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Items: 1 to 50 of 84

1.

The nerve root sedimentation sign in diagnosis of lumbar spinal stenosis.

Piechota M, Król R, Elias DA, Wawrzynek W, Lekstan A.

Acta Radiol. 2018 Oct 3:284185118795322. doi: 10.1177/0284185118795322. [Epub ahead of print]

PMID:
30282482
2.

Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments.

Smith HJ, Zelaya AJ, De León KB, Chakraborty R, Elias DA, Hazen TC, Arkin AP, Cunningham AB, Fields MW.

FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy191.

3.

In situ decay of polyfluorinated benzoic acids under anaerobic conditions.

Paradis CJ, Moon JW, Elias DA, McKay LD, Hazen TC.

J Contam Hydrol. 2018 Oct;217:8-16. doi: 10.1016/j.jconhyd.2018.08.009. Epub 2018 Sep 5.

PMID:
30201555
4.

Quantitative Proteomic Analysis of Biological Processes and Responses of the Bacterium Desulfovibrio desulfuricans ND132 upon Deletion of Its Mercury Methylation Genes.

Qian C, Chen H, Johs A, Lu X, An J, Pierce EM, Parks JM, Elias DA, Hettich RL, Gu B.

Proteomics. 2018 Sep;18(17):e1700479. doi: 10.1002/pmic.201700479. Epub 2018 Aug 16.

PMID:
30009483
5.

Quantification of Mercury Bioavailability for Methylation Using Diffusive Gradient in Thin-Film Samplers.

Ndu U, Christensen GA, Rivera NA, Gionfriddo CM, Deshusses MA, Elias DA, Hsu-Kim H.

Environ Sci Technol. 2018 Aug 7;52(15):8521-8529. doi: 10.1021/acs.est.8b00647. Epub 2018 Jul 11.

6.

Robust Mercury Methylation across Diverse Methanogenic Archaea.

Gilmour CC, Bullock AL, McBurney A, Podar M, Elias DA.

MBio. 2018 Apr 10;9(2). pii: e02403-17. doi: 10.1128/mBio.02403-17.

7.

Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.

Christensen GA, Moon J, Veach AM, Mosher JJ, Wymore AM, van Nostrand JD, Zhou J, Hazen TC, Arkin AP, Elias DA.

PLoS One. 2018 Mar 20;13(3):e0194663. doi: 10.1371/journal.pone.0194663. eCollection 2018.

8.

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China.

Vishnivetskaya TA, Hu H, Van Nostrand JD, Wymore AM, Xu X, Qiu G, Feng X, Zhou J, Brown SD, Brandt CC, Podar M, Gu B, Elias DA.

Environ Sci Process Impacts. 2018 Apr 25;20(4):673-685. doi: 10.1039/c7em00558j.

PMID:
29504614
9.

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

He Z, Zhang P, Wu L, Rocha AM, Tu Q, Shi Z, Wu B, Qin Y, Wang J, Yan Q, Curtis D, Ning D, Van Nostrand JD, Wu L, Yang Y, Elias DA, Watson DB, Adams MWW, Fields MW, Alm EJ, Hazen TC, Adams PD, Arkin AP, Zhou J.

MBio. 2018 Feb 20;9(1). pii: e02435-17. doi: 10.1128/mBio.02435-17.

10.

Novel Semiquantitative Bone Marrow Oedema Score and Fracture Score for the Magnetic Resonance Imaging Assessment of the Active Charcot Foot in Diabetes.

Meacock L, Petrova NL, Donaldson A, Isaac A, Briody A, Ramnarine R, Edmonds ME, Elias DA.

J Diabetes Res. 2017;2017:8504137. doi: 10.1155/2017/8504137. Epub 2017 Nov 5.

11.

Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments.

