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Items: 1 to 50 of 574

1.

Migrating the SNP array-based homologous recombination deficiency measures to next generation sequencing data of breast cancer.

Sztupinszki Z, Diossy M, Krzystanek M, Reiniger L, Csabai I, Favero F, Birkbak NJ, Eklund AC, Syed A, Szallasi Z.

NPJ Breast Cancer. 2018 Jul 2;4:16. doi: 10.1038/s41523-018-0066-6. eCollection 2018.

2.

Familial Aggregation and Heritability of Sarcoidosis: A Swedish Nested Case-Control Study.

Rossides M, Grunewald J, Eklund A, Kullberg S, Di Giuseppe D, Askling J, Arkema EV.

Eur Respir J. 2018 Jun 25. pii: 1800385. doi: 10.1183/13993003.00385-2018. [Epub ahead of print]

PMID:
29946010
3.

Breast cancer brain metastases show increased levels of genomic aberration based homologous recombination deficiency scores relative to their corresponding primary tumors.

Diossy M, Reiniger L, Sztupinszki Z, Krzystanek M, Timms KM, Neff C, Solimeno C, Pruss D, Eklund AC, Tóth E, Kiss O, Rusz O, Cserni G, Zombori T, Székely B, Tímár J, Csabai I, Szallasi Z.

Ann Oncol. 2018 Jun 18. doi: 10.1093/annonc/mdy216. [Epub ahead of print]

PMID:
29917049
4.

Facilitators and barriers to ad hoc team performance.

White BAA, Eklund A, McNeal T, Hochhalter A, Arroliga AC.

Proc (Bayl Univ Med Cent). 2018 May 14;31(3):380-384. doi: 10.1080/08998280.2018.1457879. eCollection 2018 Jul.

5.

Site-Specific Labeling of Affimers for DNA-PAINT Microscopy.

Schlichthaerle T, Eklund AS, Schueder F, Strauss MT, Tiede C, Curd A, Ries J, Peckham M, Tomlinson DC, Jungmann R.

Angew Chem Int Ed Engl. 2018 Jun 6. doi: 10.1002/anie.201804020. [Epub ahead of print]

PMID:
29873161
6.

Corrigendum: An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes.

Bjerregaard AM, Nielsen M, Jurtz V, Barra CM, Hadrup SR, Szallasi Z, Eklund AC.

Front Immunol. 2018 May 14;9:1007. doi: 10.3389/fimmu.2018.01007. eCollection 2018.

7.

Reply.

Lindén C, Qvarlander S, Jóhannesson G, Johansson E, Östlund F, Malm J, Eklund A.

Ophthalmology. 2018 Jun;125(6):e43-e44. doi: 10.1016/j.ophtha.2018.01.006. No abstract available.

PMID:
29784104
8.

Increase of frontal neuronal activity in chronic neglect after training in virtual reality.

Ekman U, Fordell H, Eriksson J, Lenfeldt N, Wåhlin A, Eklund A, Malm J.

Acta Neurol Scand. 2018 May 16. doi: 10.1111/ane.12955. [Epub ahead of print]

PMID:
29770439
9.

Intracranial and Intraocular Pressure at the Lamina Cribrosa: Gradient Effects.

Jóhannesson G, Eklund A, Lindén C.

Curr Neurol Neurosci Rep. 2018 Apr 12;18(5):25. doi: 10.1007/s11910-018-0831-9. Review.

10.

Author Correction: Limited evidence on the effectiveness of interventions to reduce livestock predation by large carnivores.

Eklund A, López-Bao JV, Tourani M, Chapron G, Frank J.

Sci Rep. 2018 Apr 5;8(1):5770. doi: 10.1038/s41598-018-23581-2.

11.

Bayesian uncertainty quantification in linear models for diffusion MRI.

Sjölund J, Eklund A, Özarslan E, Herberthson M, Bånkestad M, Knutsson H.

Neuroimage. 2018 Jul 15;175:272-285. doi: 10.1016/j.neuroimage.2018.03.059. Epub 2018 Mar 29.

PMID:
29604453
12.

Computational prediction of neoantigens: do we need more data or new approaches?

Eklund AC, Szallasi Z.

Ann Oncol. 2018 Apr 1;29(4):799-801. doi: 10.1093/annonc/mdy070. No abstract available.

PMID:
29481589
13.

Sarcoidosis mortality in Sweden: a population-based cohort study.

Rossides M, Kullberg S, Askling J, Eklund A, Grunewald J, Arkema EV.

