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Items: 39

1.

Inhibition of DUSP6 sensitizes ovarian cancer cells to chemotherapeutic agents via regulation of ERK signaling response genes.

James NE, Beffa L, Oliver MT, Borgstadt AD, Emerson JB, Chichester CO, Yano N, Freiman RN, DiSilvestro PA, Ribeiro JR.

Oncotarget. 2019 May 21;10(36):3315-3327. eCollection 2019 May 21.

2.

Soil Viruses: A New Hope.

Emerson JB.

mSystems. 2019 May 28;4(3). pii: e00120-19. doi: 10.1128/mSystems.00120-19.

3.

Less Is More: Minimally Invasive and Quality Surgical Management of Gynecologic Cancer.

Cantillo E, Emerson JB, Mathews C.

Obstet Gynecol Clin North Am. 2019 Mar;46(1):55-66. doi: 10.1016/j.ogc.2018.09.004. Review.

PMID:
30683266
4.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
5.

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing.

Trubl G, Jang HB, Roux S, Emerson JB, Solonenko N, Vik DR, Solden L, Ellenbogen J, Runyon AT, Bolduc B, Woodcroft BJ, Saleska SR, Tyson GW, Wrighton KC, Sullivan MB, Rich VI.

mSystems. 2018 Oct 2;3(5). pii: e00076-18. doi: 10.1128/mSystems.00076-18. eCollection 2018 Sep-Oct.

6.

Host-linked soil viral ecology along a permafrost thaw gradient.

Emerson JB, Roux S, Brum JR, Bolduc B, Woodcroft BJ, Jang HB, Singleton CM, Solden LM, Naas AE, Boyd JA, Hodgkins SB, Wilson RM, Trubl G, Li C, Frolking S, Pope PB, Wrighton KC, Crill PM, Chanton JP, Saleska SR, Tyson GW, Rich VI, Sullivan MB.

Nat Microbiol. 2018 Aug;3(8):870-880. doi: 10.1038/s41564-018-0190-y. Epub 2018 Jul 16.

PMID:
30013236
7.

Genome-centric view of carbon processing in thawing permafrost.

Woodcroft BJ, Singleton CM, Boyd JA, Evans PN, Emerson JB, Zayed AAF, Hoelzle RD, Lamberton TO, McCalley CK, Hodgkins SB, Wilson RM, Purvine SO, Nicora CD, Li C, Frolking S, Chanton JP, Crill PM, Saleska SR, Rich VI, Tyson GW.

Nature. 2018 Aug;560(7716):49-54. doi: 10.1038/s41586-018-0338-1. Epub 2018 Jul 16.

PMID:
30013118
8.

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

Probst AJ, Ladd B, Jarett JK, Geller-McGrath DE, Sieber CMK, Emerson JB, Anantharaman K, Thomas BC, Malmstrom RR, Stieglmeier M, Klingl A, Woyke T, Ryan MC, Banfield JF.

Nat Microbiol. 2018 Mar;3(3):328-336. doi: 10.1038/s41564-017-0098-y. Epub 2018 Jan 29.

9.

Opioid Knowledge and Prescribing Practices Among Obstetrician-Gynecologists.

Madsen AM, Stark LM, Has P, Emerson JB, Schulkin J, Matteson KA.

Obstet Gynecol. 2018 Jan;131(1):150-157. doi: 10.1097/AOG.0000000000002407.

PMID:
29215508
10.

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity.

Roux S, Emerson JB, Eloe-Fadrosh EA, Sullivan MB.

PeerJ. 2017 Sep 21;5:e3817. doi: 10.7717/peerj.3817. eCollection 2017.

11.

Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems.

Emerson JB, Adams RI, Román CMB, Brooks B, Coil DA, Dahlhausen K, Ganz HH, Hartmann EM, Hsu T, Justice NB, Paulino-Lima IG, Luongo JC, Lymperopoulou DS, Gomez-Silvan C, Rothschild-Mancinelli B, Balk M, Huttenhower C, Nocker A, Vaishampayan P, Rothschild LJ.

Microbiome. 2017 Aug 16;5(1):86. doi: 10.1186/s40168-017-0285-3. Review.

12.

Putative archaeal viruses from the mesopelagic ocean.

Vik DR, Roux S, Brum JR, Bolduc B, Emerson JB, Padilla CC, Stewart FJ, Sullivan MB.

PeerJ. 2017 Jun 15;5:e3428. doi: 10.7717/peerj.3428. eCollection 2017.

13.

High temporal variability in airborne bacterial diversity and abundance inside single-family residences.

Emerson JB, Keady PB, Clements N, Morgan EE, Awerbuch J, Miller SL, Fierer N.

Indoor Air. 2017 May;27(3):576-586. doi: 10.1111/ina.12347. Epub 2016 Oct 31.

PMID:
27743387
14.

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield JF.

Environ Microbiol. 2017 Feb;19(2):459-474. doi: 10.1111/1462-2920.13362. Epub 2016 Jul 7.

PMID:
27112493
15.

Gender Differences in Scholarly Productivity Within Academic Gynecologic Oncology Departments.

Hill EK, Blake RA, Emerson JB, Svider P, Eloy JA, Raker C, Robison K, Stuckey A.

Obstet Gynecol. 2015 Dec;126(6):1279-84. doi: 10.1097/AOG.0000000000001133.

16.

Third-Trimester Prenatal Syphilis Screening: A Cost-Effectiveness Analysis.

