Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 73

1.

Enhanced detection of circulating tumor DNA by fragment size analysis.

Mouliere F, Chandrananda D, Piskorz AM, Moore EK, Morris J, Ahlborn LB, Mair R, Goranova T, Marass F, Heider K, Wan JCM, Supernat A, Hudecova I, Gounaris I, Ros S, Jimenez-Linan M, Garcia-Corbacho J, Patel K, Østrup O, Murphy S, Eldridge MD, Gale D, Stewart GD, Burge J, Cooper WN, van der Heijden MS, Massie CE, Watts C, Corrie P, Pacey S, Brindle KM, Baird RD, Mau-Sørensen M, Parkinson CA, Smith CG, Brenton JD, Rosenfeld N.

Sci Transl Med. 2018 Nov 7;10(466). pii: eaat4921. doi: 10.1126/scitranslmed.aat4921.

PMID:
30404863
2.

Adaptation and conservation insights from the koala genome.

Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, Alquezar-Planas DE, Attenbrow V, Bragg JG, Brandies PA, Chong AY, Deakin JE, Di Palma F, Duda Z, Eldridge MDB, Ewart KM, Hogg CJ, Frankham GJ, Georges A, Gillett AK, Govendir M, Greenwood AD, Hayakawa T, Helgen KM, Hobbs M, Holleley CE, Heider TN, Jones EA, King A, Madden D, Graves JAM, Morris KM, Neaves LE, Patel HR, Polkinghorne A, Renfree MB, Robin C, Salinas R, Tsangaras K, Waters PD, Waters SA, Wright B, Wilkins MR, Timms P, Belov K.

Nat Genet. 2018 Aug;50(8):1102-1111. doi: 10.1038/s41588-018-0153-5. Epub 2018 Jul 2.

PMID:
29967444
3.

Phylogenetic analysis of the tree-kangaroos (Dendrolagus) reveals multiple divergent lineages within New Guinea.

Eldridge MDB, Potter S, Helgen KM, Sinaga MH, Aplin KP, Flannery TF, Johnson RN.

Mol Phylogenet Evol. 2018 Oct;127:589-599. doi: 10.1016/j.ympev.2018.05.030. Epub 2018 May 25.

PMID:
29807156
4.

Unmasking the complexity of species identification in Australasian flying-foxes.

Neaves LE, Danks M, Lott MJ, Dennison S, Frankham GJ, King A, Eldridge MDB, Johnson RN, Divljan A.

PLoS One. 2018 Apr 10;13(4):e0194908. doi: 10.1371/journal.pone.0194908. eCollection 2018.

5.

Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families.

Duchêne DA, Bragg JG, Duchêne S, Neaves LE, Potter S, Moritz C, Johnson RN, Ho SYW, Eldridge MDB.

Syst Biol. 2018 May 1;67(3):400-412. doi: 10.1093/sysbio/syx076.

PMID:
29029231
6.

Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours.

Harewood L, Kishore K, Eldridge MD, Wingett S, Pearson D, Schoenfelder S, Collins VP, Fraser P.

Genome Biol. 2017 Jun 27;18(1):125. doi: 10.1186/s13059-017-1253-8.

7.

Disseminated Mycobacterium malmoense and Salmonella Infections Associated with a Novel Variant in NFKBIA.

Staples E, Morillo-Gutierrez B, Davies J, Petersheim D, Massaad M, Slatter M, Dimou D, Doffinger R, Hackett S, Kumararatne D, Hadfield J, Eldridge MD, Geha RS, Abinun M, Thaventhiran JED.

J Clin Immunol. 2017 Jul;37(5):415-418. doi: 10.1007/s10875-017-0390-x. Epub 2017 Apr 17. No abstract available.

8.

Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabies.

Potter S, Bragg JG, Blom MP, Deakin JE, Kirkpatrick M, Eldridge MD, Moritz C.

Front Genet. 2017 Feb 10;8:10. doi: 10.3389/fgene.2017.00010. eCollection 2017.

9.

Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).

Eldridge MD, Miller EJ, Neaves LE, Zenger KR, Herbert CA.

