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A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index.

Barco RA, Garrity GM, Scott JJ, Amend JP, Nealson KH, Emerson D.

mBio. 2020 Jan 14;11(1). pii: e02475-19. doi: 10.1128/mBio.02475-19.


Commentary: Biomarkers and magical thinking.

Chikwe J, Emerson D.

J Thorac Cardiovasc Surg. 2019 Nov 11. pii: S0022-5223(19)32518-8. doi: 10.1016/j.jtcvs.2019.10.126. [Epub ahead of print] No abstract available.


Immunological Complexity of the Prostate Cancer Microenvironment Influences the Response to Immunotherapy.

Prokhnevska N, Emerson DA, Kissick HT, Redmond WL.

Adv Exp Med Biol. 2019;1210:121-147. doi: 10.1007/978-3-030-32656-2_7.


Chromatin structure dynamics during the mitosis-to-G1 phase transition.

Zhang H, Emerson DJ, Gilgenast TG, Titus KR, Lan Y, Huang P, Zhang D, Wang H, Keller CA, Giardine B, Hardison RC, Phillips-Cremins JE, Blobel GA.

Nature. 2019 Dec;576(7785):158-162. doi: 10.1038/s41586-019-1778-y. Epub 2019 Nov 27.


Hunter-Gatherers Harvested and Heated Microbial Biogenic Iron Oxides to Produce Rock Art Pigment.

MacDonald BL, Stalla D, He X, Rahemtulla F, Emerson D, Dube PA, Maschmann MR, Klesner CE, White TA.

Sci Rep. 2019 Nov 19;9(1):17070. doi: 10.1038/s41598-019-53564-w.


A new paradigm in mechanical circulatory support: 100 patient experience.

Chung JS, Emerson D, Ramzy D, Akhmerov A, Megna D, Esmailian F, Kobashigawa J, Cole RM, Moriguchi J, Trento A.

Ann Thorac Surg. 2019 Sep 26. pii: S0003-4975(19)31430-4. doi: 10.1016/j.athoracsur.2019.08.041. [Epub ahead of print]


Genome Sequence of Mariprofundus sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral.

Lopez A, Albino D, Beraki S, Broomell S, Canela R, Dingmon T, Estrada S, Fernandez M, Savalia P, Nealson K, Emerson D, Barco R, Tully BJ, Amend JP.

Microbiol Resour Announc. 2019 Sep 26;8(39). pii: e00995-19. doi: 10.1128/MRA.00995-19.


A subset of topologically associating domains fold into mesoscale core-periphery networks.

Huang H, Chen ST, Titus KR, Emerson DJ, Bassett DS, Phillips-Cremins JE.

Sci Rep. 2019 Jul 2;9(1):9526. doi: 10.1038/s41598-019-45457-9.


Limitations in converting waste gases to fuels and chemicals.

Emerson DF, Stephanopoulos G.

Curr Opin Biotechnol. 2019 Oct;59:39-45. doi: 10.1016/j.copbio.2019.02.004. Epub 2019 Mar 8. Review.


Combined Heart and Kidney Transplantation: Clinical Experience in 100 Consecutive Patients.

Awad MA, Czer LSC, Emerson D, Jordan S, De Robertis MA, Mirocha J, Kransdorf E, Chang DH, Patel J, Kittleson M, Ramzy D, Chung JS, Cohen JL, Esmailian F, Trento A, Kobashigawa JA.

J Am Heart Assoc. 2019 Feb 19;8(4):e010570. doi: 10.1161/JAHA.118.010570.


The Fe(II)-oxidizing Zetaproteobacteria: historical, ecological and genomic perspectives.

McAllister SM, Moore RM, Gartman A, Luther GW, Emerson D, Chan CS.

FEMS Microbiol Ecol. 2019 Apr 1;95(4). pii: fiz015. doi: 10.1093/femsec/fiz015.


The role of iron-oxidizing bacteria in biocorrosion: a review.

Emerson D.

Biofouling. 2018 Oct;34(9):989-1000. doi: 10.1080/08927014.2018.1526281. Epub 2019 Jan 14. Review.


Enhancing hydrogen-dependent growth of and carbon dioxide fixation by Clostridium ljungdahlii through nitrate supplementation.

