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Items: 1 to 50 of 186


Optimization of interstrand interactions enables burn detection with a collagen-mimetic peptide.

Dones JM, Tanrikulu IC, Chacko JV, Schroeder AB, Hoang TT, Gibson ALF, Eliceiri KW, Raines RT.

Org Biomol Chem. 2019 Nov 13. doi: 10.1039/c9ob01839e. [Epub ahead of print]


Quantitative Histopathology of Stained Tissues using Color Spatial Light Interference Microscopy (cSLIM).

Majeed H, Keikhosravi A, Kandel ME, Nguyen TH, Liu Y, Kajdacsy-Balla A, Tangella K, Eliceiri KW, Popescu G.

Sci Rep. 2019 Oct 11;9(1):14679. doi: 10.1038/s41598-019-50143-x.


NAD(P)H fluorescence lifetime measurements in fixed biological tissues.

Chacko JV, Eliceiri KW.

Methods Appl Fluoresc. 2019 Oct 10;7(4):044005. doi: 10.1088/2050-6120/ab47e5.


A multiscale Mueller polarimetry module for a stereo zoom microscope.

Gribble A, Pinkert MA, Westreich J, Liu Y, Keikhosravi A, Khorasani M, Nofech-Mozes S, Eliceiri KW, Vitkin A.

Biomed Eng Lett. 2019 Jun 20;9(3):339-349. doi: 10.1007/s13534-019-00116-w. eCollection 2019 Aug.


PGC-1a integrates a metabolism and growth network linked to caloric restriction.

Miller KN, Clark JP, Martin SA, Howell PR, Burhans MS, Haws SA, Johnson NB, Rhoads TW, Pavelec DM, Eliceiri KW, Roopra AS, Ntambi JM, Denu JM, Parks BW, Anderson RM.

Aging Cell. 2019 Oct;18(5):e12999. doi: 10.1111/acel.12999. Epub 2019 Jul 3.


Distinct inflammatory and wound healing responses to complex caudal fin injuries of larval zebrafish.

Miskolci V, Squirrell J, Rindy J, Vincent W, Sauer JD, Gibson A, Eliceiri KW, Huttenlocher A.

Elife. 2019 Jul 1;8. pii: e45976. doi: 10.7554/eLife.45976.


Scientific Community Image Forum: A discussion forum for scientific image software.

Rueden CT, Ackerman J, Arena ET, Eglinger J, Cimini BA, Goodman A, Carpenter AE, Eliceiri KW.

PLoS Biol. 2019 Jun 19;17(6):e3000340. doi: 10.1371/journal.pbio.3000340. eCollection 2019 Jun.


Collagen organization of renal cell carcinoma differs between low and high grade tumors.

Best SL, Liu Y, Keikhosravi A, Drifka CR, Woo KM, Mehta GS, Altwegg M, Thimm TN, Houlihan M, Bredfeldt JS, Abel EJ, Huang W, Eliceiri KW.

BMC Cancer. 2019 May 23;19(1):490. doi: 10.1186/s12885-019-5708-z.


Correction: Mechanical signals regulate and activate SNAIL1 protein to control the fibrogenic response of cancer-associated fibroblasts (doi:10.1242/jcs.180539).

Zhang K, Grither WR, Van Hove S, Biswas H, Ponik SM, Eliceiri KW, Keely PJ, Longmore GD.

J Cell Sci. 2019 May 2;132(9). pii: jcs232348. doi: 10.1242/jcs.232348. No abstract available.


Spatially Adaptive Colocalization Analysis in Dual-Color Fluorescence Microscopy.

Wang S, Arena ET, Becker JT, Bement WM, Sherer NM, Eliceiri KW, Yuan M.

IEEE Trans Image Process. 2019 Apr 4. doi: 10.1109/TIP.2019.2909194. [Epub ahead of print]


Cortex-wide neural interfacing via transparent polymer skulls.

