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Items: 1 to 50 of 62

1.

BRAZIL ROAD-KILL: a data set of wildlife terrestrial vertebrate road-kills.

Grilo C, Coimbra MR, Cerqueira RC, Barbosa P, Dornas RAP, Gonçalves LO, Teixeira FZ, Coelho IP, Schmidt BR, Pacheco DLK, Schuck G, Esperando IB, Anza JA, Beduschi J, Oliveira NR, Pinheiro PF, Bager A, Secco H, Guerreiro M, Carvalho CF, Veloso AC, Custódio AEI, Marçal O Jr, Ciocheti G, Assis J, Ribeiro MC, Francisco BSS, Cherem JJ, Trigo TC, Jardim MMA, Franceschi IC, Espinosa C, Tirelli FP, Rocha VJ, Sekiama ML, Barbosa GP, Rossi HR, Moreira TC, Cervini M, Rosa CA, Silva LG, Ferreira CMM, César A, Casella J, Mendes SL, Zina J, Bastos DFO, Souza RAT, Hartmann PA, Deffaci ACG, Mulinari J, Luzzi SC, Rezzadori T, Kolcenti C, Reis TX, Fonseca VSC, Giorgi CF, Migliorini RP, Kasper CB, Bueno C, Sobanski M, Pereira APFG, Andrade FAG, Fernandes MEB, Corrêa LLC, Nepomuceno A, Banhos A, Hannibal W, Fonseca R, Costa LA, Medici EP, Croce A, Werther K, Oliveira JP, Ribeiro JM, de Santi M, Kawanami AE, Perles L, do Couto C, Figueiró DS, Eizirik E, Correia AA Jr, Corrêa FM, Queirolo D, Quagliatto AL, Saranholi BH, Galetti PM Jr, Rodriguez-Castro KG, Braz VS, França FGR, Buss G, Rezini JA, Lion MB, Cheida CC, Lacerda ACR, Freitas CH, Venâncio F, Adania CH, Batisteli AF, Hegel CGZ, Mantovani JA, Rodrigues FHG, Bagatini T, Curi NHA, Emmert L, Erdmann RH, Costa RRGF, Martinelli A, Santos CVF, Kindel A.

Ecology. 2018 Sep 19. doi: 10.1002/ecy.2464. [Epub ahead of print]

PMID:
30229895
2.

Phylogeographic analyses of the pampas cat (Leopardus colocola; Carnivora, Felidae) reveal a complex demographic history.

da Silva Santos A, Trigo TC, de Oliveira TG, Silveira L, Eizirik E.

Genet Mol Biol. 2018;41(1 suppl 1):273-287. doi: 10.1590/1678-4685-GMB-2017-0079.

3.

Microbiota associated with tubes of Escarpia sp. from cold seeps in the southwestern Atlantic Ocean constitutes a community distinct from that of surrounding marine sediment and water.

Medina-Silva R, Oliveira RR, Trindade FJ, Borges LGA, Lopes Simão TL, Augustin AH, Valdez FP, Constant MJ, Simundi CL, Eizirik E, Groposo C, Miller DJ, da Silva PR, Viana AR, Ketzer JMM, Giongo A.

Antonie Van Leeuwenhoek. 2018 Apr;111(4):533-550. doi: 10.1007/s10482-017-0975-7. Epub 2017 Nov 6.

PMID:
29110156
4.

Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E.

Sci Adv. 2017 Jul 19;3(7):e1700299. doi: 10.1126/sciadv.1700299. eCollection 2017 Jul.

5.

Characterization of ciliate diversity in bromeliad tank waters from the Brazilian Atlantic Forest.

Simão TLL, Borges AG, Gano KA, Davis-Richardson AG, Brown CT, Fagen JR, Triplett EW, Dias R, Mondin CA, da Silva RM, Eizirik E, Utz LRP.

Eur J Protistol. 2017 Oct;61(Pt B):359-365. doi: 10.1016/j.ejop.2017.05.005. Epub 2017 May 17.

6.

Mapping black panthers: Macroecological modeling of melanism in leopards (Panthera pardus).

da Silva LG, Kawanishi K, Henschel P, Kittle A, Sanei A, Reebin A, Miquelle D, Stein AB, Watson A, Kekule LB, Machado RB, Eizirik E.

PLoS One. 2017 Apr 5;12(4):e0170378. doi: 10.1371/journal.pone.0170378. eCollection 2017.

7.

A biodiversity hotspot losing its top predator: The challenge of jaguar conservation in the Atlantic Forest of South America.