PLoS One. 2017 Mar 3;12(3):e0172777. doi: 10.1371/journal.pone.0172777. eCollection 2017.

10.

Corrigendum: Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance.

Secrier M, Li X, de Silva N, Eldridge MD, Contino G, Bornschein J, MacRae S, Grehan N, O'Donovan M, Miremadi A, Yang TP, Bower L, Chettouh H, Crawte J, Galeano-Dalmau N, Grabowska A, Saunders J, Underwood T, Waddell N, Barbour AP, Nutzinger B, Achilleos A, Edwards PA, Lynch AG, Tavaré S, Fitzgerald RC; Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium.

Nat Genet. 2017 Jan 31;49(2):317. doi: 10.1038/ng0217-317a. No abstract available.

PMID:
28138154
11.

Resources for phylogenomic analyses of Australian terrestrial vertebrates.

Bragg JG, Potter S, Bi K, Catullo R, Donnellan SC, Eldridge MDB, Joseph L, Keogh JS, Oliver P, Rowe KC, Moritz C.

Mol Ecol Resour. 2017 Sep;17(5):869-876. doi: 10.1111/1755-0998.12633. Epub 2016 Nov 25.

PMID:
27863094
12.

Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance.

Secrier M, Li X, de Silva N, Eldridge MD, Contino G, Bornschein J, MacRae S, Grehan N, O'Donovan M, Miremadi A, Yang TP, Bower L, Chettouh H, Crawte J, Galeano-Dalmau N, Grabowska A, Saunders J, Underwood T, Waddell N, Barbour AP, Nutzinger B, Achilleos A, Edwards PA, Lynch AG, Tavaré S, Fitzgerald RC; Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium.

Nat Genet. 2016 Oct;48(10):1131-41. doi: 10.1038/ng.3659. Epub 2016 Sep 5. Erratum in: Nat Genet. 2017 Jan 31;49(2):317.

13.

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines.

Contino G, Eldridge MD, Secrier M, Bower L, Fels Elliott R, Weaver J, Lynch AG, Edwards PA, Fitzgerald RC.

F1000Res. 2016 Jun 10;5:1336. doi: 10.12688/f1000research.7033.1. eCollection 2016.

14.

Phylogeography of the Koala, (Phascolarctos cinereus), and Harmonising Data to Inform Conservation.

Neaves LE, Frankham GJ, Dennison S, FitzGibbon S, Flannagan C, Gillett A, Hynes E, Handasyde K, Helgen KM, Tsangaras K, Greenwood AD, Eldridge MD, Johnson RN.

PLoS One. 2016 Sep 2;11(9):e0162207. doi: 10.1371/journal.pone.0162207. eCollection 2016.

15.

Evaluation of next generation sequencing for the analysis of Eimeria communities in wildlife.

Vermeulen ET, Lott MJ, Eldridge MD, Power ML.

J Microbiol Methods. 2016 May;124:1-9. doi: 10.1016/j.mimet.2016.02.018. Epub 2016 Mar 2.

PMID:
26944624
16.

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Alioto TS, Buchhalter I, Derdak S, Hutter B, Eldridge MD, Hovig E, Heisler LE, Beck TA, Simpson JT, Tonon L, Sertier AS, Patch AM, Jäger N, Ginsbach P, Drews R, Paramasivam N, Kabbe R, Chotewutmontri S, Diessl N, Previti C, Schmidt S, Brors B, Feuerbach L, Heinold M, Gröbner S, Korshunov A, Tarpey PS, Butler AP, Hinton J, Jones D, Menzies A, Raine K, Shepherd R, Stebbings L, Teague JW, Ribeca P, Giner FC, Beltran S, Raineri E, Dabad M, Heath SC, Gut M, Denroche RE, Harding NJ, Yamaguchi TN, Fujimoto A, Nakagawa H, Quesada V, Valdés-Mas R, Nakken S, Vodák D, Bower L, Lynch AG, Anderson CL, Waddell N, Pearson JV, Grimmond SM, Peto M, Spellman P, He M, Kandoth C, Lee S, Zhang J, Létourneau L, Ma S, Seth S, Torrents D, Xi L, Wheeler DA, López-Otín C, Campo E, Campbell PJ, Boutros PC, Puente XS, Gerhard DS, Pfister SM, McPherson JD, Hudson TJ, Schlesner M, Lichter P, Eils R, Jones DT, Gut IG.