Emerson DF, Woolston BM, Liu N, Donnelly M, Currie DH, Stephanopoulos G.

Biotechnol Bioeng. 2019 Feb;116(2):294-306. doi: 10.1002/bit.26847. Epub 2018 Dec 9.


Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries.

Sun JH, Zhou L, Emerson DJ, Phyo SA, Titus KR, Gong W, Gilgenast TG, Beagan JA, Davidson BL, Tassone F, Phillips-Cremins JE.

Cell. 2018 Sep 20;175(1):224-238.e15. doi: 10.1016/j.cell.2018.08.005. Epub 2018 Aug 30.


Role of Drill Sergeants in Nutrition Behaviors of Soldiers in Basic Combat Training.

Jayne JM, Bujak BK, Torres-McGehee TM, Frongillo EA, Cable SJ, Glover SH, Emerson DM, Blake CE.

J Acad Nutr Diet. 2019 Jan;119(1):69-75. doi: 10.1016/j.jand.2018.05.009. Epub 2018 Jul 27. Erratum in: J Acad Nutr Diet. 2018 Dec;118(12):2386.


Metabolic Processes Preserved as Biosignatures in Iron-Oxidizing Microorganisms: Implications for Biosignature Detection on Mars.

Floyd MAM, Williams AJ, Grubisic A, Emerson D.

Astrobiology. 2019 Jan;19(1):40-52. doi: 10.1089/ast.2017.1745. Epub 2018 Jul 25.


Rediverting carbon flux in Clostridium ljungdahlii using CRISPR interference (CRISPRi).

Woolston BM, Emerson DF, Currie DH, Stephanopoulos G.

Metab Eng. 2018 Jul;48:243-253. doi: 10.1016/j.ymben.2018.06.006. Epub 2018 Jun 15.


Genome Sequence of Geothermobacter sp. Strain HR-1, an Iron Reducer from the Lō'ihi Seamount, Hawai'i.

Smith H, Abuyen K, Tremblay J, Savalia P, Pérez-Rodríguez I, Emerson D, Tully B, Amend J.

Genome Announc. 2018 May 24;6(21). pii: e00339-18. doi: 10.1128/genomeA.00339-18.


Fluorescent Anesthetics.

Emerson DJ, Dmochowski IJ.

Methods Enzymol. 2018;603:93-101. doi: 10.1016/bs.mie.2018.02.006. Epub 2018 Apr 4.


Overcoming Tumor-Induced Immune Suppression: From Relieving Inhibition to Providing Costimulation with T Cell Agonists.

Emerson DA, Redmond WL.

BioDrugs. 2018 Jun;32(3):221-231. doi: 10.1007/s40259-018-0277-2. Review.


A Healthy Eating Identity is Associated with Healthier Food Choice Behaviors Among U.S. Army Soldiers.

Jayne JM, Frongillo EA, Torres-McGehee TM, Emerson DM, Glover SH, Blake CE.

Mil Med. 2018 Nov 1;183(11-12):e666-e670. doi: 10.1093/milmed/usy056.


Insights into the Fundamental Physiology of the Uncultured Fe-Oxidizing Bacterium Leptothrix ochracea.

Fleming EJ, Woyke T, Donatello RA, Kuypers MMM, Sczyrba A, Littmann S, Emerson D.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02239-17. doi: 10.1128/AEM.02239-17. Print 2018 May 1.


Genome Sequence of Hydrogenovibrio sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer.

Neely C, Bou Khalil C, Cervantes A, Diaz R, Escobar A, Ho K, Hoefler S, Smith HH, Abuyen K, Savalia P, Nealson KH, Emerson D, Tully B, Barco RA, Amend J.

Genome Announc. 2018 Feb 1;6(5). pii: e01581-17. doi: 10.1128/genomeA.01581-17.


Biological rejuvenation of iron oxides in bioturbated marine sediments.

Beam JP, Scott JJ, McAllister SM, Chan CS, McManus J, Meysman FJR, Emerson D.

ISME J. 2018 May;12(5):1389-1394. doi: 10.1038/s41396-017-0032-6. Epub 2018 Jan 17.


Detecting hierarchical genome folding with network modularity.

Norton HK, Emerson DJ, Huang H, Kim J, Titus KR, Gu S, Bassett DS, Phillips-Cremins JE.