Christensen GA, Somenahally AC, Moberly JG, Miller CM, King AJ, Gilmour CC, Brown SD, Podar M, Brandt CC, Brooks SC, Palumbo AV, Wall JD, Elias DA.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e01049-17. doi: 10.1128/AEM.01049-17. Print 2018 Feb 1.

12.

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

King AJ, Preheim SP, Bailey KL, Robeson MS 2nd, Roy Chowdhury T, Crable BR, Hurt RA Jr, Mehlhorn T, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, Lancaster WA, Poole F, Watson DB, W Fields M, Chandonia JM, Alm EJ, Zhou J, Adams MW, Hazen TC, Arkin AP, Elias DA.

Environ Sci Technol. 2017 Mar 7;51(5):2879-2889. doi: 10.1021/acs.est.6b04751. Epub 2017 Feb 10.

13.

Response to Comment on "Anaerobic Mercury Methylation and Demethylation by Geobacter Bemidjiensis Bem".

Lu X, Liu Y, Johs A, Zhao L, Wang T, Yang Z, Lin H, Elias DA, Pierce EM, Liang L, Barkay T, Gu B.

Environ Sci Technol. 2016 Sep 6;50(17):9800-1. doi: 10.1021/acs.est.6b03687. Epub 2016 Aug 12. No abstract available.

PMID:
27518209
14.

Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment.

Christensen GA, Wymore AM, King AJ, Podar M, Hurt RA Jr, Santillan EU, Soren A, Brandt CC, Brown SD, Palumbo AV, Wall JD, Gilmour CC, Elias DA.

Appl Environ Microbiol. 2016 Sep 16;82(19):6068-78. doi: 10.1128/AEM.01271-16. Print 2016 Oct 1.

15.

Near-Complete Genome Sequence of Clostridium paradoxum Strain JW-YL-7.

Lancaster WA, Utturkar SM, Poole FL, Klingeman DM, Elias DA, Adams MW, Brown SD.

Genome Announc. 2016 May 5;4(3). pii: e00229-16. doi: 10.1128/genomeA.00229-16.

16.

Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.

Kurczy ME, Forsberg EM, Thorgersen MP, Poole FL 2nd, Benton HP, Ivanisevic J, Tran ML, Wall JD, Elias DA, Adams MW, Siuzdak G.

ACS Chem Biol. 2016 Jun 17;11(6):1677-85. doi: 10.1021/acschembio.6b00082. Epub 2016 Apr 8.

17.

Anaerobic Mercury Methylation and Demethylation by Geobacter bemidjiensis Bem.

Lu X, Liu Y, Johs A, Zhao L, Wang T, Yang Z, Lin H, Elias DA, Pierce EM, Liang L, Barkay T, Gu B.

Environ Sci Technol. 2016 Apr 19;50(8):4366-73. doi: 10.1021/acs.est.6b00401. Epub 2016 Apr 7.

PMID:
27019098
18.

Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.

Shatsky M, Allen S, Gold BL, Liu NL, Juba TR, Reveco SA, Elias DA, Prathapam R, He J, Yang W, Szakal ED, Liu H, Singer ME, Geller JT, Lam BR, Saini A, Trotter VV, Hall SC, Fisher SJ, Brenner SE, Chhabra SR, Hazen TC, Wall JD, Witkowska HE, Biggin MD, Chandonia JM, Butland G.

Mol Cell Proteomics. 2016 May;15(5):1539-55. doi: 10.1074/mcp.M115.054692. Epub 2016 Feb 12.

19.

Global prevalence and distribution of genes and microorganisms involved in mercury methylation.

Podar M, Gilmour CC, Brandt CC, Soren A, Brown SD, Crable BR, Palumbo AV, Somenahally AC, Elias DA.

Sci Adv. 2015 Oct 9;1(9):e1500675. doi: 10.1126/sciadv.1500675. eCollection 2015 Oct.

20.

Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

De León KB, Utturkar SM, Camilleri LB, Elias DA, Arkin AP, Fields MW, Brown SD, Wall JD.

