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Items: 1 to 50 of 457

1.

Two Pathways for the Activity-Dependent Growth and Differentiation of Synaptic Boutons in Drosophila.

Vasin A, Sabeva N, Torres C, Phan S, Bushong EA, Ellisman MH, Bykhovskaia M.

eNeuro. 2019 Aug 6. pii: ENEURO.0060-19.2019. doi: 10.1523/ENEURO.0060-19.2019. [Epub ahead of print]

2.

Split-miniSOG for Spatially Detecting Intracellular Protein-Protein Interactions by Correlated Light and Electron Microscopy.

Boassa D, Lemieux SP, Lev-Ram V, Hu J, Xiong Q, Phan S, Mackey M, Ramachandra R, Peace RE, Adams SR, Ellisman MH, Ngo JT.

Cell Chem Biol. 2019 Jul 31. pii: S2451-9456(19)30238-7. doi: 10.1016/j.chembiol.2019.07.007. [Epub ahead of print]

PMID:
31378710
3.

Class IIa HDACs regulate learning and memory through dynamic experience-dependent repression of transcription.

Zhu Y, Huang M, Bushong E, Phan S, Uytiepo M, Beutter E, Boemer D, Tsui K, Ellisman M, Maximov A.

Nat Commun. 2019 Aug 2;10(1):3469. doi: 10.1038/s41467-019-11409-0.

4.

The dynamic switch mechanism that leads to activation of LRRK2 is embedded in the DFGψ motif in the kinase domain.

Schmidt SH, Knape MJ, Boassa D, Mumdey N, Kornev AP, Ellisman MH, Taylor SS, Herberg FW.

Proc Natl Acad Sci U S A. 2019 Jul 23;116(30):14979-14988. doi: 10.1073/pnas.1900289116. Epub 2019 Jul 10.

5.

PRCD is essential for high-fidelity photoreceptor disc formation.

Spencer WJ, Ding JD, Lewis TR, Yu C, Phan S, Pearring JN, Kim KY, Thor A, Mathew R, Kalnitsky J, Hao Y, Travis AM, Biswas SK, Lo WK, Besharse JC, Ellisman MH, Saban DR, Burns ME, Arshavsky VY.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):13087-13096. doi: 10.1073/pnas.1906421116. Epub 2019 Jun 12.

PMID:
31189593
6.

Age Mosaicism across Multiple Scales in Adult Tissues.

Arrojo E Drigo R, Lev-Ram V, Tyagi S, Ramachandra R, Deerinck T, Bushong E, Phan S, Orphan V, Lechene C, Ellisman MH, Hetzer MW.

Cell Metab. 2019 Aug 6;30(2):343-351.e3. doi: 10.1016/j.cmet.2019.05.010. Epub 2019 Jun 6.

PMID:
31178361
7.

Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons.

Zhang Y, Tsang TK, Bushong EA, Chu LA, Chiang AS, Ellisman MH, Reingruber J, Su CY.

Nat Commun. 2019 Apr 5;10(1):1560. doi: 10.1038/s41467-019-09346-z.

8.

Adipocyte lipolysis affects Perilipin 5 and cristae organization at the cardiac lipid droplet-mitochondrial interface.

Varghese M, Kimler VA, Ghazi FR, Rathore GK, Perkins GA, Ellisman MH, Granneman JG.

Sci Rep. 2019 Mar 18;9(1):4734. doi: 10.1038/s41598-019-41329-4.

9.

Directed Evolution of Split APEX2 Peroxidase.

Han Y, Branon TC, Martell JD, Boassa D, Shechner D, Ellisman MH, Ting A.

ACS Chem Biol. 2019 Apr 19;14(4):619-635. doi: 10.1021/acschembio.8b00919. Epub 2019 Mar 8.

10.

Fibrinogen Induces Microglia-Mediated Spine Elimination and Cognitive Impairment in an Alzheimer's Disease Model.

Merlini M, Rafalski VA, Rios Coronado PE, Gill TM, Ellisman M, Muthukumar G, Subramanian KS, Ryu JK, Syme CA, Davalos D, Seeley WW, Mucke L, Nelson RB, Akassoglou K.

Neuron. 2019 Mar 20;101(6):1099-1108.e6. doi: 10.1016/j.neuron.2019.01.014. Epub 2019 Feb 5.

PMID:
30737131
11.

Visualization of long-lived proteins reveals age mosaicism within nuclei of postmitotic cells.

Toyama BH, Arrojo E Drigo R, Lev-Ram V, Ramachandra R, Deerinck TJ, Lechene C, Ellisman MH, Hetzer MW.

J Cell Biol. 2019 Feb 4;218(2):433-444. doi: 10.1083/jcb.201809123. Epub 2018 Dec 14.

12.