Paviolo A, De Angelo C, Ferraz KM, Morato RG, Martinez Pardo J, Srbek-Araujo AC, Beisiegel BM, Lima F, Sana D, Xavier da Silva M, Velázquez MC, Cullen L, Crawshaw P Jr, Jorge ML, Galetti PM, Di Bitetti MS, de Paula RC, Eizirik E, Aide TM, Cruz P, Perilli ML, Souza AS, Quiroga V, Nakano E, Ramírez Pinto F, Fernández S, Costa S, Moraes EA Jr, Azevedo F.

Sci Rep. 2016 Nov 16;6:37147. doi: 10.1038/srep37147.

8.

Waking the undead: Implications of a soft explosive model for the timing of placental mammal diversification.

Springer MS, Emerling CA, Meredith RW, Janečka JE, Eizirik E, Murphy WJ.

Mol Phylogenet Evol. 2017 Jan;106:86-102. doi: 10.1016/j.ympev.2016.09.017. Epub 2016 Sep 19.

PMID:
27659724
9.

Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae).

Tchaicka L, Freitas TR, Bager A, Vidal SL, Lucherini M, Iriarte A, Novaro A, Geffen E, Garcez FS, Johnson WE, Wayne RK, Eizirik E.

Genet Mol Biol. 2016 Jul-Sep;39(3):442-51. doi: 10.1590/1678-4685-GMB-2015-0189. Epub 2016 Jul 25.

10.

Response to Comment by Faurby, Werdelin and Svenning.

O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P.

Genome Biol. 2016 May 5;17:90. doi: 10.1186/s13059-016-0942-z. No abstract available.

11.

Genomic legacy of the African cheetah, Acinonyx jubatus.

Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ.

Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4.

12.

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae).

Li G, Davis BW, Eizirik E, Murphy WJ.

Genome Res. 2016 Jan;26(1):1-11. doi: 10.1101/gr.186668.114. Epub 2015 Oct 30.

13.

Population Genetics of Jaguars (Panthera onca) in the Brazilian Pantanal: Molecular Evidence for Demographic Connectivity on a Regional Scale.

Valdez FP, Haag T, Azevedo FC, Silveira L, Cavalcanti SM, Salzano FM, Eizirik E.

J Hered. 2015;106 Suppl 1:503-11. doi: 10.1093/jhered/esv046.

PMID:
26245785
14.

Epistylis portoalegrensis n. sp. (Ciliophora, Peritrichia): A New Freshwater Ciliate Species from Southern Brazil.

Kühner S, Simão TL, Safi LS, Gazulha FB, Eizirik E, Utz LR.

J Eukaryot Microbiol. 2016 Jan-Feb;63(1):93-9. doi: 10.1111/jeu.12252. Epub 2015 Aug 28.

PMID:
26198754
15.

Identification and characterization of diverse groups of endogenous retroviruses in felids.

Mata H, Gongora J, Eizirik E, Alves BM, Soares MA, Ravazzolo AP.

Retrovirology. 2015 Mar 15;12:26. doi: 10.1186/s12977-015-0152-x.

16.

Recurrent evolution of melanism in South American felids.

Schneider A, Henegar C, Day K, Absher D, Napolitano C, Silveira L, David VA, O'Brien SJ, Menotti-Raymond M, Barsh GS, Eizirik E.

PLoS Genet. 2015 Feb 19;11(2):e1004892. doi: 10.1371/journal.pgen.1004892. eCollection 2015 Feb. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005126.

17.

Comparative assessment of genetic and morphological variation at an extensive hybrid zone between two wild cats in southern Brazil.

Trigo TC, Tirelli FP, de Freitas TR, Eizirik E.

PLoS One. 2014 Sep 24;9(9):e108469. doi: 10.1371/journal.pone.0108469. eCollection 2014.

18.

Endogenous retrovirus insertion in the KIT oncogene determines white and white spotting in domestic cats.

David VA, Menotti-Raymond M, Wallace AC, Roelke M, Kehler J, Leighty R, Eizirik E, Hannah SS, Nelson G, Schäffer AA, Connelly CJ, O'Brien SJ, Ryugo DK.

G3 (Bethesda). 2014 Aug 1;4(10):1881-91. doi: 10.1534/g3.114.013425.

19.

Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae).

Matte EM, Castilho CS, Miotto RA, Sana DA, Johnson WE, O'Brien SJ, de Freitas TR, Eizirik E.

Genet Mol Biol. 2013 Dec;36(4):586-97. doi: 10.1590/S1415-47572013000400018. Epub 2013 Nov 8.