Genome Announc. 2015 Sep 24;3(5). pii: e01090-15. doi: 10.1128/genomeA.01090-15.

21.

Natural bacterial communities serve as quantitative geochemical biosensors.

Smith MB, Rocha AM, Smillie CS, Olesen SW, Paradis C, Wu L, Campbell JH, Fortney JL, Mehlhorn TL, Lowe KA, Earles JE, Phillips J, Techtmann SM, Joyner DC, Elias DA, Bailey KL, Hurt RA Jr, Preheim SP, Sanders MC, Yang J, Mueller MA, Brooks S, Watson DB, Zhang P, He Z, Dubinsky EA, Adams PD, Arkin AP, Fields MW, Zhou J, Alm EJ, Hazen TC.

MBio. 2015 May 12;6(3):e00326-15. doi: 10.1128/mBio.00326-15.

22.

Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation.

Smith SD, Bridou R, Johs A, Parks JM, Elias DA, Hurt RA Jr, Brown SD, Podar M, Wall JD.

Appl Environ Microbiol. 2015 May 1;81(9):3205-17. doi: 10.1128/AEM.00217-15. Epub 2015 Feb 27.

23.

Stoichiometry and temperature sensitivity of methanogenesis and CO2 production from saturated polygonal tundra in Barrow, Alaska.

Roy Chowdhury T, Herndon EM, Phelps TJ, Elias DA, Gu B, Liang L, Wullschleger SD, Graham DE.

Glob Chang Biol. 2015 Feb;21(2):722-37. doi: 10.1111/gcb.12762. Epub 2014 Nov 26.

PMID:
25308891
24.

Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.

Brown SD, Utturkar SM, Magnuson TS, Ray AE, Poole FL, Lancaster WA, Thorgersen MP, Adams MW, Elias DA.

Genome Announc. 2014 Sep 4;2(5). pii: e00881-14. doi: 10.1128/genomeA.00881-14.

25.

Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.

Hurt RA Jr, Robeson MS 2nd, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA.

PLoS One. 2014 Jul 17;9(7):e102826. doi: 10.1371/journal.pone.0102826. eCollection 2014.

26.

Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization.

Lancaster WA, Menon AL, Scott I, Poole FL, Vaccaro BJ, Thorgersen MP, Geller J, Hazen TC, Hurt RA Jr, Brown SD, Elias DA, Adams MW.

Metallomics. 2014 May;6(5):1004-13. doi: 10.1039/c4mt00050a.

PMID:
24706256
27.

Mechanisms of injury and CT findings in bowel and mesenteric trauma.

Khan I, Bew D, Elias DA, Lewis D, Meacock LM.

Clin Radiol. 2014 Jun;69(6):639-47. doi: 10.1016/j.crad.2014.01.021. Epub 2014 Mar 4. Review.

PMID:
24606835
28.

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities.

Somenahally AC, Mosher JJ, Yuan T, Podar M, Phelps TJ, Brown SD, Yang ZK, Hazen TC, Arkin AP, Palumbo AV, Van Nostrand JD, Zhou J, Elias DA.

PLoS One. 2013 Dec 23;8(12):e83909. doi: 10.1371/journal.pone.0083909. eCollection 2013.

29.

Mercury methylation by novel microorganisms from new environments.

Gilmour CC, Podar M, Bullock AL, Graham AM, Brown SD, Somenahally AC, Johs A, Hurt RA Jr, Bailey KL, Elias DA.

Environ Sci Technol. 2013 Oct 15;47(20):11810-20. doi: 10.1021/es403075t. Epub 2013 Sep 26.

PMID:
24024607
30.

Mercury reduction and cell-surface adsorption by Geobacter sulfurreducens PCA.

Hu H, Lin H, Zheng W, Rao B, Feng X, Liang L, Elias DA, Gu B.

Environ Sci Technol. 2013 Oct 1;47(19):10922-30. doi: 10.1021/es400527m. Epub 2013 Sep 10.