Eur Respir J. 2018 Feb 21;51(2). pii: 1701815. doi: 10.1183/13993003.01815-2017. Print 2018 Feb.

14.

Leadership and capacity building in international chiropractic research: introducing the chiropractic academy for research leadership (CARL).

Adams J, Kawchuk G, Breen A, De Carvalho D, Eklund A, Fernandez M, Funabashi M, Holmes MM, Johansson MS, de Luca K, Moore C, Pagé I, Pohlman KA, Swain MS, Wong AYL, Hartvigsen J.

Chiropr Man Therap. 2018 Feb 6;26:5. doi: 10.1186/s12998-018-0173-3. eCollection 2018.

15.

An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes.

Bjerregaard AM, Nielsen M, Jurtz V, Barra CM, Hadrup SR, Szallasi Z, Eklund AC.

Front Immunol. 2017 Nov 15;8:1566. doi: 10.3389/fimmu.2017.01566. eCollection 2017. Erratum in: Front Immunol. 2018 May 14;9:1007.

16.

Venous collapse regulates intracranial pressure in upright body positions.

Holmlund P, Eklund A, Koskinen LD, Johansson E, Sundström N, Malm J, Qvarlander S.

Am J Physiol Regul Integr Comp Physiol. 2018 Mar 1;314(3):R377-R385. doi: 10.1152/ajpregu.00291.2017. Epub 2017 Nov 8.

PMID:
29118021
17.

Bayesian Rician Regression for Neuroimaging.

Wegmann B, Eklund A, Villani M.

Front Neurosci. 2017 Oct 20;11:586. doi: 10.3389/fnins.2017.00586. eCollection 2017.

18.

Normal-Tension Glaucoma Has Normal Intracranial Pressure: A Prospective Study of Intracranial Pressure and Intraocular Pressure in Different Body Positions.

Lindén C, Qvarlander S, Jóhannesson G, Johansson E, Östlund F, Malm J, Eklund A.

Ophthalmology. 2018 Mar;125(3):361-368. doi: 10.1016/j.ophtha.2017.09.022. Epub 2017 Oct 31.

19.

Subdural hematomas in 1846 patients with shunted idiopathic normal pressure hydrocephalus: treatment and long-term survival.

Sundström N, Lagebrant M, Eklund A, Koskinen LD, Malm J.

J Neurosurg. 2017 Oct 27:1-8. doi: 10.3171/2017.5.JNS17481. [Epub ahead of print]

PMID:
29076787
20.

Enhanced CD8+ cytolytic T cell responses in the peripheral circulation of patients with sarcoidosis and non-Löfgren's disease.

Parasa VR, Forsslund H, Enger T, Lorenz D, Kullberg S, Eklund A, Sköld M, Wahlström J, Grunewald J, Brighenti S.

Respir Med. 2018 May;138S:S38-S44. doi: 10.1016/j.rmed.2017.10.006. Epub 2017 Oct 13.

PMID:
29055517
21.

Mass Cytometry Identifies Distinct Lung CD4+ T Cell Patterns in Löfgren's Syndrome and Non-Löfgren's Syndrome Sarcoidosis.

Kaiser Y, Lakshmikanth T, Chen Y, Mikes J, Eklund A, Brodin P, Achour A, Grunewald J.

Front Immunol. 2017 Sep 12;8:1130. doi: 10.3389/fimmu.2017.01130. eCollection 2017.

22.

Abstracts from Hydrocephalus 2016.