Nat Commun. 2015 Dec 9;6:10001. doi: 10.1038/ncomms10001.

17.

The Early Effects of Rapid Androgen Deprivation on Human Prostate Cancer.

Shaw GL, Whitaker H, Corcoran M, Dunning MJ, Luxton H, Kay J, Massie CE, Miller JL, Lamb AD, Ross-Adams H, Russell R, Nelson AW, Eldridge MD, Lynch AG, Ramos-Montoya A, Mills IG, Taylor AE, Arlt W, Shah N, Warren AY, Neal DE.

Eur Urol. 2016 Aug;70(2):214-8. doi: 10.1016/j.eururo.2015.10.042. Epub 2015 Nov 10.

18.

Gene flow despite complex Robertsonian fusions among rock-wallaby (Petrogale) species.

Potter S, Moritz C, Eldridge MD.

Biol Lett. 2015 Oct;11(10). pii: 20150731. doi: 10.1098/rsbl.2015.0731.

19.

Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis.

Paterson AL, Weaver JM, Eldridge MD, Tavaré S, Fitzgerald RC, Edwards PA; OCCAMs Consortium.

BMC Genomics. 2015 Jul 10;16:473. doi: 10.1186/s12864-015-1685-z.

20.

Investigation into potential transmission sources of Giardia duodenalis in a threatened marsupial (Petrogale penicillata).

Vermeulen ET, Ashworth DL, Eldridge MD, Power ML.

Infect Genet Evol. 2015 Jul;33:277-80. doi: 10.1016/j.meegid.2015.05.015. Epub 2015 May 15.

PMID:
25986646
21.

Diversity of Cryptosporidium in brush-tailed rock-wallabies (Petrogale penicillata) managed within a species recovery programme.

Vermeulen ET, Ashworth DL, Eldridge MD, Power ML.

Int J Parasitol Parasites Wildl. 2015 Mar 3;4(2):190-6. doi: 10.1016/j.ijppaw.2015.02.005. eCollection 2015 Aug.

22.

A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity.

Hobbs M, Pavasovic A, King AG, Prentis PJ, Eldridge MD, Chen Z, Colgan DJ, Polkinghorne A, Wilkins MR, Flanagan C, Gillett A, Hanger J, Johnson RN, Timms P.

BMC Genomics. 2014 Sep 11;15:786. doi: 10.1186/1471-2164-15-786.

23.

Differing impact of a major biogeographic barrier on genetic structure in two large kangaroos from the monsoon tropics of Northern Australia.

Eldridge MD, Potter S, Johnson CN, Ritchie EG.

Ecol Evol. 2014 Mar;4(5):554-67. doi: 10.1002/ece3.954. Epub 2014 Jan 28.

24.

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

Weaver JMJ, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CJ, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PAW, Rosenfeld N, Tavaré S, Fitzgerald RC; OCCAMS consortium.

Nat Genet. 2014 Aug;46(8):837-843. doi: 10.1038/ng.3013. Epub 2014 Jun 22.

25.

Three divergent lineages within an Australian marsupial (Petrogale penicillata) suggest multiple major refugia for mesic taxa in southeast Australia.

Hazlitt SL, Goldizen AW, Nicholls JA, Eldridge MD.

Ecol Evol. 2014 Apr;4(7):1102-16. doi: 10.1002/ece3.1009. Epub 2014 Mar 6.

26.

Multi-genome alignment for quality control and contamination screening of next-generation sequencing data.

Hadfield J, Eldridge MD.

Front Genet. 2014 Feb 20;5:31. doi: 10.3389/fgene.2014.00031. eCollection 2014.

27.

Taxonomic uncertainty and the loss of biodiversity on Christmas Island, Indian Ocean.

Eldridge MD, Meek PD, Johnson RN.

Conserv Biol. 2014 Apr;28(2):572-9. doi: 10.1111/cobi.12177. Epub 2013 Nov 27.