Verifying, Challenging, and Discovering New Synapses Among Fully EM-Reconstructed Neurons in the Leech Ganglion.

Pipkin JE, Bushong EA, Ellisman MH, Kristan WB Jr.

Front Neuroanat. 2018 Nov 14;12:95. doi: 10.3389/fnana.2018.00095. eCollection 2018.

13.

Nano-structural analysis of engrafted human induced pluripotent stem cell-derived cardiomyocytes in mouse hearts using a genetic-probe APEX2.

Hatani T, Funakoshi S, Deerinck TJ, Bushong EA, Kimura T, Takeshima H, Ellisman MH, Hoshijima M, Yoshida Y.

Biochem Biophys Res Commun. 2018 Nov 10;505(4):1251-1256. doi: 10.1016/j.bbrc.2018.10.020. Epub 2018 Oct 15.

PMID:
30333092
14.

Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration.

Ryu JK, Rafalski VA, Meyer-Franke A, Adams RA, Poda SB, Rios Coronado PE, Pedersen LØ, Menon V, Baeten KM, Sikorski SL, Bedard C, Hanspers K, Bardehle S, Mendiola AS, Davalos D, Machado MR, Chan JP, Plastira I, Petersen MA, Pfaff SJ, Ang KK, Hallenbeck KK, Syme C, Hakozaki H, Ellisman MH, Swanson RA, Zamvil SS, Arkin MR, Zorn SH, Pico AR, Mucke L, Freedman SB, Stavenhagen JB, Nelson RB, Akassoglou K.

Nat Immunol. 2018 Nov;19(11):1212-1223. doi: 10.1038/s41590-018-0232-x. Epub 2018 Oct 15.

15.

CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation.

Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH.

Nat Methods. 2018 Sep;15(9):677-680. doi: 10.1038/s41592-018-0106-z. Epub 2018 Aug 31.

16.

Dysfunctional Autism Risk Genes Cause Circuit-Specific Connectivity Deficits With Distinct Developmental Trajectories.

Zerbi V, Ielacqua GD, Markicevic M, Haberl MG, Ellisman MH, A-Bhaskaran A, Frick A, Rudin M, Wenderoth N.

Cereb Cortex. 2018 Jul 1;28(7):2495-2506. doi: 10.1093/cercor/bhy046.

17.

Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors.

Katchalski T, Case T, Kim KY, Ramachandra R, Bushong EA, Deerinck TJ, Haberl MG, Mackey MR, Peltier S, Castillon GA, Fujikawa N, Lawrence AR, Ellisman MH.

Sci Rep. 2018 May 15;8(1):7553. doi: 10.1038/s41598-018-25099-z.

18.

High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues.

Tsang TK, Bushong EA, Boassa D, Hu J, Romoli B, Phan S, Dulcis D, Su CY, Ellisman MH.

Elife. 2018 May 11;7. pii: e35524. doi: 10.7554/eLife.35524.

19.

Subgroup Characteristics of Marine Methane-Oxidizing ANME-2 Archaea and Their Syntrophic Partners as Revealed by Integrated Multimodal Analytical Microscopy.

McGlynn SE, Chadwick GL, O'Neill A, Mackey M, Thor A, Deerinck TJ, Ellisman MH, Orphan VJ.

Appl Environ Microbiol. 2018 May 17;84(11). pii: e00399-18. doi: 10.1128/AEM.00399-18. Print 2018 Jun 1.

20.

Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes.

Shim MS, Kim KY, Bu JH, Nam HS, Jeong SW, Park TL, Ellisman MH, Weinreb RN, Ju WK.

Cell Death Dis. 2018 Feb 19;9(3):285. doi: 10.1038/s41419-017-0171-8.

21.

Mitochondrial dysfunction in iPSC-derived neurons of subjects with chronic mountain sickness.

Zhao H, Perkins G, Yao H, Callacondo D, Appenzeller O, Ellisman M, La Spada AR, Haddad GG.

J Appl Physiol (1985). 2018 Sep 1;125(3):832-840. doi: 10.1152/japplphysiol.00689.2017. Epub 2017 Dec 21.

PMID:
29357502
22.

Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis.

Lee JK, Enciso GA, Boassa D, Chander CN, Lou TH, Pairawan SS, Guo MC, Wan FYM, Ellisman MH, Sütterlin C, Tan M.

Nat Commun. 2018 Jan 3;9(1):45. doi: 10.1038/s41467-017-02432-0.

23.

High-performance serial block-face SEM of nonconductive biological samples enabled by focal gas injection-based charge compensation.

Deerinck TJ, Shone TM, Bushong EA, Ramachandra R, Peltier ST, Ellisman MH.

J Microsc. 2018 May;270(2):142-149. doi: 10.1111/jmi.12667. Epub 2017 Dec 1.

24.

Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage.