Adam A, Robison J, Lu J, Jose R, Badran N, Vivas-Buitrago T, Rigamonti D, Sattar A, Omoush O, Hammad M, Dawood M, Maghaslah M, Belcher T, Carson K, Hoffberger J, Jusué Torres I, Foley S, Yasar S, Thai QA, Wemmer J, Klinge P, Al-Mutawa L, Al-Ghamdi H, Carson KA, Asgari M, de Zélicourt D, Kurtcuoglu V, Garnotel S, Salmon S, Balédent O, Lokossou A, Page G, Balardy L, Czosnyka Z, Payoux P, Schmidt EA, Zitoun M, Sevestre MA, Alperin N, Baudracco I, Craven C, Matloob S, Thompson S, Haylock Vize P, Thorne L, Watkins LD, Toma AK, Bechter K, Pong AC, Jugé L, Bilston LE, Cheng S, Bradley W, Hakim F, Ramón JF, Cárdenas MF, Davidson JS, García C, González D, Bermúdez S, Useche N, Mejía JA, Mayorga P, Cruz F, Martinez C, Matiz MC, Vallejo M, Ghotme K, Soto HA, Riveros D, Buitrago A, Mora M, Murcia L, Bermudez S, Cohen D, Dasgupta D, Curtis C, Domínguez L, Remolina AJ, Grijalba MA, Whitehouse KJ, Edwards RJ, Eleftheriou A, Lundin F, Fountas KN, Kapsalaki EZ, Smisson HF, Robinson JS, Fritsch MJ, Arouk W, Garzon M, Kang M, Sandhu K, Baghawatti D, Aquilina K, James G, Thompson D, Gehlen M, Schmid Daners M, Eklund A, Malm J, Gomez D, Guerra M, Jara M, Flores M, Vío K, Moreno I, Rodríguez S, Ortega E, Rodríguez EM, McAllister JP, Guerra MM, Morales DM, Sival D, Jimenez A, Limbrick DD, Ishikawa M, Yamada S, Yamamoto K, Junkkari A, Häyrinen A, Rauramaa T, Sintonen H, Nerg O, Koivisto AM, Roine RP, Viinamäki H, Soininen H, Luikku A, Jääskeläinen JE, Leinonen V, Kehler U, Lilja-Lund O, Kockum K, Larsson EM, Riklund K, Söderström L, Hellström P, Laurell K, Kojoukhova M, Sutela A, Vanninen R, Vanha KI, Timonen M, Rummukainen J, Korhonen V, Helisalmi S, Solje E, Remes AM, Huovinen J, Paananen J, Hiltunen M, Kurki M, Martin B, Loth F, Luciano M, Luikku AJ, Hall A, Herukka SK, Mattila J, Lötjönen J, Alafuzoff I, Jurjević I, Miyajima M, Nakajima M, Murai H, Shin T, Kawaguchi D, Akiba C, Ogino I, Karagiozov K, Arai H, Reis RC, Teixeira MJ, Valêncio CG, da Vigua D, Almeida-Lopes L, Mancini MW, Pinto FCG, Maykot RH, Calia G, Tornai J, Silvestre SSS, Mendes G, Sousa V, Bezerra B, Dutra P, Modesto P, Oliveira MF, Petitto CE, Pulhorn H, Chandran A, McMahon C, Rao AS, Jumaly M, Solomon D, Moghekar A, Relkin N, Hamilton M, Katzen H, Williams M, Bach T, Zuspan S, Holubkov R, Rigamonti A, Clemens G, Sharkey P, Sanyal A, Sankey E, Rigamonti K, Naqvi S, Hung A, Schmidt E, Ory-Magne F, Gantet P, Guenego A, Januel AC, Tall P, Fabre N, Mahieu L, Cognard C, Gray L, Buttner-Ennever JA, Takagi K, Onouchi K, Thompson SD, Thorne LD, Tully HM, Wenger TL, Kukull WA, Doherty D, Dobyns WB, Moran D, Vakili S, Patel MA, Elder B, Goodwin CR, Crawford JA, Pletnikov MV, Xu J, Blitz A, Herzka DA, Guerrero-Cazares H, Quiñones-Hinojosa A, Mori S, Saavedra P, Treviño H, Maitani K, Ziai WC, Eslami V, Nekoovaght-Tak S, Dlugash R, Yenokyan G, McBee N, Hanley DF.

Fluids Barriers CNS. 2017 Jun 7;14(Suppl 1):15. doi: 10.1186/s12987-017-0054-5. No abstract available.

23.

Epilepsy, headache, and abdominal pain after shunt surgery for idiopathic normal pressure hydrocephalus: the INPH-CRasH study.

Larsson J, Israelsson H, Eklund A, Malm J.

J Neurosurg. 2018 Jun;128(6):1674-1683. doi: 10.3171/2017.3.JNS162453. Epub 2017 Sep 8.

PMID:
28885121
24.

Shared αβ TCR Usage in Lungs of Sarcoidosis Patients with Löfgren's Syndrome.

Mitchell AM, Kaiser Y, Falta MT, Munson DJ, Landry LG, Eklund A, Nakayama M, Slansky JE, Grunewald J, Fontenot AP.

J Immunol. 2017 Oct 1;199(7):2279-2290. doi: 10.4049/jimmunol.1700570. Epub 2017 Aug 21.

PMID:
28827283
25.

An adaptive, individualized fMRI delay discounting procedure to increase flexibility and optimize scanner time.

Koffarnus MN, Deshpande HU, Lisinski JM, Eklund A, Bickel WK, LaConte SM.