Nat Methods. 2018 Feb;15(2):119-122. doi: 10.1038/nmeth.4560. Epub 2018 Jan 15.


Numerical Simulation of Ion Transport in a Nano-Electrospray Ion Source at Atmospheric Pressure.

Wang W, Bajic S, John B, Emerson DR.

J Am Soc Mass Spectrom. 2018 Mar;29(3):600-612. doi: 10.1007/s13361-017-1863-0. Epub 2018 Jan 9.


Quantitative analysis of O2 and Fe2+ profiles in gradient tubes for cultivation of microaerophilic Iron(II)-oxidizing bacteria.

Lueder U, Druschel G, Emerson D, Kappler A, Schmidt C.

FEMS Microbiol Ecol. 2018 Feb 1;94(2). doi: 10.1093/femsec/fix177.


Comparative Genomic Analysis of Neutrophilic Iron(II) Oxidizer Genomes for Candidate Genes in Extracellular Electron Transfer.

He S, Barco RA, Emerson D, Roden EE.

Front Microbiol. 2017 Aug 21;8:1584. doi: 10.3389/fmicb.2017.01584. eCollection 2017.


Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.

Mori JF, Scott JJ, Hager KW, Moyer CL, Küsel K, Emerson D.

ISME J. 2017 Nov;11(11):2624-2636. doi: 10.1038/ismej.2017.132. Epub 2017 Aug 18.


Individual fluid plans versus ad libitum on hydration status in minor professional ice hockey players.

Emerson DM, Torres-McGehee TM, Emerson CC, LaSalle TL.

J Int Soc Sports Nutr. 2017 Aug 1;14:25. doi: 10.1186/s12970-017-0183-x. eCollection 2017.


The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries.

Hsu SC, Gilgenast TG, Bartman CR, Edwards CR, Stonestrom AJ, Huang P, Emerson DJ, Evans P, Werner MT, Keller CA, Giardine B, Hardison RC, Raj A, Phillips-Cremins JE, Blobel GA.

Mol Cell. 2017 Apr 6;66(1):102-116.e7. doi: 10.1016/j.molcel.2017.02.027.


Effectiveness of an Extended Yoga Treatment for Women with Chronic Posttraumatic Stress Disorder.

Price M, Spinazzola J, Musicaro R, Turner J, Suvak M, Emerson D, van der Kolk B.

J Altern Complement Med. 2017 Apr;23(4):300-309. doi: 10.1089/acm.2015.0266. Epub 2017 Jan 25.


Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō'ihi Seamount.

Scott JJ, Glazer BT, Emerson D.

Environ Microbiol. 2017 Jan;19(1):301-316. doi: 10.1111/1462-2920.13607. Epub 2017 Jan 23.


Functional status as a predictor of outcomes in open and endovascular abdominal aortic aneurysm repair.

Endicott KM, Emerson D, Amdur R, Macsata R.

J Vasc Surg. 2017 Jan;65(1):40-45. doi: 10.1016/j.jvs.2016.05.079. Epub 2016 Jul 25.


Multiple Drug Treatments That Increase cAMP Signaling Restore Long-Term Memory and Aberrant Signaling in Fragile X Syndrome Models.

Choi CH, Schoenfeld BP, Bell AJ, Hinchey J, Rosenfelt C, Gertner MJ, Campbell SR, Emerson D, Hinchey P, Kollaros M, Ferrick NJ, Chambers DB, Langer S, Sust S, Malik A, Terlizzi AM, Liebelt DA, Ferreiro D, Sharma A, Koenigsberg E, Choi RJ, Louneva N, Arnold SE, Featherstone RE, Siegel SJ, Zukin RS, McDonald TV, Bolduc FV, Jongens TA, McBride SM.

Front Behav Neurosci. 2016 Jun 30;10:136. doi: 10.3389/fnbeh.2016.00136. eCollection 2016.


The role of microaerophilic Fe-oxidizing micro-organisms in producing banded iron formations.

Chan CS, Emerson D, Luther GW 3rd.

Geobiology. 2016 Sep;14(5):509-28. doi: 10.1111/gbi.12192. Epub 2016 Jul 8. Review.


The Architecture of Iron Microbial Mats Reflects the Adaptation of Chemolithotrophic Iron Oxidation in Freshwater and Marine Environments.

