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Items: 42

1.

Improving the value of public RNA-seq expression data by phenotype prediction.

Ellis SE, Collado-Torres L, Jaffe A, Leek JT.

Nucleic Acids Res. 2018 May 18;46(9):e54. doi: 10.1093/nar/gky102.

2.

Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder.

Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD.

Nat Commun. 2017 Oct 24;8(1):1011. doi: 10.1038/s41467-017-00868-y.

3.

Reproducible RNA-seq analysis using recount2.

Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT.

Nat Biotechnol. 2017 Apr 11;35(4):319-321. doi: 10.1038/nbt.3838. No abstract available.

PMID:
28398307
4.

Exaggerated CpH methylation in the autism-affected brain.

Ellis SE, Gupta S, Moes A, West AB, Arking DE.

Mol Autism. 2017 Feb 17;8:6. doi: 10.1186/s13229-017-0119-y. eCollection 2017.

5.

The Anthropocene Biosphere: Supporting 'Open Interdisciplinarity' through Blogging.

Trachtenberg ZM, Burns TJ, de Beurs K, Ellis SE, Gates KK, Hoagland BW, Kelly JF, Neeson TM, Randall AR, Schlupp I, Soppelsa PS, Soreghan GS, Zeigler JJ.

Trends Ecol Evol. 2017 Jan;32(1):1-3. doi: 10.1016/j.tree.2016.10.018. Epub 2016 Nov 21.

PMID:
27884485
6.

Impaired mammary development in tamoxifen-treated prepubertal heifers is associated with altered development and morphology of myoepithelial cells.

Tucker HLM, Beaudry KL, Parsons CLM, Ellis SE, Akers RM.

J Dairy Sci. 2016 Dec;99(12):10093-10101. doi: 10.3168/jds.2016-11550. Epub 2016 Oct 13.

PMID:
27743672
7.

Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia.

Ellis SE, Panitch R, West AB, Arking DE.

Transl Psychiatry. 2016 May 24;6:e817. doi: 10.1038/tp.2016.87.

8.

Severe refractory hypertension during shoulder arthroscopy.

Abrons RO, Ellis SE.

Saudi J Anaesth. 2016 Apr-Jun;10(2):236-7. doi: 10.4103/1658-354X.168834.

9.

Localization and quantitation of macrophages, mast cells, and eosinophils in the developing bovine mammary gland.

Beaudry KL, Parsons CL, Ellis SE, Akers RM.

J Dairy Sci. 2016 Jan;99(1):796-804. doi: 10.3168/jds.2015-9972. Epub 2015 Nov 5.

PMID:
26547646
10.

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism.

Gupta S, Ellis SE, Ashar FN, Moes A, Bader JS, Zhan J, West AB, Arking DE.

Nat Commun. 2014 Dec 10;5:5748. doi: 10.1038/ncomms6748.

11.

Ovariectomy in young prepubertal dairy heifers causes complete suppression of mammary progesterone receptors.

Velayudhan BT, Huderson BP, Ellis SE, Parsons CL, Hovey RC, Rowson AR, Akers RM.

Domest Anim Endocrinol. 2015 Apr;51:8-18. doi: 10.1016/j.domaniend.2014.10.002. Epub 2014 Nov 7.

PMID:
25460067
12.

Transcriptional regulators transforming growth factor-β1 and estrogen-related receptor-α identified as putative mediators of calf rumen epithelial tissue development and function during weaning.

Connor EE, Baldwin RL 6th, Walker MP, Ellis SE, Li C, Kahl S, Chung H, Li RW.

J Dairy Sci. 2014 Jul;97(7):4193-207. doi: 10.3168/jds.2013-7471. Epub 2014 Apr 24.

PMID:
24767884
13.

RNA-Seq optimization with eQTL gold standards.

Ellis SE, Gupta S, Ashar FN, Bader JS, West AB, Arking DE.

BMC Genomics. 2013 Dec 17;14:892. doi: 10.1186/1471-2164-14-892.

