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Items: 1 to 50 of 624

1.

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016.

Garner E, Brown CL, Schwake DO, Rhoads WJ, Arango-Argoty G, Zhang L, Jospin G, Coil DA, Eisen JA, Edwards MA, Pruden A.

Emerg Infect Dis. 2019 Nov;25(11):2013-2020. doi: 10.3201/eid2511.181032.

2.

Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling.

Yamaguchi MS, Ganz HH, Cho AW, Zaw TH, Jospin G, McCartney MM, Davis CE, Eisen JA, Coil DA.

PLoS One. 2019 Sep 13;14(9):e0216846. doi: 10.1371/journal.pone.0216846. eCollection 2019.

3.

Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development.

Ganz J, Melancon E, Wilson C, Amores A, Batzel P, Strader M, Braasch I, Diba P, Kuhlman JA, Postlethwait JH, Eisen JS.

Dev Biol. 2019 Aug 5. pii: S0012-1606(19)30224-6. doi: 10.1016/j.ydbio.2019.08.002. [Epub ahead of print]

PMID:
31394080
4.

Early-Career Scientists Shaping the World.

Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J.

mSystems. 2019 May 7;4(3). pii: e00196-19. doi: 10.1128/mSystems.00196-19. No abstract available.

5.

Network analysis to evaluate the impact of research funding on research community consolidation.

Hicks DJ, Coil DA, Stahmer CG, Eisen JA.

PLoS One. 2019 Jun 18;14(6):e0218273. doi: 10.1371/journal.pone.0218273. eCollection 2019.

6.

Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment.

Coil DA, Jospin G, Darling AE, Wallis C, Davis IJ, Harris S, Eisen JA, Holcombe LJ, O'Flynn C.

PLoS One. 2019 Jun 10;14(6):e0214354. doi: 10.1371/journal.pone.0214354. eCollection 2019.

7.

Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia.

Wilkins LGE, Ettinger CL, Jospin G, Eisen JA.

Sci Rep. 2019 Feb 28;9(1):3059. doi: 10.1038/s41598-019-39576-6.

8.

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria.

Bik HM, Alexiev A, Aulakh SK, Bharadwaj L, Flanagan J, Haggerty JM, Hird SM, Jospin G, Lang JM, Sauder LA, Neufeld JD, Shaver A, Sethi A, Eisen JA, Coil DA.

mSphere. 2019 Feb 20;4(1). pii: e00043-19. doi: 10.1128/mSphere.00043-19.

9.

Directionality of change in obsessive compulsive disorder (OCD) and suicidal ideation over six years in a naturalistic clinical sample.

Brown LA, Wakschal E, Russman-Block S, Boisseau CL, Mancebo MC, Eisen JL, Rasmussen SA.

J Affect Disord. 2019 Feb 15;245:841-847. doi: 10.1016/j.jad.2018.11.006. Epub 2018 Nov 13.

PMID:
30699868
10.

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation.

Rosado PM, Leite DCA, Duarte GAS, Chaloub RM, Jospin G, Nunes da Rocha U, P Saraiva J, Dini-Andreote F, Eisen JA, Bourne DG, Peixoto RS.

ISME J. 2019 Apr;13(4):921-936. doi: 10.1038/s41396-018-0323-6. Epub 2018 Dec 5.

11.

The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status.

Hird SM, Ganz H, Eisen JA, Boyce WM.

mSphere. 2018 Oct 24;3(5). pii: e00382-18. doi: 10.1128/mSphere.00382-18.

12.

Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes.

Spiewak JE, Bain EJ, Liu J, Kou K, Sturiale SL, Patterson LB, Diba P, Eisen JS, Braasch I, Ganz J, Parichy DM.

PLoS Genet. 2018 Sep 18;14(9):e1007538. doi: 10.1371/journal.pgen.1007538. eCollection 2018 Sep.

13.

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota.

Van Deynze A, Zamora P, Delaux PM, Heitmann C, Jayaraman D, Rajasekar S, Graham D, Maeda J, Gibson D, Schwartz KD, Berry AM, Bhatnagar S, Jospin G, Darling A, Jeannotte R, Lopez J, Weimer BC, Eisen JA, Shapiro HY, Ané JM, Bennett AB.

PLoS Biol. 2018 Aug 7;16(8):e2006352. doi: 10.1371/journal.pbio.2006352. eCollection 2018 Aug.

14.

Forebrain Control of Behaviorally Driven Social Orienting in Zebrafish.

Stednitz SJ, McDermott EM, Ncube D, Tallafuss A, Eisen JS, Washbourne P.

Curr Biol. 2018 Aug 6;28(15):2445-2451.e3. doi: 10.1016/j.cub.2018.06.016. Epub 2018 Jul 26.

15.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
16.

Synaptojanin and Endophilin Mediate Neck Formation during Ultrafast Endocytosis.

Watanabe S, Mamer LE, Raychaudhuri S, Luvsanjav D, Eisen J, Trimbuch T, Söhl-Kielczynski B, Fenske P, Milosevic I, Rosenmund C, Jorgensen EM.

Neuron. 2018 Jun 27;98(6):1184-1197.e6. doi: 10.1016/j.neuron.2018.06.005.