Petersen MA, Ryu JK, Chang KJ, Etxeberria A, Bardehle S, Mendiola AS, Kamau-Devers W, Fancy SPJ, Thor A, Bushong EA, Baeza-Raja B, Syme CA, Wu MD, Rios Coronado PE, Meyer-Franke A, Yahn S, Pous L, Lee JK, Schachtrup C, Lassmann H, Huang EJ, Han MH, Absinta M, Reich DS, Ellisman MH, Rowitch DH, Chan JR, Akassoglou K.

Neuron. 2017 Dec 6;96(5):1003-1012.e7. doi: 10.1016/j.neuron.2017.10.008. Epub 2017 Nov 2.

25.

Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections.

Churas C, Perez AJ, Hakozaki H, Wong W, Lee D, Peltier ST, Ellisman MH.

Bioinformatics. 2017 Oct 1;33(19):3145-3147. doi: 10.1093/bioinformatics/btx376.

26.

Correlative Microscopy Combining Secondary Ion Mass Spectrometry and Electron Microscopy: Comparison of Intensity-Hue-Saturation and Laplacian Pyramid Methods for Image Fusion.

Vollnhals F, Audinot JN, Wirtz T, Mercier-Bonin M, Fourquaux I, Schroeppel B, Kraushaar U, Lev-Ram V, Ellisman MH, Eswara S.

Anal Chem. 2017 Oct 17;89(20):10702-10710. doi: 10.1021/acs.analchem.7b01256. Epub 2017 Sep 29.

PMID:
28901122
27.

Sub-mitochondrial localization of the genetic-tagged mitochondrial intermembrane space-bridging components Mic19, Mic60 and Sam50.

Sastri M, Darshi M, Mackey M, Ramachandra R, Ju S, Phan S, Adams S, Stein K, Douglas CR, Kim JJ, Ellisman MH, Taylor SS, Perkins GA.

J Cell Sci. 2017 Oct 1;130(19):3248-3260. doi: 10.1242/jcs.201400. Epub 2017 Aug 14.

28.

Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells.

Martell JD, Deerinck TJ, Lam SS, Ellisman MH, Ting AY.

Nat Protoc. 2017 Sep;12(9):1792-1816. doi: 10.1038/nprot.2017.065. Epub 2017 Aug 10.

29.

Microtubule-dependent ribosome localization in C. elegans neurons.

Noma K, Goncharov A, Ellisman MH, Jin Y.

Elife. 2017 Aug 2;6. pii: e26376. doi: 10.7554/eLife.26376.

30.

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.

Ou HD, Phan S, Deerinck TJ, Thor A, Ellisman MH, O'Shea CC.

Science. 2017 Jul 28;357(6349). pii: eaag0025. doi: 10.1126/science.aag0025.

31.

Pink1 and Parkin regulate Drosophila intestinal stem cell proliferation during stress and aging.

Koehler CL, Perkins GA, Ellisman MH, Jones DL.

J Cell Biol. 2017 Aug 7;216(8):2315-2327. doi: 10.1083/jcb.201610036. Epub 2017 Jun 29.

32.

Activity-dependent trafficking of lysosomes in dendrites and dendritic spines.

Goo MS, Sancho L, Slepak N, Boassa D, Deerinck TJ, Ellisman MH, Bloodgood BL, Patrick GN.

J Cell Biol. 2017 Aug 7;216(8):2499-2513. doi: 10.1083/jcb.201704068. Epub 2017 Jun 19.

33.

The cell of origin dictates the temporal course of neurofibromatosis-1 (Nf1) low-grade glioma formation.

Solga AC, Toonen JA, Pan Y, Cimino PJ, Ma Y, Castillon GA, Gianino SM, Ellisman MH, Lee DY, Gutmann DH.

Oncotarget. 2017 Jul 18;8(29):47206-47215. doi: 10.18632/oncotarget.17589.

34.

Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission.

Sando R, Bushong E, Zhu Y, Huang M, Considine C, Phan S, Ju S, Uytiepo M, Ellisman M, Maximov A.

Neuron. 2017 Apr 19;94(2):312-321.e3. doi: 10.1016/j.neuron.2017.03.047.

35.

Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods.

Wan X, Katchalski T, Churas C, Ghosh S, Phan S, Lawrence A, Hao Y, Zhou Z, Chen R, Chen Y, Zhang F, Ellisman MH.

J Struct Biol. 2017 May;198(2):103-115. doi: 10.1016/j.jsb.2017.04.002. Epub 2017 Apr 6.

36.

Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.

Falkenberg CV, Azeloglu EU, Stothers M, Deerinck TJ, Chen Y, He JC, Ellisman MH, Hone JC, Iyengar R, Loew LM.

PLoS Comput Biol. 2017 Mar 16;13(3):e1005433. doi: 10.1371/journal.pcbi.1005433. eCollection 2017 Mar.