PMID:
24283832
28.

Nematode community structure in the brush-tailed rock-wallaby, Petrogale penicillata: implications of captive breeding and the translocation of wildlife.

Lott MJ, Eldridge MD, Hose GC, Power ML.

Exp Parasitol. 2012 Oct;132(2):185-92. doi: 10.1016/j.exppara.2012.06.013. Epub 2012 Jul 14.

PMID:
22796751
29.

Novel insights into the phylogenetic relationships of the endangered marsupial genus Potorous.

Frankham GJ, Handasyde KA, Eldridge MD.

Mol Phylogenet Evol. 2012 Sep;64(3):592-602. doi: 10.1016/j.ympev.2012.05.013. Epub 2012 May 27.

PMID:
22643287
30.

Diversity at the major histocompatibility complex Class II in the platypus, Ornithorhynchus anatinus.

Lillie M, Woodward RE, Sanderson CE, Eldridge MD, Belov K.

J Hered. 2012 Jul;103(4):467-78. doi: 10.1093/jhered/ess012. Epub 2012 May 4.

PMID:
22563128
31.

Evolution in a transmissible cancer: a study of the chromosomal changes in devil facial tumor (DFT) as it spreads through the wild Tasmanian devil population.

Pearse AM, Swift K, Hodson P, Hua B, McCallum H, Pyecroft S, Taylor R, Eldridge MD, Belov K.

Cancer Genet. 2012 Mar;205(3):101-12. doi: 10.1016/j.cancergen.2011.12.001.

PMID:
22469509
32.

Multiple biogeographical barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of the brachyotis group of rock-wallabies.

Potter S, Eldridge MD, Taggart DA, Cooper SJ.

Mol Ecol. 2012 May;21(9):2254-69. doi: 10.1111/j.1365-294X.2012.05523.x. Epub 2012 Mar 15.

PMID:
22417115
33.

Assessing the benefits and risks of translocations in changing environments: a genetic perspective.

Weeks AR, Sgro CM, Young AG, Frankham R, Mitchell NJ, Miller KA, Byrne M, Coates DJ, Eldridge MD, Sunnucks P, Breed MF, James EA, Hoffmann AA.

Evol Appl. 2011 Nov;4(6):709-725. Epub 2011 Jun 18.

34.

Phylogenetic relationships of rock-wallabies, Petrogale (Marsupialia: Macropodidae) and their biogeographic history within Australia.

Potter S, Cooper SJ, Metcalfe CJ, Taggart DA, Eldridge MD.

Mol Phylogenet Evol. 2012 Feb;62(2):640-52. doi: 10.1016/j.ympev.2011.11.005. Epub 2011 Nov 20.

PMID:
22122943
35.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 June 2010 - 31 July 2010.

Molecular Ecology Resources Primer Development Consortium, Andris M, Aradottir GI, Arnau G, Audzijonyte A, Bess EC, Bonadonna F, Bourdel G, Bried J, Bugbee GJ, Burger PA, Chair H, Charruau PC, Ciampi AY, Costet L, Debarro PJ, Delatte H, Dubois MP, Eldridge MD, England PR, Enkhbileg D, Fartek B, Gardner MG, Gray KA, Gunasekera RM, Hanley SJ, Havil N, Hereward JP, Hirase S, Hong Y, Jarne P, Jianfei Q, Johnson RN, Kanno M, Kijima A, Kim HC, Kim KS, Kim WJ, Larue E, Lee JW, Lee JH, Li C, Liao M, Lo N, Lowe AJ, Malausa T, Malé PJ, Marko MD, Martin JF, Messing R, Miller KJ, Min BW, Myeong JI, Nibouche S, Noack AE, Noh JK, Orivel J, Park CJ, Petro D, Prapayotin-Riveros K, Quilichini A, Reynaud B, Riginos C, Risterucci AM, Rose HA, Sampaio I, Silbermayr K, Silva MB, Tero N, Thum RA, Vinson CC, Vorsino A, Vossbrinck CR, Walzer C, White JC, Wieczorek A, Wright M.

