2015 Oct 14;7(309):309er7.

PMID:
26290413
16.

Longitudinal analysis of peripheral blood T cell receptor diversity in patients with systemic lupus erythematosus by next-generation sequencing.

Thapa DR, Tonikian R, Sun C, Liu M, Dearth A, Petri M, Pepin F, Emerson RO, Ranger A.

Arthritis Res Ther. 2015 May 23;17:132. doi: 10.1186/s13075-015-0655-9.

17.

Common clonal origin of central and resident memory T cells following skin immunization.

Gaide O, Emerson RO, Jiang X, Gulati N, Nizza S, Desmarais C, Robins H, Krueger JG, Clark RA, Kupper TS.

Nat Med. 2015 Jun;21(6):647-53. doi: 10.1038/nm.3860. Epub 2015 May 11.

18.

Dynamics of the cytotoxic T cell response to a model of acute viral infection.

DeWitt WS, Emerson RO, Lindau P, Vignali M, Snyder TM, Desmarais C, Sanders C, Utsugi H, Warren EH, McElrath J, Makar KW, Wald A, Robins HS.

J Virol. 2015 Apr;89(8):4517-26. doi: 10.1128/JVI.03474-14. Epub 2015 Feb 4.

19.

PD-1 blockade induces responses by inhibiting adaptive immune resistance.

Tumeh PC, Harview CL, Yearley JH, Shintaku IP, Taylor EJ, Robert L, Chmielowski B, Spasic M, Henry G, Ciobanu V, West AN, Carmona M, Kivork C, Seja E, Cherry G, Gutierrez AJ, Grogan TR, Mateus C, Tomasic G, Glaspy JA, Emerson RO, Robins H, Pierce RH, Elashoff DA, Robert C, Ribas A.

Nature. 2014 Nov 27;515(7528):568-71. doi: 10.1038/nature13954.

20.

Defining the alloreactive T cell repertoire using high-throughput sequencing of mixed lymphocyte reaction culture.

Emerson RO, Mathew JM, Konieczna IM, Robins HS, Leventhal JR.

PLoS One. 2014 Nov 3;9(11):e111943. doi: 10.1371/journal.pone.0111943. eCollection 2014.

21.

Detection of minimal residual disease in B lymphoblastic leukemia by high-throughput sequencing of IGH.

Wu D, Emerson RO, Sherwood A, Loh ML, Angiolillo A, Howie B, Vogt J, Rieder M, Kirsch I, Carlson C, Williamson D, Wood BL, Robins H.

Clin Cancer Res. 2014 Sep 1;20(17):4540-8. doi: 10.1158/1078-0432.CCR-13-3231. Epub 2014 Jun 26.

22.

Using synthetic templates to design an unbiased multiplex PCR assay.

Carlson CS, Emerson RO, Sherwood AM, Desmarais C, Chung MW, Parsons JM, Steen MS, LaMadrid-Herrmannsfeldt MA, Williamson DW, Livingston RJ, Wu D, Wood BL, Rieder MJ, Robins H.

Nat Commun. 2013;4:2680. doi: 10.1038/ncomms3680.

PMID:
24157944
23.

High-throughput sequencing of T-cell receptors reveals a homogeneous repertoire of tumour-infiltrating lymphocytes in ovarian cancer.

Emerson RO, Sherwood AM, Rieder MJ, Guenthoer J, Williamson DW, Carlson CS, Drescher CW, Tewari M, Bielas JH, Robins HS.

J Pathol. 2013 Dec;231(4):433-440. doi: 10.1002/path.4260.

24.

Tumor-infiltrating lymphocytes in colorectal tumors display a diversity of T cell receptor sequences that differ from the T cells in adjacent mucosal tissue.

Sherwood AM, Emerson RO, Scherer D, Habermann N, Buck K, Staffa J, Desmarais C, Halama N, Jaeger D, Schirmacher P, Herpel E, Kloor M, Ulrich A, Schneider M, Ulrich CM, Robins H.

Cancer Immunol Immunother. 2013 Sep;62(9):1453-61. doi: 10.1007/s00262-013-1446-2. Epub 2013 Jun 16.

25.

Gypsy and the birth of the SCAN domain.

Emerson RO, Thomas JH.

J Virol. 2011 Nov;85(22):12043-52. doi: 10.1128/JVI.00867-11. Epub 2011 Aug 24.

26.

Extraordinary molecular evolution in the PRDM9 fertility gene.

Thomas JH, Emerson RO, Shendure J.

PLoS One. 2009 Dec 30;4(12):e8505. doi: 10.1371/journal.pone.0008505.

27.

Evolution of C2H2-zinc finger genes revisited.

Thomas JH, Emerson RO.

BMC Evol Biol. 2009 Mar 4;9:51. doi: 10.1186/1471-2148-9-51.

28.

Adaptive evolution in zinc finger transcription factors.

Emerson RO, Thomas JH.

PLoS Genet. 2009 Jan;5(1):e1000325. doi: 10.1371/journal.pgen.1000325. Epub 2009 Jan 2.

29.

Chaperone-like activity revealed in the matricellular protein SPARC.

Emerson RO, Sage EH, Ghosh JG, Clark JI.

J Cell Biochem. 2006 Jul 1;98(4):701-5.

PMID:
16598771

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