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Items: 20


Inferring Compensatory Evolution of cis- and trans-Regulatory Variation.

Zhang X, Emerson JJ.

Trends Genet. 2019 Jan;35(1):1-3. doi: 10.1016/j.tig.2018.11.003. Epub 2018 Nov 29. Review. No abstract available.


Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.

Solares EA, Chakraborty M, Miller DE, Kalsow S, Hall K, Perera AG, Emerson JJ, Hawley RS.

G3 (Bethesda). 2018 Oct 3;8(10):3143-3154. doi: 10.1534/g3.118.200162.


Hidden genetic variation shapes the structure of functional elements in Drosophila.

Chakraborty M, VanKuren NW, Zhao R, Zhang X, Kalsow S, Emerson JJ.

Nat Genet. 2018 Jan;50(1):20-25. doi: 10.1038/s41588-017-0010-y. Epub 2017 Dec 18.


Evolution: A Paradigm Shift in Snake Sex Chromosome Genetics.

Emerson JJ.

Curr Biol. 2017 Aug 21;27(16):R800-R803. doi: 10.1016/j.cub.2017.06.079.


Meiotic Sex Chromosome Inactivation: Compensation by Gene Traffic.

Long M, Emerson JJ.

Curr Biol. 2017 Jul 10;27(13):R659-R661. doi: 10.1016/j.cub.2017.05.077.


Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.

Chakraborty M, Baldwin-Brown JG, Long AD, Emerson JJ.

Nucleic Acids Res. 2016 Nov 2;44(19):e147. Epub 2016 Jul 25.


Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation.

Vicoso B, Emerson JJ, Zektser Y, Mahajan S, Bachtrog D.

PLoS Biol. 2013;11(8):e1001643. doi: 10.1371/journal.pbio.1001643. Epub 2013 Aug 27.


Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast.

Schaefke B, Emerson JJ, Wang TY, Lu MY, Hsieh LC, Li WH.

Mol Biol Evol. 2013 Sep;30(9):2121-33. doi: 10.1093/molbev/mst114. Epub 2013 Jun 22.


Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture.

Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH.

PLoS Genet. 2012;8(12):e1003080. doi: 10.1371/journal.pgen.1003080. Epub 2012 Dec 20.


Drosophila duplication hotspots are associated with late-replicating regions of the genome.

Cardoso-Moreira M, Emerson JJ, Clark AG, Long M.

PLoS Genet. 2011 Nov;7(11):e1002340. doi: 10.1371/journal.pgen.1002340. Epub 2011 Nov 3.


Genetically distinct coelacanth population off the northern Tanzanian coast.

Nikaido M, Sasaki T, Emerson JJ, Aibara M, Mzighani SI, Budeba YL, Ngatunga BP, Iwata M, Abe Y, Li WH, Okada N.

Proc Natl Acad Sci U S A. 2011 Nov 1;108(44):18009-13. doi: 10.1073/pnas.1115675108. Epub 2011 Oct 24.


The genetic basis of evolutionary change in gene expression levels.

Emerson JJ, Li WH.

Philos Trans R Soc Lond B Biol Sci. 2010 Aug 27;365(1552):2581-90. doi: 10.1098/rstb.2010.0005.


Natural selection on cis and trans regulation in yeasts.

Emerson JJ, Hsieh LC, Sung HM, Wang TY, Huang CJ, Lu HH, Lu MY, Wu SH, Li WH.

Genome Res. 2010 Jun;20(6):826-36. doi: 10.1101/gr.101576.109. Epub 2010 May 5.


Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M.

Science. 2008 Jun 20;320(5883):1629-31. doi: 10.1126/science.1158078. Epub 2008 Jun 5.


Genetic, genomic, and functional analysis of the granule lattice proteins in Tetrahymena secretory granules.

Cowan AT, Bowman GR, Edwards KF, Emerson JJ, Turkewitz AP.

Mol Biol Cell. 2005 Sep;16(9):4046-60. Epub 2005 Jun 15.


Evolutionary genomics: codon volatility does not detect selection.

Chen Y, Emerson JJ, Martin TM.

Nature. 2005 Jan 20;433(7023):E6-7; discussion E7-8.


Sex chromosomes and male functions: where do new genes go?

Betrán E, Emerson JJ, Kaessmann H, Long M.

Cell Cycle. 2004 Jul;3(7):873-5. Epub 2004 Jul 5. Review.


Nucleotide variation and recombination along the fourth chromosome in Drosophila simulans.

Wang W, Thornton K, Emerson JJ, Long M.

Genetics. 2004 Apr;166(4):1783-94.


Extensive gene traffic on the mammalian X chromosome.

Emerson JJ, Kaessmann H, Betrán E, Long M.

Science. 2004 Jan 23;303(5657):537-40.


Models and data on plant-enemy coevolution.

Bergelson J, Dwyer G, Emerson JJ.

Annu Rev Genet. 2001;35:469-99. Review.


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