Neuroimage. 2017 Nov 1;161:56-66. doi: 10.1016/j.neuroimage.2017.08.024. Epub 2017 Aug 10.

PMID:
28803942
26.

Common variants of T-cells contribute differently to phenotypic variation in sarcoidosis.

Rivera NV, Hagemann-Jensen M, Ferreira MAR, Kullberg S, Eklund A, Martin NG, Padyukov L, Grunewald J.

Sci Rep. 2017 Jul 17;7(1):5623. doi: 10.1038/s41598-017-05754-7.

27.

Comparison of anti-siphon devices-how do they affect CSF dynamics in supine and upright posture?

Gehlen M, Eklund A, Kurtcuoglu V, Malm J, Schmid Daners M.

Acta Neurochir (Wien). 2017 Aug;159(8):1389-1397. doi: 10.1007/s00701-017-3249-2. Epub 2017 Jun 28.

PMID:
28660395
28.

Human jugular vein collapse in the upright posture: implications for postural intracranial pressure regulation.

Holmlund P, Johansson E, Qvarlander S, Wåhlin A, Ambarki K, Koskinen LD, Malm J, Eklund A.

Fluids Barriers CNS. 2017 Jun 17;14(1):17. doi: 10.1186/s12987-017-0065-2.

29.

Limited evidence on the effectiveness of interventions to reduce livestock predation by large carnivores.

Eklund A, López-Bao JV, Tourani M, Chapron G, Frank J.

Sci Rep. 2017 May 18;7(1):2097. doi: 10.1038/s41598-017-02323-w. Erratum in: Sci Rep. 2018 Apr 5;8(1):5770.

30.

Alzheimer's Disease-Associated Cerebrospinal Fluid (CSF) Biomarkers do not Correlate with CSF Volumes or CSF Production Rate.

Edsbagge M, Andreasson U, Ambarki K, Wikkelsø C, Eklund A, Blennow K, Zetterberg H, Tullberg M.

J Alzheimers Dis. 2017;58(3):821-828. doi: 10.3233/JAD-161257.

PMID:
28505972
31.

Pulmonary Extracellular Vesicles as Mediators of Local and Systemic Inflammation.

Wahlund CJE, Eklund A, Grunewald J, Gabrielsson S.

Front Cell Dev Biol. 2017 Apr 26;5:39. doi: 10.3389/fcell.2017.00039. eCollection 2017. Review.

32.

A Bayesian heteroscedastic GLM with application to fMRI data with motion spikes.

Eklund A, Lindquist MA, Villani M.

Neuroimage. 2017 Jul 15;155:354-369. doi: 10.1016/j.neuroimage.2017.04.069. Epub 2017 May 1.

PMID:
28473287
33.

SNP Variants in Major Histocompatibility Complex Are Associated with Sarcoidosis Susceptibility-A Joint Analysis in Four European Populations.

Wolin A, Lahtela EL, Anttila V, Petrek M, Grunewald J, van Moorsel CHM, Eklund A, Grutters JC, Kolek V, Mrazek F, Kishore A, Padyukov L, Pietinalho A, Ronninger M, Seppänen M, Selroos O, Lokki ML.

Front Immunol. 2017 Apr 19;8:422. doi: 10.3389/fimmu.2017.00422. eCollection 2017.

34.

MuPeXI: prediction of neo-epitopes from tumor sequencing data.

Bjerregaard AM, Nielsen M, Hadrup SR, Szallasi Z, Eklund AC.

Cancer Immunol Immunother. 2017 Sep;66(9):1123-1130. doi: 10.1007/s00262-017-2001-3. Epub 2017 Apr 20.

PMID:
28429069
35.

Reply to Brown and Behrmann, Cox, et al., and Kessler et al.: Data and code sharing is the way forward for fMRI.

Eklund A, Nichols TE, Knutsson H.

Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):E3374-E3375. doi: 10.1073/pnas.1620285114. Epub 2017 Apr 18. No abstract available.

36.

Poor construction, not time, takes its toll on subsidised fences designed to deter large carnivores.

Frank J, Eklund A.

PLoS One. 2017 Apr 10;12(4):e0175211. doi: 10.1371/journal.pone.0175211. eCollection 2017.

37.

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA.

PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar.

38.

A defense of using resting-state fMRI as null data for estimating false positive rates.

Nichols TE, Eklund A, Knutsson H.

Cogn Neurosci. 2017 Jul;8(3):144-149. doi: 10.1080/17588928.2017.1287069. Epub 2017 Feb 22.