20.

Molecular data reveal complex hybridization and a cryptic species of neotropical wild cat.

Trigo TC, Schneider A, de Oliveira TG, Lehugeur LM, Silveira L, Freitas TR, Eizirik E.

Curr Biol. 2013 Dec 16;23(24):2528-33. doi: 10.1016/j.cub.2013.10.046. Epub 2013 Nov 27.

21.

Atlantic rainforest's jaguars in decline.

Galetti M, Eizirik E, Beisiegel B, Ferraz K, Cavalcanti S, Srbek-Araujo AC, Crawshaw P, Paviolo A, Galetti PM Jr, Jorge ML, Marinho-Filho J, Vercillo U, Morato R.

Science. 2013 Nov 22;342(6161):930. doi: 10.1126/science.342.6161.930-a. No abstract available.

PMID:
24264975
22.

How the leopard hides its spots: ASIP mutations and melanism in wild cats.

Schneider A, David VA, Johnson WE, O'Brien SJ, Barsh GS, Menotti-Raymond M, Eizirik E.

PLoS One. 2012;7(12):e50386. doi: 10.1371/journal.pone.0050386. Epub 2012 Dec 12.

23.

Specifying and sustaining pigmentation patterns in domestic and wild cats.

Kaelin CB, Xu X, Hong LZ, David VA, McGowan KA, Schmidt-Küntzel A, Roelke ME, Pino J, Pontius J, Cooper GM, Manuel H, Swanson WF, Marker L, Harper CK, van Dyk A, Yue B, Mullikin JC, Warren WC, Eizirik E, Kos L, O'Brien SJ, Barsh GS, Menotti-Raymond M.

Science. 2012 Sep 21;337(6101):1536-41.

24.

Phylogeography and demographic history of the neotropical otter (Lontra longicaudis).

Trinca CS, de Thoisy B, Rosas FC, Waldemarin HF, Koepfli KP, Vianna JA, Eizirik E.

J Hered. 2012 Jul;103(4):479-92. doi: 10.1093/jhered/ess001. Epub 2012 May 15.

PMID:
22589556
25.

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification.

Meredith RW, Janečka JE, Gatesy J, Ryder OA, Fisher CA, Teeling EC, Goodbla A, Eizirik E, Simão TL, Stadler T, Rabosky DL, Honeycutt RL, Flynn JJ, Ingram CM, Steiner C, Williams TL, Robinson TJ, Burk-Herrick A, Westerman M, Ayoub NA, Springer MS, Murphy WJ.

Science. 2011 Oct 28;334(6055):521-4. doi: 10.1126/science.1211028. Epub 2011 Sep 22.

26.

DNA barcoding meets molecular scatology: short mtDNA sequences for standardized species assignment of carnivore noninvasive samples.

Chaves PB, Graeff VG, Lion MB, Oliveira LR, Eizirik E.

Mol Ecol Resour. 2012 Jan;12(1):18-35. doi: 10.1111/j.1755-0998.2011.03056.x. Epub 2011 Aug 31.

PMID:
21883979
27.

Successful carnivore identification with faecal DNA across a fragmented Amazonian landscape.

Michalski F, Valdez FP, Norris D, Zieminski C, Kashivakura CK, Trinca CS, Smith HB, Vynne C, Wasser SK, Metzger JP, Eizirik E.

Mol Ecol Resour. 2011 Sep;11(5):862-71. doi: 10.1111/j.1755-0998.2011.03031.x. Epub 2011 Jun 16.

PMID:
21676206
28.

Conservation genetics of maned wolves in a highly impacted area of the Brazilian Cerrado biome.

Lion MB, Eizirik E, Garda AA, Fontoura-Rodrigues ML, Rodrigues FH, Marinho-Filho JS.

Genetica. 2011 Mar;139(3):369-81. doi: 10.1007/s10709-011-9555-3. Epub 2011 Feb 8.

PMID:
21298553
29.

The effect of habitat fragmentation on the genetic structure of a top predator: loss of diversity and high differentiation among remnant populations of Atlantic Forest jaguars (Panthera onca).

Haag T, Santos AS, Sana DA, Morato RG, Cullen L Jr, Crawshaw PG Jr, De Angelo C, Di Bitetti MS, Salzano FM, Eizirik E.

Mol Ecol. 2010 Nov;19(22):4906-21. doi: 10.1111/j.1365-294X.2010.04856.x. Epub 2010 Oct 12.

PMID:
21040050
30.