Mol Ecol Resour. 2010 Nov;10(6):1106-8. doi: 10.1111/j.1755-0998.2010.02916.x. Epub 2010 Sep 26.

PMID:
21565125
36.

Predicting the probability of outbreeding depression.

Frankham R, Ballou JD, Eldridge MD, Lacy RC, Ralls K, Dudash MR, Fenster CB.

Conserv Biol. 2011 Jun;25(3):465-75. doi: 10.1111/j.1523-1739.2011.01662.x. Epub 2011 Apr 12.

PMID:
21486369
37.

Dominance, body size and internal relatedness influence male reproductive success in eastern grey kangaroos (Macropus giganteus).

Miller EJ, Eldridge MD, Cooper DW, Herbert CA.

Reprod Fertil Dev. 2010;22(3):539-49. doi: 10.1071/RD09061.

PMID:
20188027
38.

Molecular detection of hybridization between sympatric kangaroo species in south-eastern Australia.

Neaves LE, Zenger KR, Cooper DW, Eldridge MD.

Heredity (Edinb). 2010 May;104(5):502-12. doi: 10.1038/hdy.2009.137. Epub 2009 Oct 7.

39.

Landscape discontinuities influence gene flow and genetic structure in a large, vagile Australian mammal, Macropus fuliginosus.

Neaves LE, Zenger KR, Prince RI, Eldridge MD, Cooper DW.

Mol Ecol. 2009 Aug;18(16):3363-78. doi: 10.1111/j.1365-294X.2009.04293.x. Epub 2009 Jul 31.

PMID:
19659477
40.

Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii).

Cheng Y, Wakefield M, Siddle HV, Coggill PC, Herbert CA, Beck S, Belov K, Eldridge MD.

Mol Ecol Resour. 2009 Jan;9(1):346-9. doi: 10.1111/j.1755-0998.2008.02401.x.

PMID:
21564646
41.

High levels of genetic variation at MHC class II DBB loci in the tammar wallaby (Macropus eugenii).

Cheng Y, Siddle HV, Beck S, Eldridge MD, Belov K.

Immunogenetics. 2009 Feb;61(2):111-8. doi: 10.1007/s00251-008-0347-6. Epub 2008 Dec 12.

PMID:
19082823
42.

Genomic instability within centromeres of interspecific marsupial hybrids.

Metcalfe CJ, Bulazel KV, Ferreri GC, Schroeder-Reiter E, Wanner G, Rens W, Obergfell C, Eldridge MD, O'Neill RJ.

Genetics. 2007 Dec;177(4):2507-17.

43.

Transmission of a fatal clonal tumor by biting occurs due to depleted MHC diversity in a threatened carnivorous marsupial.

Siddle HV, Kreiss A, Eldridge MD, Noonan E, Clarke CJ, Pyecroft S, Woods GM, Belov K.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16221-6. Epub 2007 Oct 2.

44.
46.

Restricted mating dispersal and strong breeding group structure in a mid-sized marsupial mammal (Petrogale penicillata).

Hazlitt SL, Sigg DP, Eldridge MD, Goldizen AW.

Mol Ecol. 2006 Sep;15(10):2997-3007.

PMID:
16911216
47.

Cytogenetic and molecular evaluation of centromere-associated DNA sequences from a marsupial (Macropodidae: Macropus rufogriseus) X chromosome.

Bulazel K, Metcalfe C, Ferreri GC, Yu J, Eldridge MD, O'Neill RJ.

Genetics. 2006 Feb;172(2):1129-37. Epub 2005 Dec 30.

48.

Retention of latent centromeres in the Mammalian genome.

Ferreri GC, Liscinsky DM, Mack JA, Eldridge MD, O'Neill RJ.

J Hered. 2005 May-Jun;96(3):217-24. Epub 2005 Jan 13.

PMID:
15653556
49.
50.

Centromere dynamics and chromosome evolution in marsupials.

O'Neill RJ, Eldridge MD, Metcalfe CJ.

J Hered. 2004 Sep-Oct;95(5):375-81. Review. Erratum in: J Hered. 2005 Jan-Feb;96(1):2 p following table of contents.

PMID:
15388765

Supplemental Content

Loading ...
Support Center