PMID:
28140785
39.

Order of magnitude improvement of nano-contact spin torque nano-oscillator performance.

Banuazizi SA, Sani SR, Eklund A, Naiini MM, Mohseni SM, Chung S, Dürrenfeld P, Malm BG, Åkerman J.

Nanoscale. 2017 Feb 2;9(5):1896-1900. doi: 10.1039/c6nr07309c.

PMID:
28094381
40.

Vascular risk factors in INPH: A prospective case-control study (the INPH-CRasH study).

Israelsson H, Carlberg B, Wikkelsö C, Laurell K, Kahlon B, Leijon G, Eklund A, Malm J.

Neurology. 2017 Feb 7;88(6):577-585. doi: 10.1212/WNL.0000000000003583. Epub 2017 Jan 6.

41.

Intracranial and Intraocular Pressure During Various Degrees of Head-Down Tilt.

Marshall-Goebel K, Mulder E, Bershad E, Laing C, Eklund A, Malm J, Stern C, Rittweger J.

Aerosp Med Hum Perform. 2017 Jan 1;88(1):10-16. doi: 10.3357/AMHP.4653.2017.

PMID:
28061916
42.

Prey Selection of Scandinavian Wolves: Single Large or Several Small?

Sand H, Eklund A, Zimmermann B, Wikenros C, Wabakken P.

PLoS One. 2016 Dec 28;11(12):e0168062. doi: 10.1371/journal.pone.0168062. eCollection 2016.

43.

Fast Bayesian whole-brain fMRI analysis with spatial 3D priors.

Sidén P, Eklund A, Bolin D, Villani M.

Neuroimage. 2017 Feb 1;146:211-225. doi: 10.1016/j.neuroimage.2016.11.040. Epub 2016 Nov 19.

44.

A Stereotactic Probabilistic Atlas for the Major Cerebral Arteries.

Dunås T, Wåhlin A, Ambarki K, Zarrinkoob L, Malm J, Eklund A.

Neuroinformatics. 2017 Jan;15(1):101-110. doi: 10.1007/s12021-016-9320-y.

45.

The lung microbiota in early rheumatoid arthritis and autoimmunity.

Scher JU, Joshua V, Artacho A, Abdollahi-Roodsaz S, Öckinger J, Kullberg S, Sköld M, Eklund A, Grunewald J, Clemente JC, Ubeda C, Segal LN, Catrina AI.

Microbiome. 2016 Nov 17;4(1):60.

46.

Distinctive Regulatory T Cells and Altered Cytokine Profile Locally in the Airways of Young Smokers with Normal Lung Function.

Ostadkarampour M, Müller M, Öckinger J, Kullberg S, Lindén A, Eklund A, Grunewald J, Wahlström J.

PLoS One. 2016 Oct 31;11(10):e0164751. doi: 10.1371/journal.pone.0164751. eCollection 2016.

47.

Distortion Product Otoacoustic Emissions and Intracranial Pressure During CSF Infusion Testing.

Williams MA, Malm J, Eklund A, Horton NJ, Voss SE.

Aerosp Med Hum Perform. 2016;87(10):844-851.

PMID:
27662346
48.

Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes.

Bentzen AK, Marquard AM, Lyngaa R, Saini SK, Ramskov S, Donia M, Such L, Furness AJ, McGranahan N, Rosenthal R, Straten PT, Szallasi Z, Svane IM, Swanton C, Quezada SA, Jakobsen SN, Eklund AC, Hadrup SR.

Nat Biotechnol. 2016 Oct;34(10):1037-1045. doi: 10.1038/nbt.3662. Epub 2016 Aug 29.

PMID:
27571370
49.

Pulmonary sarcoidosis is associated with exosomal vitamin D-binding protein and inflammatory molecules.

Martinez-Bravo MJ, Wahlund CJ, Qazi KR, Moulder R, Lukic A, Rådmark O, Lahesmaa R, Grunewald J, Eklund A, Gabrielsson S.

J Allergy Clin Immunol. 2017 Apr;139(4):1186-1194. doi: 10.1016/j.jaci.2016.05.051. Epub 2016 Aug 23.

PMID:
27566455
50.

Sarcoidosis incidence and prevalence: a nationwide register-based assessment in Sweden.

Arkema EV, Grunewald J, Kullberg S, Eklund A, Askling J.

Eur Respir J. 2016 Dec;48(6):1690-1699. doi: 10.1183/13993003.00477-2016. Epub 2016 Jul 28.

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