Chan CS, McAllister SM, Leavitt AH, Glazer BT, Krepski ST, Emerson D.

Front Microbiol. 2016 Jun 1;7:796. doi: 10.3389/fmicb.2016.00796. eCollection 2016.


In Situ Microbial Community Succession on Mild Steel in Estuarine and Marine Environments: Exploring the Role of Iron-Oxidizing Bacteria.

McBeth JM, Emerson D.

Front Microbiol. 2016 May 24;7:767. doi: 10.3389/fmicb.2016.00767. eCollection 2016.


Insulin signaling misregulation underlies circadian and cognitive deficits in a Drosophila fragile X model.

Monyak RE, Emerson D, Schoenfeld BP, Zheng X, Chambers DB, Rosenfelt C, Langer S, Hinchey P, Choi CH, McDonald TV, Bolduc FV, Sehgal A, McBride SMJ, Jongens TA.

Mol Psychiatry. 2017 Aug;22(8):1140-1148. doi: 10.1038/mp.2016.51. Epub 2016 Apr 19.


Integrated bioprocess for conversion of gaseous substrates to liquids.

Hu P, Chakraborty S, Kumar A, Woolston B, Liu H, Emerson D, Stephanopoulos G.

Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):3773-8. doi: 10.1073/pnas.1516867113. Epub 2016 Mar 7.


Structural Iron (II) of Basaltic Glass as an Energy Source for Zetaproteobacteria in an Abyssal Plain Environment, Off the Mid Atlantic Ridge.

Henri PA, Rommevaux-Jestin C, Lesongeur F, Mumford A, Emerson D, Godfroy A, Ménez B.

Front Microbiol. 2016 Jan 21;6:1518. doi: 10.3389/fmicb.2015.01518. eCollection 2015.


The Irony of Iron - Biogenic Iron Oxides as an Iron Source to the Ocean.

Emerson D.

Front Microbiol. 2016 Jan 6;6:1502. doi: 10.3389/fmicb.2015.01502. eCollection 2015.


Nanostructured carbon membranes for breakthrough filtration applications: advancing the science, engineering and design.

Mattia D, Corry B, Lockerby D, Emerson D, Reese J.

Philos Trans A Math Phys Eng Sci. 2016 Feb 13;374(2060). pii: 20150035. doi: 10.1098/rsta.2015.0035. No abstract available.


Video-assisted thoracoscopic surgery for complex mediastinal mass resections.

Marshall MB, DeMarchi L, Emerson DA, Holzner ML.

Ann Cardiothorac Surg. 2015 Nov;4(6):509-18. doi: 10.3978/j.issn.2225-319X.2015.11.01. Review.


Competition of lattice and basis for alignment of nematic liquid crystals.

DeBenedictis A, Atherton TJ, Anquetil-Deck C, Cleaver DJ, Emerson DB, Wolak M, Adler JH.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Oct;92(4):042501. doi: 10.1103/PhysRevE.92.042501. Epub 2015 Oct 5.


Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores.

Sanders JG, Beichman AC, Roman J, Scott JJ, Emerson D, McCarthy JJ, Girguis PR.

Nat Commun. 2015 Sep 22;6:8285. doi: 10.1038/ncomms9285.


Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling.

Emerson D, Scott JJ, Benes J, Bowden WB.

Appl Environ Microbiol. 2015 Dec;81(23):8066-75. doi: 10.1128/AEM.02832-15. Epub 2015 Sep 18.


Coronary Artery Bypass Grafting During Acute Coronary Syndrome: Outcomes and Comparison of Off-Pump to Conventional Coronary Artery Bypass Grafting at a Veteran Affairs Hospital.

Emerson DA, Hynes CF, Greenberg MD, Trachiotis GD.

Innovations (Phila). 2015 May-Jun;10(3):157-62. doi: 10.1097/IMI.0000000000000159.


New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph.

Barco RA, Emerson D, Sylvan JB, Orcutt BN, Jacobson Meyers ME, Ramírez GA, Zhong JD, Edwards KJ.

Appl Environ Microbiol. 2015 Sep 1;81(17):5927-37. doi: 10.1128/AEM.01374-15. Epub 2015 Jun 19.

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