Expanded phylogenetic representation of genera Opercularia and Epistylis sheds light on the evolution and higher-level taxonomy of peritrich ciliates (Ciliophora: Peritrichia).

Utz LR, Simão TL, Safi LS, Eizirik E.

J Eukaryot Microbiol. 2010 Sep-Oct;57(5):415-20. doi: 10.1111/j.1550-7408.2010.00497.x. Epub 2010 Aug 3.

PMID:
20707878
31.

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences.

Eizirik E, Murphy WJ, Koepfli KP, Johnson WE, Dragoo JW, Wayne RK, O'Brien SJ.

Mol Phylogenet Evol. 2010 Jul;56(1):49-63. doi: 10.1016/j.ympev.2010.01.033. Epub 2010 Feb 4.

PMID:
20138220
32.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 May 2009-31 July 2009.

Molecular Ecology Resources Primer Development Consortium, Almany GR, DE Arruda MP, Arthofer W, Atallah ZK, Beissinger SR, Berumen ML, Bogdanowicz SM, Brown SD, Bruford MW, Burdine C, Busch JW, Campbell NR, Carey D, Carstens BC, Chu KH, Cubeta MA, Cuda JP, Cui Z, Datnoff LE, Dávila JA, Davis ES, Davis RM, Diekmann OE, Eizirik E, Fargallo JA, Fernandes F, Fukuda H, Gale LR, Gallagher E, Gao Y, Girard P, Godhe A, Gonçalves EC, Gouveia L, Grajczyk AM, Grose MJ, Gu Z, Halldén C, Härnström K, Hemmingsen AH, Holmes G, Huang CH, Huang CC, Hudman SP, Jones GP, Kanetis L, Karunasagar I, Karunasagar I, Keyghobadi N, Klosterman SJ, Klug PE, Koch J, Koopman MM, Köppler K, Koshimizu E, Krumböck S, Kubisiak T, Landis JB, Lasta ML, Lee CY, Li Q, Li SH, Lin RC, Liu M, Liu N, Liu WC, Liu Y, Loiseau A, Luan W, Maruthachalam KK, McCormick HM, Mellick R, Monnahan PJ, Morielle-Versute E, Murray TE, Narum SR, Neufeld K, De Nova PJ, Ojiambo PS, Okamoto N, Othman AS, Overholt WA, Pardini R, Paterson IG, Patty OA, Paxton RJ, Planes S, Porter C, Pratchett MS, Püttker T, Rasic G, Rasool B, Rey O, Riegler M, Riehl C, Roberts JM, Roberts PD, Rochel E, Roe KJ, Rossetto M, Ruzzante DE, Sakamoto T, Saravanan V, Sarturi CR, Schmidt A, Schneider MP, Schuler H, Serb JM, Serrão ET, Shi Y, Silva A, Sin YW, Sommer S, Stauffer C, Strüssmann CA, Subbarao KV, Syms C, Tan F, Tejedor ED, Thorrold SR, Trigiano RN, Trucco MI, Tsuchiya-Jerep MT, Vergara P, Van De Vliet MS, Wadl PA, Wang A, Wang H, Wang RX, Wang X, Wang Y, Weeks AR, Wei F, Werner WJ, Wiley EO, Williams DA, Wilkins RJ, Wisely SM, With KA, Wu D, Yao CT, Yau C, Yeap BK, Zhai BP, Zhan X, Zhang GY, Zhang SY, Zhao R, Zhu L.

Mol Ecol Resour. 2009 Nov;9(6):1460-6. doi: 10.1111/j.1755-0998.2009.02759.x. Epub 2009 Sep 29.

PMID:
21564933
33.

Defining and mapping mammalian coat pattern genes: multiple genomic regions implicated in domestic cat stripes and spots.

Eizirik E, David VA, Buckley-Beason V, Roelke ME, Schäffer AA, Hannah SS, Narfström K, O'Brien SJ, Menotti-Raymond M.

Genetics. 2010 Jan;184(1):267-75. doi: 10.1534/genetics.109.109629. Epub 2009 Oct 26.

34.

Mapping of the domestic cat "SILVER" coat color locus identifies a unique genomic location for silver in mammals.

Menotti-Raymond M, David VA, Eizirik E, Roelke ME, Ghaffari H, O'Brien SJ.

J Hered. 2009 Jul-Aug;100 Suppl 1:S8-13. doi: 10.1093/jhered/esp018. Epub 2009 Apr 27.

35.

A domestic cat X chromosome linkage map and the sex-linked orange locus: mapping of orange, multiple origins and epistasis over nonagouti.