PMID:
24020841
31.

Draft genome sequences for three mercury-methylating, sulfate-reducing bacteria.

Brown SD, Hurt RA Jr, Gilmour CC, Elias DA.

Genome Announc. 2013 Aug 15;1(4). pii: e00618-13. doi: 10.1128/genomeA.00618-13.

32.

Imaging of plantar fascia and Achilles injuries undertaken at the London 2012 Olympics.

Elias DA, Carne A, Bethapudi S, Engebretsen L, Budgett R, O'Connor P.

Skeletal Radiol. 2013 Dec;42(12):1645-55. doi: 10.1007/s00256-013-1689-1. Epub 2013 Aug 1. Review.

PMID:
23903598
33.

Draft Genome Sequence for Desulfovibrio africanus Strain PCS.

Brown SD, Utturkar SM, Arkin AP, Deutschbauer AM, Elias DA, Hazen TC, Chakraborty R.

Genome Announc. 2013 Apr 11;1(2):e0014413. doi: 10.1128/genomeA.00144-13.

34.

The genetic basis for bacterial mercury methylation.

Parks JM, Johs A, Podar M, Bridou R, Hurt RA Jr, Smith SD, Tomanicek SJ, Qian Y, Brown SD, Brandt CC, Palumbo AV, Smith JC, Wall JD, Elias DA, Liang L.

Science. 2013 Mar 15;339(6125):1332-5. doi: 10.1126/science.1230667. Epub 2013 Feb 7.

35.

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA.

J Bacteriol. 2012 Sep;194(18):5147-8. doi: 10.1128/JB.01174-12.

36.

Detailed assessment of the kinetics of Hg-cell association, Hg methylation, and methylmercury degradation in several Desulfovibrio species.

Graham AM, Bullock AL, Maizel AC, Elias DA, Gilmour CC.

Appl Environ Microbiol. 2012 Oct;78(20):7337-46. Epub 2012 Aug 10.

37.

Sequencing intractable DNA to close microbial genomes.

Hurt RA Jr, Brown SD, Podar M, Palumbo AV, Elias DA.

PLoS One. 2012;7(7):e41295. doi: 10.1371/journal.pone.0041295. Epub 2012 Jul 31.

38.

A Streamlined Strategy for Biohydrogen Production with Halanaerobium hydrogeniformans, an Alkaliphilic Bacterium.

Begemann MB, Mormile MR, Sitton OC, Wall JD, Elias DA.

Front Microbiol. 2012 Mar 21;3:93. doi: 10.3389/fmicb.2012.00093. eCollection 2012.

39.

Role of morphological growth state and gene expression in Desulfovibrio africanus strain Walvis Bay mercury methylation.

Moberly JG, Miller CL, Brown SD, Biswas A, Brandt CC, Palumbo AV, Elias DA.

Environ Sci Technol. 2012 May 1;46(9):4926-32. doi: 10.1021/es3000933. Epub 2012 Apr 20.

PMID:
22500779
40.

The prevalence of cam-type femoroacetabular morphology in young adults and its effect on functional hip scores.

Tsitskaris K, Sharif K, Meacock LM, Bansal M, Ayis S, Li PL, Elias DA.

Hip Int. 2012 Jan-Feb;22(1):68-74. doi: 10.5301/HIP.2012.9074.

PMID:
22383323
41.

The value of ultrasound in assessing displacement of a medial clavicular physeal separation in an adolescent.

Deganello A, Meacock L, Tavakkolizadeh A, Sinha J, Elias DA.

Skeletal Radiol. 2012 Jan 31. [Epub ahead of print]

PMID:
22286661
42.

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Mosher JJ, Phelps TJ, Podar M, Hurt RA Jr, Campbell JH, Drake MM, Moberly JG, Schadt CW, Brown SD, Hazen TC, Arkin AP, Palumbo AV, Faybishenko BA, Elias DA.