Ghanbari L, Carter RE, Rynes ML, Dominguez J, Chen G, Naik A, Hu J, Sagar MAK, Haltom L, Mossazghi N, Gray MM, West SL, Eliceiri KW, Ebner TJ, Kodandaramaiah SB.

Nat Commun. 2019 Apr 2;10(1):1500. doi: 10.1038/s41467-019-09488-0.


A novel bioreactor for combined magnetic resonance spectroscopy and optical imaging of metabolism in 3D cell cultures.

Cox BL, Erickson-Bhatt S, Szulczewski JM, Squirrell JM, Ludwig KD, Macdonald EB, Swader R, Ponik SM, Eliceiri KW, Fain SB.

Magn Reson Med. 2019 May;81(5):3379-3391. doi: 10.1002/mrm.27644. Epub 2019 Jan 16.


Quantitative second harmonic generation imaging of leporine, canine, and porcine vocal fold collagen.

Devine EE, Liu Y, Keikhosravi A, Eliceiri KW, Jiang JJ.

Laryngoscope. 2019 Nov;129(11):2549-2556. doi: 10.1002/lary.27782. Epub 2019 Jan 9.


Convolutional neural networks for whole slide image superresolution.

Mukherjee L, Keikhosravi A, Bui D, Eliceiri KW.

Biomed Opt Express. 2018 Oct 12;9(11):5368-5386. doi: 10.1364/BOE.9.005368. eCollection 2018 Nov 1.


Autofluorescence lifetime imaging of cellular metabolism: Sensitivity toward cell density, pH, intracellular, and intercellular heterogeneity.

Chacko JV, Eliceiri KW.

Cytometry A. 2019 Jan;95(1):56-69. doi: 10.1002/cyto.a.23603. Epub 2018 Oct 8.


Imaging the Cardiac Extracellular Matrix.

Pinkert MA, Hortensius RA, Ogle BM, Eliceiri KW.

Adv Exp Med Biol. 2018;1098:21-44. doi: 10.1007/978-3-319-97421-7_2. Review.


Targeted matrisome analysis identifies thrombospondin-2 and tenascin-C in aligned collagen stroma from invasive breast carcinoma.

Tomko LA, Hill RC, Barrett A, Szulczewski JM, Conklin MW, Eliceiri KW, Keely PJ, Hansen KC, Ponik SM.

Sci Rep. 2018 Aug 28;8(1):12941. doi: 10.1038/s41598-018-31126-w.


Chemically Derived Kirigami of WSe2.

Cai L, Shearer MJ, Zhao Y, Hu Z, Wang F, Zhang Y, Eliceiri KW, Hamers RJ, Yan W, Wei S, Tang M, Jin S.

J Am Chem Soc. 2018 Sep 5;140(35):10980-10987. doi: 10.1021/jacs.8b03399. Epub 2018 Aug 22.


Void spot assay procedural optimization and software for rapid and objective quantification of rodent voiding function, including overlapping urine spots.

Wegner KA, Abler LL, Oakes SR, Mehta GS, Ritter KE, Hill WG, Zwaans BM, Lamb LE, Wang Z, Bjorling DE, Ricke WA, Macoska J, Marker PC, Southard-Smith EM, Eliceiri KW, Vezina CM.

Am J Physiol Renal Physiol. 2018 Oct 1;315(4):F1067-F1080. doi: 10.1152/ajprenal.00245.2018. Epub 2018 Jul 4.


Imaging Vacuolar Anthocyanins with Fluorescence Lifetime Microscopy (FLIM).

Chanoca A, Burkel B, Grotewold E, Eliceiri KW, Otegui MS.

Methods Mol Biol. 2018;1789:131-141. doi: 10.1007/978-1-4939-7856-4_10.


GSK3β Regulates Brain Energy Metabolism.

Martin SA, Souder DC, Miller KN, Clark JP, Sagar AK, Eliceiri KW, Puglielli L, Beasley TM, Anderson RM.

