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Items: 29

1.

Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays.

Sasani TA, Cone KR, Quinlan AR, Elde NC.

Elife. 2018 Aug 29;7. pii: e35453. doi: 10.7554/eLife.35453.

2.

Rapid Evolution of Primate Type 2 Immune Response Factors Linked to Asthma Susceptibility.

Barber MF, Lee EM, Griffin H, Elde NC.

Genome Biol Evol. 2017 Jun 1;9(6):1757-1765. doi: 10.1093/gbe/evx120.

3.

Emergence of a Viral RNA Polymerase Variant during Gene Copy Number Amplification Promotes Rapid Evolution of Vaccinia Virus.

Cone KR, Kronenberg ZN, Yandell M, Elde NC.

J Virol. 2017 Jan 31;91(4). pii: e01428-16. doi: 10.1128/JVI.01428-16. Print 2017 Feb 15.

4.

Regulatory activities of transposable elements: from conflicts to benefits.

Chuong EB, Elde NC, Feschotte C.

Nat Rev Genet. 2017 Feb;18(2):71-86. doi: 10.1038/nrg.2016.139. Epub 2016 Nov 21. Review.

5.

Disruption of promoter memory by synthesis of a long noncoding RNA.

Yu Y, Yarrington RM, Chuong EB, Elde NC, Stillman DJ.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9575-80. doi: 10.1073/pnas.1601793113. Epub 2016 Aug 9.

6.

Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans.

Barber MF, Kronenberg Z, Yandell M, Elde NC.

PLoS Genet. 2016 May 20;12(5):e1006063. doi: 10.1371/journal.pgen.1006063. eCollection 2016 May.

7.

Regulatory evolution of innate immunity through co-option of endogenous retroviruses.

Chuong EB, Elde NC, Feschotte C.

Science. 2016 Mar 4;351(6277):1083-7. doi: 10.1126/science.aad5497.

8.

Wham: Identifying Structural Variants of Biological Consequence.

Kronenberg ZN, Osborne EJ, Cone KR, Kennedy BJ, Domyan ET, Shapiro MD, Elde NC, Yandell M.

PLoS Comput Biol. 2015 Dec 1;11(12):e1004572. doi: 10.1371/journal.pcbi.1004572. eCollection 2015 Dec.

9.

Buried Treasure: Evolutionary Perspectives on Microbial Iron Piracy.

Barber MF, Elde NC.

Trends Genet. 2015 Nov;31(11):627-636. doi: 10.1016/j.tig.2015.09.001. Epub 2015 Sep 29. Review.

10.

Baculovirus protein PK2 subverts eIF2α kinase function by mimicry of its kinase domain C-lobe.

Li JJ, Cao C, Fixsen SM, Young JM, Ono C, Bando H, Elde NC, Katsuma S, Dever TE, Sicheri F.

Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):E4364-73. doi: 10.1073/pnas.1505481112. Epub 2015 Jul 27.

11.

Overlapping Patterns of Rapid Evolution in the Nucleic Acid Sensors cGAS and OAS1 Suggest a Common Mechanism of Pathogen Antagonism and Escape.

Hancks DC, Hartley MK, Hagan C, Clark NL, Elde NC.

PLoS Genet. 2015 May 5;11(5):e1005203. doi: 10.1371/journal.pgen.1005203. eCollection 2015 May.

12.

cGAS-mediated stabilization of IFI16 promotes innate signaling during herpes simplex virus infection.

Orzalli MH, Broekema NM, Diner BA, Hancks DC, Elde NC, Cristea IM, Knipe DM.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):E1773-81. doi: 10.1073/pnas.1424637112. Epub 2015 Mar 23.

13.

Determinants for degradation of SAMHD1, Mus81 and induction of G2 arrest in HIV-1 Vpr and SIVagm Vpr.

DePaula-Silva AB, Cassiday PA, Chumley J, Bosque A, Monteiro-Filho CMR, Mahon CS, Cone KR, Krogan N, Elde NC, Planelles V.