37.

Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells.

Han S, Udeshi ND, Deerinck TJ, Svinkina T, Ellisman MH, Carr SA, Ting AY.

Cell Chem Biol. 2017 Mar 16;24(3):404-414. doi: 10.1016/j.chembiol.2017.02.002. Epub 2017 Feb 23.

38.

Parkinson Sac Domain Mutation in Synaptojanin 1 Impairs Clathrin Uncoating at Synapses and Triggers Dystrophic Changes in Dopaminergic Axons.

Cao M, Wu Y, Ashrafi G, McCartney AJ, Wheeler H, Bushong EA, Boassa D, Ellisman MH, Ryan TA, De Camilli P.

Neuron. 2017 Feb 22;93(4):882-896.e5. doi: 10.1016/j.neuron.2017.01.019.

39.

Ultrastructural evidence for synaptic scaling across the wake/sleep cycle.

de Vivo L, Bellesi M, Marshall W, Bushong EA, Ellisman MH, Tononi G, Cirelli C.

Science. 2017 Feb 3;355(6324):507-510. doi: 10.1126/science.aah5982.

40.

A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance.

Hammerling BC, Najor RH, Cortez MQ, Shires SE, Leon LJ, Gonzalez ER, Boassa D, Phan S, Thor A, Jimenez RE, Li H, Kitsis RN, Dorn GW II, Sadoshima J, Ellisman MH, Gustafsson ÅB.

Nat Commun. 2017 Jan 30;8:14050. doi: 10.1038/ncomms14050.

41.

Isoform-specific subcellular localization and function of protein kinase A identified by mosaic imaging of mouse brain.

Ilouz R, Lev-Ram V, Bushong EA, Stiles TL, Friedmann-Morvinski D, Douglas C, Goldberg JL, Ellisman MH, Taylor SS.

Elife. 2017 Jan 12;6. pii: e17681. doi: 10.7554/eLife.17681.

42.

Proteolipid protein-deficient myelin promotes axonal mitochondrial dysfunction via altered metabolic coupling.

Yin X, Kidd GJ, Ohno N, Perkins GA, Ellisman MH, Bastian C, Brunet S, Baltan S, Trapp BD.

J Cell Biol. 2016 Nov 21;215(4):531-542.

43.

High resolution three-dimensional reconstruction of fibrotic skeletal muscle extracellular matrix.

Gillies AR, Chapman MA, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL.

J Physiol. 2017 Feb 15;595(4):1159-1171. doi: 10.1113/JP273376. Epub 2016 Dec 14.

44.

Multicolor Electron Microscopy for Simultaneous Visualization of Multiple Molecular Species.

Adams SR, Mackey MR, Ramachandra R, Palida Lemieux SF, Steinbach P, Bushong EA, Butko MT, Giepmans BNG, Ellisman MH, Tsien RY.

Cell Chem Biol. 2016 Nov 17;23(11):1417-1427. doi: 10.1016/j.chembiol.2016.10.006. Epub 2016 Nov 3.

45.

Consequences of excessive plasticity in the hippocampus induced by perinatal asphyxia.

Saraceno GE, Caceres LG, Guelman LR, Castilla R, Udovin LD, Ellisman MH, Brocco MA, Capani F.

Exp Neurol. 2016 Dec;286:116-123. doi: 10.1016/j.expneurol.2016.08.017. Epub 2016 Aug 27.

PMID:
27578426
46.

Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images.

Bouwer JC, Deerinck TJ, Bushong E, Astakhov V, Ramachandra R, Peltier ST, Ellisman MH.

Adv Struct Chem Imaging. 2017;2(1):11. Epub 2016 Sep 15.

47.
48.

Tuning PAK Activity to Rescue Abnormal Myelin Permeability in HNPP.

Hu B, Arpag S, Zhang X, Möbius W, Werner H, Sosinsky G, Ellisman M, Zhang Y, Hamilton A, Chernoff J, Li J.

PLoS Genet. 2016 Sep 1;12(9):e1006290. doi: 10.1371/journal.pgen.1006290. eCollection 2016 Sep.

49.

Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts.

Loh KH, Stawski PS, Draycott AS, Udeshi ND, Lehrman EK, Wilton DK, Svinkina T, Deerinck TJ, Ellisman MH, Stevens B, Carr SA, Ting AY.

Cell. 2016 Aug 25;166(5):1295-1307.e21. doi: 10.1016/j.cell.2016.07.041.

50.

3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography.

Phan S, Boassa D, Nguyen P, Wan X, Lanman J, Lawrence A, Ellisman MH.

Adv Struct Chem Imaging. 2017;2:8. doi: 10.1186/s40679-016-0021-2. Epub 2016 Jun 28.

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