Cell Rep. 2018 May 15;23(7):1922-1931.e4. doi: 10.1016/j.celrep.2018.04.045.


Quantification of Collagen Organization after Nerve Repair.

Israel JS, Esquibel CR, Dingle AM, Liu Y, Keikhosravi A, Pisaniello JA, Hesse MA, Brodnick SK, Novello J, Krugner-Higby L, Williams JC, Eliceiri KW, Poore SO.

Plast Reconstr Surg Glob Open. 2017 Dec 11;5(12):e1586. doi: 10.1097/GOX.0000000000001586. eCollection 2017 Dec.


The Presence of Cyclooxygenase 2, Tumor-Associated Macrophages, and Collagen Alignment as Prognostic Markers for Invasive Breast Carcinoma Patients.

Esbona K, Yi Y, Saha S, Yu M, Van Doorn RR, Conklin MW, Graham DS, Wisinski KB, Ponik SM, Eliceiri KW, Wilke LG, Keely PJ.

Am J Pathol. 2018 Mar;188(3):559-573. doi: 10.1016/j.ajpath.2017.10.025.


An open source, 3D printed preclinical MRI phantom for repeated measures of contrast agents and reference standards.

Cox BL, Ludwig KD, Adamson EB, Eliceiri KW, Fain SB.

Biomed Phys Eng Express. 2018 Mar;4(2). pii: 027005. doi: 10.1088/2057-1976/aa9491. Epub 2018 Jan 25.


Review of quantitative multiscale imaging of breast cancer.

Pinkert MA, Salkowski LR, Keely PJ, Hall TJ, Block WF, Eliceiri KW.

J Med Imaging (Bellingham). 2018 Jan;5(1):010901. doi: 10.1117/1.JMI.5.1.010901. Epub 2018 Jan 22. Review.


Damage-induced reactive oxygen species regulate vimentin and dynamic collagen-based projections to mediate wound repair.

LeBert D, Squirrell JM, Freisinger C, Rindy J, Golenberg N, Frecentese G, Gibson A, Eliceiri KW, Huttenlocher A.

Elife. 2018 Jan 16;7. pii: e30703. doi: 10.7554/eLife.30703.


ImageJ2: ImageJ for the next generation of scientific image data.

Rueden CT, Schindelin J, Hiner MC, DeZonia BE, Walter AE, Arena ET, Eliceiri KW.

BMC Bioinformatics. 2017 Nov 29;18(1):529. doi: 10.1186/s12859-017-1934-z.


Long-term Live Imaging Device for Improved Experimental Manipulation of Zebrafish Larvae.

Huemer K, Squirrell JM, Swader R, Pelkey K, LeBert DC, Huttenlocher A, Eliceiri KW.

J Vis Exp. 2017 Oct 27;(128). doi: 10.3791/56340.


Collagen Alignment as a Predictor of Recurrence after Ductal Carcinoma In Situ.

Conklin MW, Gangnon RE, Sprague BL, Van Gemert L, Hampton JM, Eliceiri KW, Bredfeldt JS, Liu Y, Surachaicharn N, Newcomb PA, Friedl A, Keely PJ, Trentham-Dietz A.

Cancer Epidemiol Biomarkers Prev. 2018 Feb;27(2):138-145. doi: 10.1158/1055-9965.EPI-17-0720. Epub 2017 Nov 15.


FunImageJ: a Lisp framework for scientific image processing.

Harrington KIS, Rueden CT, Eliceiri KW.

Bioinformatics. 2018 Mar 1;34(5):899-900. doi: 10.1093/bioinformatics/btx710.


Automated and Robust Quantification of Colocalization in Dual-Color Fluorescence Microscopy: A Nonparametric Statistical Approach.

Shulei Wang, Arena ET, Eliceiri KW, Ming Yuan.

IEEE Trans Image Process. 2018 Feb;27(2):622-636. doi: 10.1109/TIP.2017.2763821. Epub 2017 Oct 17.