Virology. 2015 Mar;477:10-17. doi: 10.1016/j.virol.2014.12.040. Epub 2015 Jan 22.

14.

DisAp-dependent striated fiber elongation is required to organize ciliary arrays.

Galati DF, Bonney S, Kronenberg Z, Clarissa C, Yandell M, Elde NC, Jerka-Dziadosz M, Giddings TH, Frankel J, Pearson CG.

J Cell Biol. 2014 Dec 22;207(6):705-15. doi: 10.1083/jcb.201409123.

15.

Nutritional immunity. Escape from bacterial iron piracy through rapid evolution of transferrin.

Barber MF, Elde NC.

Science. 2014 Dec 12;346(6215):1362-6. doi: 10.1126/science.1259329.

16.

Evolutionary biology: Mimicry all the way down.

Barber MF, Elde NC.

Nature. 2013 Sep 5;501(7465):38-9. doi: 10.1038/501038a. No abstract available.

PMID:
24005409
17.

Poliovirus evolution: the strong, silent type.

Elde NC.

Cell Host Microbe. 2012 Nov 15;12(5):605-6. doi: 10.1016/j.chom.2012.11.002.

18.

Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses.

Elde NC, Child SJ, Eickbush MT, Kitzman JO, Rogers KS, Shendure J, Geballe AP, Malik HS.

Cell. 2012 Aug 17;150(4):831-41. doi: 10.1016/j.cell.2012.05.049.

19.

A cross-species view on viruses.

Sawyer SL, Elde NC.

Curr Opin Virol. 2012 Oct;2(5):561-8. doi: 10.1016/j.coviro.2012.07.003. Epub 2012 Jul 24. Review.

20.

Absence of positive selection on centromeric histones in Tetrahymena suggests unsuppressed centromere: drive in lineages lacking male meiosis.

Elde NC, Roach KC, Yao MC, Malik HS.

J Mol Evol. 2011 Jun;72(5-6):510-20. doi: 10.1007/s00239-011-9449-0. Epub 2011 Jun 4.

21.

The evolutionary conundrum of pathogen mimicry.

Elde NC, Malik HS.

Nat Rev Microbiol. 2009 Nov;7(11):787-97. doi: 10.1038/nrmicro2222. Epub 2009 Oct 6. Review.

PMID:
19806153
22.

Protein kinase R reveals an evolutionary model for defeating viral mimicry.

Elde NC, Child SJ, Geballe AP, Malik HS.

Nature. 2009 Jan 22;457(7228):485-9. doi: 10.1038/nature07529. Epub 2008 Nov 30.

23.

A dynamin-related protein required for nuclear remodeling in Tetrahymena.

Rahaman A, Elde NC, Turkewitz AP.

Curr Biol. 2008 Aug 26;18(16):1227-33. doi: 10.1016/j.cub.2008.07.042. Epub 2008 Aug 14.

24.

A role for convergent evolution in the secretory life of cells.

Elde NC, Long M, Turkewitz AP.

Trends Cell Biol. 2007 Apr;17(4):157-64. Epub 2007 Feb 27.

PMID:
17329106
25.

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E.

PLoS Biol. 2006 Sep;4(9):e286.

26.

Elucidation of clathrin-mediated endocytosis in tetrahymena reveals an evolutionarily convergent recruitment of dynamin.

Elde NC, Morgan G, Winey M, Sperling L, Turkewitz AP.

PLoS Genet. 2005 Nov;1(5):e52. Epub 2005 Nov 4.

27.
28.

Random amplified polymorphic DNA markers reveal genetic variation in the symbiotic fungus of leaf-cutting ants.

Doherty KR, Zweifel EW, Elde NC, McKone MJ, Zweifel SG.

Mycologia. 2003 Jan-Feb;95(1):19-23.

PMID:
21156584
29.

An antisense approach to phenotype-based gene cloning in Tetrahymena.

Chilcoat ND, Elde NC, Turkewitz AP.

Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8709-13. Epub 2001 Jul 3.

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