14.

Effect of summer forage species grazed during finishing on animal performance, carcass quality, and meat quality.

Schmidt JR, Miller MC, Andrae JG, Ellis SE, Duckett SK.

J Anim Sci. 2013 Sep;91(9):4451-61. doi: 10.2527/jas.2012-5405. Epub 2013 Jul 3.

PMID:
23825343
15.

Comparative aspects of mammary gland development and homeostasis.

Capuco AV, Ellis SE.

Annu Rev Anim Biosci. 2013 Jan;1:179-202. doi: 10.1146/annurev-animal-031412-103632. Epub 2013 Jan 3. Review.

PMID:
25387016
16.

Effect of staged ovariectomy on measures of mammary growth and development in prepubertal dairy heifers.

Velayudhan BT, Huderson BP, McGilliard ML, Jiang H, Ellis SE, Akers RM.

Animal. 2012 Jun;6(6):941-51. doi: 10.1017/S1751731111002333.

PMID:
22558965
17.

Growth and development of the mammary glands of livestock: a veritable barnyard of opportunities.

Rowson AR, Daniels KM, Ellis SE, Hovey RC.

Semin Cell Dev Biol. 2012 Jul;23(5):557-66. doi: 10.1016/j.semcdb.2012.03.018. Epub 2012 Apr 3. Review.

PMID:
22504021
18.

Effect of exogenous somatotropin in Holstein calves on mammary gland composition and proliferation.

Huderson BP, Velayudhan BT, Pearson RE, Ellis SE, Akers RM.

J Dairy Sci. 2011 Oct;94(10):5005-16. doi: 10.3168/jds.2011-4229.

PMID:
21943751
19.

Phage-display library biopanning as a novel approach to identifying nematode vaccine antigens.

Ellis SE, Newlands GF, Nisbet AJ, Matthews JB.

Parasite Immunol. 2012 May;34(5):285-95. doi: 10.1111/j.1365-3024.2011.01317.x. Review.

20.

Characterization of glucagon-like peptide 2 pathway member expression in bovine gastrointestinal tract.

Connor EE, Baldwin RL 6th, Capuco AV, Evock-Clover CM, Ellis SE, Sciabica KS.

J Dairy Sci. 2010 Nov;93(11):5167-78. doi: 10.3168/jds.2010-3205.

PMID:
20965332
21.

Effects of ovariectomy in prepubertal goats.

Dessauge F, Finot L, Wiart S, Aubry JM, Ellis SE.

J Physiol Pharmacol. 2009 Oct;60 Suppl 3:127-33.

PMID:
19996493
22.

Detection of porcine sperm microRNAs using a heterologous microRNA microarray and reverse transcriptase polymerase chain reaction.

Curry E, Ellis SE, Pratt SL.

Mol Reprod Dev. 2009 Mar;76(3):218-9. doi: 10.1002/mrd.20980. No abstract available.

PMID:
19012322
23.

Shwachman Diamond syndrome-phenotypes and genotypes: when clinical research informs biology.

Lipton JM, Ellis SE, Vlachos A.

Pediatr Blood Cancer. 2008 Oct;51(4):449-50. doi: 10.1002/pbc.21705. No abstract available.

PMID:
18661494
24.

Influence of supramammary lymph node extract on in vitro cell proliferation.

Duffy DM, Garrett SM, Ellis SE, Scott TR.

Cell Prolif. 2008 Apr;41(2):299-309. doi: 10.1111/j.1365-2184.2008.00521.x.

PMID:
18336474
25.

In vitro regulation of adipogenesis: tunable engineered tissues.

Yang CC, Ellis SE, Xu F, Burg KJ.

J Tissue Eng Regen Med. 2007 Mar-Apr;1(2):146-53.

PMID:
18038403
26.

Mammary response to exogenous prolactin or frequent milking during early lactation in dairy cows.

Wall EH, Crawford HM, Ellis SE, Dahl GE, McFadden TB.