Neuroendocrine Tumor-Targeted Upconversion Nanoparticle-Based Micelles for Simultaneous NIR-Controlled Combination Chemotherapy and Photodynamic Therapy, and Fluorescence Imaging.

Chen G, Jaskula-Sztul R, Esquibel CR, Lou I, Zheng Q, Dammalapati A, Harrison A, Eliceiri KW, Tang W, Chen H, Gong S.

Adv Funct Mater. 2017 Feb 23;27(8). pii: 1604671. doi: 10.1002/adfm.201604671. Epub 2017 Jan 17.


Quantification of collagen organization in histopathology samples using liquid crystal based polarization microscopy.

Keikhosravi A, Liu Y, Drifka C, Woo KM, Verma A, Oldenbourg R, Eliceiri KW.

Biomed Opt Express. 2017 Aug 29;8(9):4243-4256. doi: 10.1364/BOE.8.004243. eCollection 2017 Sep 1.


Methods for Quantifying Fibrillar Collagen Alignment.

Liu Y, Keikhosravi A, Mehta GS, Drifka CR, Eliceiri KW.

Methods Mol Biol. 2017;1627:429-451. doi: 10.1007/978-1-4939-7113-8_28.


Fluorescence of Picrosirius Red Multiplexed With Immunohistochemistry for the Quantitative Assessment of Collagen in Tissue Sections.

Wegner KA, Keikhosravi A, Eliceiri KW, Vezina CM.

J Histochem Cytochem. 2017 Aug;65(8):479-490. doi: 10.1369/0022155417718541. Epub 2017 Jul 10.


The Kinesin Adaptor Calsyntenin-1 Organizes Microtubule Polarity and Regulates Dynamics during Sensory Axon Arbor Development.

Lee TJ, Lee JW, Haynes EM, Eliceiri KW, Halloran MC.

Front Cell Neurosci. 2017 Apr 20;11:107. doi: 10.3389/fncel.2017.00107. eCollection 2017.


Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.

Arganda-Carreras I, Kaynig V, Rueden C, Eliceiri KW, Schindelin J, Cardona A, Sebastian Seung H.

Bioinformatics. 2017 Aug 1;33(15):2424-2426. doi: 10.1093/bioinformatics/btx180.


Selected mitochondrial DNA landscapes activate the SIRT3 axis of the UPRmt to promote metastasis.

Kenny TC, Hart P, Ragazzi M, Sersinghe M, Chipuk J, Sagar MAK, Eliceiri KW, LaFramboise T, Grandhi S, Santos J, Riar AK, Papa L, D'Aurello M, Manfredi G, Bonini MG, Germain D.

Oncogene. 2017 Aug;36(31):4393-4404. doi: 10.1038/onc.2017.52. Epub 2017 Apr 3.


Enriching Islet Phospholipids With Eicosapentaenoic Acid Reduces Prostaglandin E2 Signaling and Enhances Diabetic β-Cell Function.

Neuman JC, Schaid MD, Brill AL, Fenske RJ, Kibbe CR, Fontaine DA, Sdao SM, Brar HK, Connors KM, Wienkes HN, Eliceiri KW, Merrins MJ, Davis DB, Kimple ME.

Diabetes. 2017 Jun;66(6):1572-1585. doi: 10.2337/db16-1362. Epub 2017 Feb 13.


Complex and Noncentrosymmetric Stacking of Layered Metal Dichalcogenide Materials Created by Screw Dislocations.

Shearer MJ, Samad L, Zhang Y, Zhao Y, Puretzky A, Eliceiri KW, Wright JC, Hamers RJ, Jin S.

J Am Chem Soc. 2017 Mar 8;139(9):3496-3504. doi: 10.1021/jacs.6b12559. Epub 2017 Feb 21.


Stromal alterations in ovarian cancers via wavelength dependent Second Harmonic Generation microscopy and optical scattering.

Tilbury KB, Campbell KR, Eliceiri KW, Salih SM, Patankar M, Campagnola PJ.