Albright CM, Emerson JB, Werner EF, Hughes BL.

Obstet Gynecol. 2015 Sep;126(3):479-85. doi: 10.1097/AOG.0000000000000997.

PMID:
26244531
17.

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.

Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF.

ISME J. 2015 Dec;9(12):2697-711. doi: 10.1038/ismej.2015.66. Epub 2015 Apr 28.

18.

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla.

Emerson JB, Thomas BC, Alvarez W, Banfield JF.

Environ Microbiol. 2016 Jun;18(6):1686-703. doi: 10.1111/1462-2920.12817. Epub 2015 Apr 8.

PMID:
25727367
19.

De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.

Tully BJ, Emerson JB, Andrade K, Brocks JJ, Allen EE, Banfield JF, Heidelberg KB.

Archaea. 2015 Feb 1;2015:875784. doi: 10.1155/2015/875784. eCollection 2015.

20.

Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood.

Emerson JB, Keady PB, Brewer TE, Clements N, Morgan EE, Awerbuch J, Miller SL, Fierer N.

Environ Sci Technol. 2015 Mar 3;49(5):2675-84. doi: 10.1021/es503845j. Epub 2015 Feb 13.

PMID:
25643125
21.

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface.

Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, Heise M, Schintlmeister A, Schmid M, Wagner M, Gribaldo S, Banfield JF, Moissl-Eichinger C.

Nat Commun. 2014 Nov 26;5:5497. doi: 10.1038/ncomms6497.

PMID:
25425419
22.

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE.

ISME J. 2014 May;8(5):979-90. doi: 10.1038/ismej.2013.221. Epub 2013 Dec 12.

23.

Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains.

Doll HM, Armitage DW, Daly RA, Emerson JB, Goltsman DS, Yelton AP, Kerekes J, Firestone MK, Potts MD.

BMC Microbiol. 2013 Nov 15;13:259. doi: 10.1186/1471-2180-13-259.

24.

Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere.

Bowers RM, Clements N, Emerson JB, Wiedinmyer C, Hannigan MP, Fierer N.

Environ Sci Technol. 2013;47(21):12097-106. doi: 10.1021/es402970s. Epub 2013 Oct 22.

PMID:
24083487
25.

New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake.

Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield JF.

Appl Environ Microbiol. 2013 Nov;79(21):6755-64. doi: 10.1128/AEM.01946-13. Epub 2013 Aug 30.

26.

Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia.

Emerson JB, Andrade K, Thomas BC, Norman A, Allen EE, Heidelberg KB, Banfield JF.

Archaea. 2013;2013:370871. doi: 10.1155/2013/370871. Epub 2013 Jun 18.

27.

Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia.

Heidelberg KB, Nelson WC, Holm JB, Eisenkolb N, Andrade K, Emerson JB.

Front Microbiol. 2013 May 13;4:115. doi: 10.3389/fmicb.2013.00115. eCollection 2013.

28.

Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly.

Emerson JB, Thomas BC, Andrade K, Allen EE, Heidelberg KB, Banfield JF.

Appl Environ Microbiol. 2012 Sep;78(17):6309-20. doi: 10.1128/AEM.01212-12. Epub 2012 Jul 6.

29.

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE.

ISME J. 2012 Jan;6(1):81-93. doi: 10.1038/ismej.2011.78. Epub 2011 Jun 30.

30.

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.

Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1948-53. doi: 10.1073/pnas.0806191105. Epub 2009 Jan 30.

31.

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.

DeBoy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B, Gilbert HJ, Nelson KE.

J Bacteriol. 2008 Aug;190(15):5455-63. doi: 10.1128/JB.01701-07. Epub 2008 Jun 13.

32.

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.

Mongodin EF, Shapir N, Daugherty SC, DeBoy RT, Emerson JB, Shvartzbeyn A, Radune D, Vamathevan J, Riggs F, Grinberg V, Khouri H, Wackett LP, Nelson KE, Sadowsky MJ.

PLoS Genet. 2006 Dec;2(12):e214.

33.

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences.

DeBoy RT, Mongodin EF, Emerson JB, Nelson KE.

J Bacteriol. 2006 Apr;188(7):2364-74.

34.

Microbial metagenomics.

Mongodin EF, Emerson JB, Nelson KE.

Genome Biol. 2005;6(10):347. Epub 2005 Sep 27. No abstract available.

35.

Precision of the one- versus two-handed method of skinfold measurement in the obese.

Pham CL, Mueller WH, Wear ML, Emerson JB, Hanis CL, Schull WJ.

Am J Hum Biol. 1995;7(5):617-621. doi: 10.1002/ajhb.1310070509.

PMID:
28557120
36.

Which measure of body fat distribution is best for epidemiologic research?

Mueller WH, Wear ML, Hanis CL, Emerson JB, Barton SA, Hewett-Emmett D, Schull WJ.

Am J Epidemiol. 1991 May 1;133(9):858-69.

PMID:
2028976
37.

Functional differences between central and peripheral fat.

Mueller WH, Emerson JB.

Am J Clin Nutr. 1988 Nov;48(5):1343-4. No abstract available.

PMID:
3189223
38.

Case of Double Optic Neuritis.

Emerson JB.

Trans Am Ophthalmol Soc. 1896;7:598-601. No abstract available.

39.

A Case of Progressive Hyperopic Astigmatism.

Emerson JB.

Trans Am Ophthalmol Soc. 1888;5:60-2. No abstract available.

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