Appl Environ Microbiol. 2012 Apr;78(7):2082-91. doi: 10.1128/AEM.07165-11. Epub 2012 Jan 20.

43.

Microbes in thawing permafrost: the unknown variable in the climate change equation.

Graham DE, Wallenstein MD, Vishnivetskaya TA, Waldrop MP, Phelps TJ, Pfiffner SM, Onstott TC, Whyte LG, Rivkina EM, Gilichinsky DA, Elias DA, Mackelprang R, VerBerkmoes NC, Hettich RL, Wagner D, Wullschleger SD, Jansson JK.

ISME J. 2012 Apr;6(4):709-12. doi: 10.1038/ismej.2011.163. Epub 2011 Nov 17. No abstract available.

44.

Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome.

Chhabra SR, Butland G, Elias DA, Chandonia JM, Fok OY, Juba TR, Gorur A, Allen S, Leung CM, Keller KL, Reveco S, Zane GM, Semkiw E, Prathapam R, Gold B, Singer M, Ouellet M, Szakal ED, Jorgens D, Price MN, Witkowska HE, Beller HR, Arkin AP, Hazen TC, Biggin MD, Auer M, Wall JD, Keasling JD.

Appl Environ Microbiol. 2011 Nov;77(21):7595-604. doi: 10.1128/AEM.05495-11. Epub 2011 Sep 9.

45.

Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay.

Brown SD, Wall JD, Kucken AM, Gilmour CC, Podar M, Brandt CC, Teshima H, Detter JC, Han CS, Land ML, Lucas S, Han J, Pennacchio L, Nolan M, Pitluck S, Woyke T, Goodwin L, Palumbo AV, Elias DA.

J Bacteriol. 2011 Aug;193(15):4037-8. doi: 10.1128/JB.05223-11. Epub 2011 Jun 3.

46.

Complete genome sequence of the haloalkaliphilic, hydrogen-producing bacterium Halanaerobium hydrogeniformans.

Brown SD, Begemann MB, Mormile MR, Wall JD, Han CS, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Elias DA.

J Bacteriol. 2011 Jul;193(14):3682-3. doi: 10.1128/JB.05209-11. Epub 2011 May 20.

47.

Sulfate-reducing bacterium Desulfovibrio desulfuricans ND132 as a model for understanding bacterial mercury methylation.

Gilmour CC, Elias DA, Kucken AM, Brown SD, Palumbo AV, Schadt CW, Wall JD.

Appl Environ Microbiol. 2011 Jun;77(12):3938-51. doi: 10.1128/AEM.02993-10. Epub 2011 Apr 22.

48.

Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.

Brown SD, Gilmour CC, Kucken AM, Wall JD, Elias DA, Brandt CC, Podar M, Chertkov O, Held B, Bruce DC, Detter JC, Tapia R, Han CS, Goodwin LA, Cheng JF, Pitluck S, Woyke T, Mikhailova N, Ivanova NN, Han J, Lucas S, Lapidus AL, Land ML, Hauser LJ, Palumbo AV.

J Bacteriol. 2011 Apr;193(8):2078-9. doi: 10.1128/JB.00170-11. Epub 2011 Feb 25.

49.

Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams.

Vishnivetskaya TA, Mosher JJ, Palumbo AV, Yang ZK, Podar M, Brown SD, Brooks SC, Gu B, Southworth GR, Drake MM, Brandt CC, Elias DA.

Appl Environ Microbiol. 2011 Jan;77(1):302-11. doi: 10.1128/AEM.01715-10. Epub 2010 Nov 5.

50.

Classification of the morphology of the acromioclavicular joint using cadaveric and radiological analysis.

Colegate-Stone T, Allom R, Singh R, Elias DA, Standring S, Sinha J.

J Bone Joint Surg Br. 2010 May;92(5):743-6. doi: 10.1302/0301-620X.92B5.22876.

PMID:
20436015

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