BMC Cancer. 2017 Feb 6;17(1):102. doi: 10.1186/s12885-017-3090-2.


Aging and caloric restriction impact adipose tissue, adiponectin, and circulating lipids.

Miller KN, Burhans MS, Clark JP, Howell PR, Polewski MA, DeMuth TM, Eliceiri KW, Lindstrom MJ, Ntambi JM, Anderson RM.

Aging Cell. 2017 Jun;16(3):497-507. doi: 10.1111/acel.12575. Epub 2017 Feb 3.


Elevated collagen-I augments tumor progressive signals, intravasation and metastasis of prolactin-induced estrogen receptor alpha positive mammary tumor cells.

Barcus CE, O'Leary KA, Brockman JL, Rugowski DE, Liu Y, Garcia N, Yu M, Keely PJ, Eliceiri KW, Schuler LA.

Breast Cancer Res. 2017 Jan 19;19(1):9. doi: 10.1186/s13058-017-0801-1.


Beyond the margins: real-time detection of cancer using targeted fluorophores.

Zhang RR, Schroeder AB, Grudzinski JJ, Rosenthal EL, Warram JM, Pinchuk AN, Eliceiri KW, Kuo JS, Weichert JP.

Nat Rev Clin Oncol. 2017 Jun;14(6):347-364. doi: 10.1038/nrclinonc.2016.212. Epub 2017 Jan 17. Review.


Fabrication approaches for the creation of physical models from microscopy data.

Cox BL, Schumacher N, Konieczny J, Reifschneider I, Mackie TR, Otegui MS, Eliceiri KW.

3D Print Med. 2017;3(1):2. doi: 10.1186/s41205-017-0011-6. Epub 2017 Feb 14.


Induction of fibroblast senescence generates a non-fibrogenic myofibroblast phenotype that differentially impacts on cancer prognosis.

Mellone M, Hanley CJ, Thirdborough S, Mellows T, Garcia E, Woo J, Tod J, Frampton S, Jenei V, Moutasim KA, Kabir TD, Brennan PA, Venturi G, Ford K, Herranz N, Lim KP, Clarke J, Lambert DW, Prime SS, Underwood TJ, Vijayanand P, Eliceiri KW, Woelk C, King EV, Gil J, Ottensmeier CH, Thomas GJ.

Aging (Albany NY). 2016 Dec 15;9(1):114-132. doi: 10.18632/aging.101127.


SHARPIN regulates collagen architecture and ductal outgrowth in the developing mouse mammary gland.

Peuhu E, Kaukonen R, Lerche M, Saari M, Guzmán C, Rantakari P, De Franceschi N, Wärri A, Georgiadou M, Jacquemet G, Mattila E, Virtakoivu R, Liu Y, Attieh Y, Silva KA, Betz T, Sundberg JP, Salmi M, Deugnier MA, Eliceiri KW, Ivaska J.

EMBO J. 2017 Jan 17;36(2):165-182. doi: 10.15252/embj.201694387. Epub 2016 Dec 14.


SCIFIO: an extensible framework to support scientific image formats.

Hiner MC, Rueden CT, Eliceiri KW.

BMC Bioinformatics. 2016 Dec 7;17(1):521.


Quantitating the cell: turning images into numbers with ImageJ.

Arena ET, Rueden CT, Hiner MC, Wang S, Yuan M, Eliceiri KW.

Wiley Interdiscip Rev Dev Biol. 2017 Mar;6(2). doi: 10.1002/wdev.260. Epub 2016 Dec 2. Review.


Diverse activities of viral cis-acting RNA regulatory elements revealed using multicolor, long-term, single-cell imaging.

Pocock GM, Zimdars LL, Yuan M, Eliceiri KW, Ahlquist P, Sherer NM.

Mol Biol Cell. 2017 Feb 1;28(3):476-487. doi: 10.1091/mbc.E16-08-0612. Epub 2016 Nov 30.

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