Schmidt-Küntzel A, Nelson G, David VA, Schäffer AA, Eizirik E, Roelke ME, Kehler JS, Hannah SS, O'Brien SJ, Menotti-Raymond M.

Genetics. 2009 Apr;181(4):1415-25. doi: 10.1534/genetics.108.095240. Epub 2009 Feb 2.

36.

Development and testing of an optimized method for DNA-based identification of jaguar (Panthera onca) and puma (Puma concolor) faecal samples for use in ecological and genetic studies.

Haag T, Santos AS, De Angelo C, Srbek-Araujo AC, Sana DA, Morato RG, Salzano FM, Eizirik E.

Genetica. 2009 Jul;136(3):505-12. doi: 10.1007/s10709-008-9347-6. Epub 2009 Jan 10.

PMID:
19137401
37.

An autosomal genetic linkage map of the domestic cat, Felis silvestris catus.

Menotti-Raymond M, David VA, Schäffer AA, Tomlin JF, Eizirik E, Phillip C, Wells D, Pontius JU, Hannah SS, O'Brien SJ.

Genomics. 2009 Apr;93(4):305-13. doi: 10.1016/j.ygeno.2008.11.004. Epub 2008 Dec 13.

38.

Inter-species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil.

Trigo TC, Freitas TR, Kunzler G, Cardoso L, Silva JC, Johnson WE, O'Brien SJ, Bonatto SL, Eizirik E.

Mol Ecol. 2008 Oct;17(19):4317-33. doi: 10.1111/j.1365-294X.2008.03919.x.

PMID:
18785898
39.

Cross-amplification and characterization of 13 tetranucleotide microsatellites in multiple species of Neotropical canids.

DA Fontoura-Rodrigues ML, Lima-Rosa CA, Tchaicka L, Valdez FP, Rodrigues FH, DE Paula RC, Gough MP, Johnson WE, Bonatto SL, Eizirik E.

Mol Ecol Resour. 2008 Jul;8(4):898-900. doi: 10.1111/j.1755-0998.2008.02103.x.

PMID:
21585923
40.

Morphology and placental mammal phylogeny.

Springer MS, Meredith RW, Eizirik E, Teeling E, Murphy WJ.

Syst Biol. 2008 Jun;57(3):499-503. doi: 10.1080/10635150802164504. No abstract available.

PMID:
18570041
41.
42.

Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats.

Kehler JS, David VA, Schäffer AA, Bajema K, Eizirik E, Ryugo DK, Hannah SS, O'Brien SJ, Menotti-Raymond M.

J Hered. 2007 Sep-Oct;98(6):555-66. Epub 2007 Sep 1.

43.

The adequacy of morphology for reconstructing the early history of placental mammals.

Springer MS, Burk-Herrick A, Meredith R, Eizirik E, Teeling E, O'Brien SJ, Murphy WJ.

Syst Biol. 2007 Aug;56(4):673-84. No abstract available.

PMID:
17661234
44.
45.

Phylogeography and population history of the crab-eating fox (Cerdocyon thous).

Tchaicka L, Eizirik E, De Oliveira TG, Cândido JF Jr, Freitas TR.

Mol Ecol. 2007 Feb;16(4):819-38.

PMID:
17284214
46.

Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange.

Koepfli KP, Gompper ME, Eizirik E, Ho CC, Linden L, Maldonado JE, Wayne RK.

Mol Phylogenet Evol. 2007 Jun;43(3):1076-95. Epub 2006 Oct 11.

PMID:
17174109
47.

A homozygous single-base deletion in MLPH causes the dilute coat color phenotype in the domestic cat.

Ishida Y, David VA, Eizirik E, Schäffer AA, Neelam BA, Roelke ME, Hannah SS, O'Brien SJ, Menotti-Raymond M.

Genomics. 2006 Dec;88(6):698-705. doi: 10.1016/j.ygeno.2006.06.006. Epub 2006 Jul 24.

48.

Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix.

Koepfli KP, Jenks SM, Eizirik E, Zahirpour T, Van Valkenburgh B, Wayne RK.

Mol Phylogenet Evol. 2006 Mar;38(3):603-20.

PMID:
16503281
49.

The late Miocene radiation of modern Felidae: a genetic assessment.

Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O'Brien SJ.

Science. 2006 Jan 6;311(5757):73-7.

50.

Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats.

Jae-Heup K, Eizirik E, O'Brien SJ, Johnson WE.

Mitochondrion. 2001 Oct;1(3):279-92.

PMID:
16120284

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