J Dairy Sci. 2006 Dec;89(12):4640-8.

PMID:
17106096
27.
28.

Ovarian and IGF-I axis control of mammary development in prepubertal heifers.

Akers RM, Ellis SE, Berry SD.

Domest Anim Endocrinol. 2005 Aug;29(2):259-67. Epub 2005 Apr 7. Review.

PMID:
15998499
29.

Exposure to short day photoperiod during the dry period enhances mammary growth in dairy cows.

Wall EH, Auchtung TL, Dahl GE, Ellis SE, McFadden TB.

J Dairy Sci. 2005 Jun;88(6):1994-2003.

PMID:
15905429
30.

Lactation persistency: insights from mammary cell proliferation studies.

Capuco AV, Ellis SE, Hale SA, Long E, Erdman RA, Zhao X, Paape MJ.

J Anim Sci. 2003;81 Suppl 3:18-31. Review.

PMID:
15000403
31.

Diabetes patient education: a meta-analysis and meta-regression.

Ellis SE, Speroff T, Dittus RS, Brown A, Pichert JW, Elasy TA.

Patient Educ Couns. 2004 Jan;52(1):97-105.

PMID:
14729296
32.

Mammary epithelial proliferation and estrogen receptor alpha expression in prepubertal heifers: effects of ovariectomy and growth hormone.

Berry SD, Jobst PM, Ellis SE, Howard RD, Capuco AV, Akers RM.

J Dairy Sci. 2003 Jun;86(6):2098-105.

PMID:
12836946
33.

Influenza- and respiratory syncytial virus-associated morbidity and mortality in the nursing home population.

Ellis SE, Coffey CS, Mitchel EF Jr, Dittus RS, Griffin MR.

J Am Geriatr Soc. 2003 Jun;51(6):761-7.

PMID:
12757561
34.

Exercise and glycemic control in diabetes.

Ellis SE, Elasy TA.

JAMA. 2001 Dec 19;286(23):2941-2. No abstract available.

PMID:
11743825
35.

A taxonomy for diabetes educational interventions.

Elasy TA, Ellis SE, Brown A, Pichert JW.

Patient Educ Couns. 2001 May;43(2):121-7. Review.

PMID:
11369145
36.

Contribution of insulin-like growth factor (IGF)-I and IGF-binding protein-3 to mitogenic activity in bovine mammary extracts and serum.

Weber MS, Purup S, Vestergaard M, Ellis SE, Scndergård-Andersen J, Akers RM, Sejrsen K.

J Endocrinol. 1999 Jun;161(3):365-73.

PMID:
10333539
37.

Hyperosmolarity and acidosis in diabetes mellitus: a three-year experience in Rhode Island.

Wachtel TJ, Tetu-Mouradjian LM, Goldman DL, Ellis SE, O'Sullivan PS.

J Gen Intern Med. 1991 Nov-Dec;6(6):495-502.

PMID:
1765864
38.

An epidemiologic study of the risks associated with peripheral intravenous catheters.

Tager IB, Ginsberg MB, Ellis SE, Walsh NE, Dupont I, Simchen E, Faich GA.

Am J Epidemiol. 1983 Dec;118(6):839-51.

PMID:
6650485
39.

The epidemiology of diabetic acidosis: a population-based study.

Faich GA, Fishbein HA, Ellis SE.

Am J Epidemiol. 1983 May;117(5):551-8.

PMID:
6405612
40.

Incidence and hospitalization patterns of insulin-dependent diabetes mellitus.

Fishbein HA, Faich GA, Ellis SE.

Diabetes Care. 1982 Nov-Dec;5(6):630-3.

PMID:
6985453
41.

Chlorpromazine inhibition of granulocyte superoxide production.

Cohen HJ, Chovaniec ME, Ellis SE.

Blood. 1980 Jul;56(1):23-9.

42.

A case of tick paralysis in a dog.

Burt AD, Gammie JS, Ellis SE.

Can Vet J. 1978 Dec;19(12):347. No abstract available.

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