17.

Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota.

Horng KR, Ganz HH, Eisen JA, Marks SL.

PeerJ. 2018 May 23;6:e4827. doi: 10.7717/peerj.4827. eCollection 2018.

18.

The Brown Incompleteness Scale (BINCS): Measure development and initial evaluation.

Boisseau CL, Sibrava NJ, Garnaat SL, Mancebo MC, Eisen JL, Rasmussen SA.

J Obsessive Compuls Relat Disord. 2018 Jan;16:66-71. doi: 10.1016/j.jocrd.2017.12.008. Epub 2017 Dec 23.

19.

Image velocimetry and spectral analysis enable quantitative characterization of larval zebrafish gut motility.

Ganz J, Baker RP, Hamilton MK, Melancon E, Diba P, Eisen JS, Parthasarathy R.

Neurogastroenterol Motil. 2018 Sep;30(9):e13351. doi: 10.1111/nmo.13351. Epub 2018 May 2.

20.

Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial communities associated with antibiotic treatment.

Dahlhausen KE, Doroud L, Firl AJ, Polkinghorne A, Eisen JA.

PeerJ. 2018 Mar 12;6:e4452. doi: 10.7717/peerj.4452. eCollection 2018.

21.

Correction: A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2018 Feb 27;5. pii: e4029/correction-1. doi: 10.7717/peerj.4029/correction-1. eCollection 2018.

22.

A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2017 Dec 5;5:e4029. doi: 10.7717/peerj.4029. eCollection 2017. Erratum in: PeerJ. 2018 Feb 27;5:.

23.

Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling.

Troll JV, Hamilton MK, Abel ML, Ganz J, Bates JM, Stephens WZ, Melancon E, van der Vaart M, Meijer AH, Distel M, Eisen JS, Guillemin K.

Development. 2018 Feb 23;145(4). pii: dev155317. doi: 10.1242/dev.155317.

24.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

25.

Gamma Ventral Capsulotomy in Intractable Obsessive-Compulsive Disorder.

Rasmussen SA, Noren G, Greenberg BD, Marsland R, McLaughlin NC, Malloy PJ, Salloway SP, Strong DR, Eisen JL, Jenike MA, Rauch SL, Baer L, Lindquist C.

Biol Psychiatry. 2018 Sep 1;84(5):355-364. doi: 10.1016/j.biopsych.2017.11.034. Epub 2017 Dec 15.

26.

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla.

Becraft ED, Woyke T, Jarett J, Ivanova N, Godoy-Vitorino F, Poulton N, Brown JM, Brown J, Lau MCY, Onstott T, Eisen JA, Moser D, Stepanauskas R.

Front Microbiol. 2017 Nov 28;8:2264. doi: 10.3389/fmicb.2017.02264. eCollection 2017.

27.

Guidelines for morpholino use in zebrafish.

Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, Meng A, Mochizuki N, Panula P, Moens CB.

PLoS Genet. 2017 Oct 19;13(10):e1007000. doi: 10.1371/journal.pgen.1007000. eCollection 2017 Oct. No abstract available.

28.

The impact of lifetime PTSD on the seven-year course and clinical characteristics of OCD.

Ojserkis R, Boisseau CL, Reddy MK, Mancebo MC, Eisen JL, Rasmussen SA.

Psychiatry Res. 2017 Dec;258:78-82. doi: 10.1016/j.psychres.2017.09.042. Epub 2017 Sep 19.

29.

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria.

Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH.

Front Microbiol. 2017 Sep 4;8:1623. doi: 10.3389/fmicb.2017.01623. eCollection 2017.

30.

Microbiome succession during ammonification in eelgrass bed sediments.

Ettinger CL, Williams SL, Abbott JM, Stachowicz JJ, Eisen JA.

PeerJ. 2017 Aug 16;5:e3674. doi: 10.7717/peerj.3674. eCollection 2017.

31.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Erratum in: Nat Biotechnol. 2018 Feb 6;36(2):196. Nat Biotechnol. 2018 Jul 6;36(7):660.

32.

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC.

Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12.

33.

Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology.

Mukhopadhyay R, Joaquin J, Hogue R, Fitzgerald S, Jospin G, Mars K, Eisen JA, Chaturvedi V.

Genome Announc. 2017 May 4;5(18). pii: e00317-17. doi: 10.1128/genomeA.00317-17.

34.

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge.

Ettinger CL, Voerman SE, Lang JM, Stachowicz JJ, Eisen JA.

PeerJ. 2017 Apr 27;5:e3246. doi: 10.7717/peerj.3246. eCollection 2017.

35.

A cross-cultural clinical comparison between subjects with obsessive-compulsive disorder from the United States and Brazil.

Medeiros GC, Torres AR, Boisseau CL, Leppink EW, Eisen JL, Fontenelle LF, do Rosário MC, Mancebo MC, Rasmussen SA, Ferrão YA, Grant JE.

Psychiatry Res. 2017 Aug;254:104-111. doi: 10.1016/j.psychres.2017.04.024. Epub 2017 Apr 12.

36.

Gut Check: The evolution of an educational board game.

Coil DA, Ettinger CL, Eisen JA.

PLoS Biol. 2017 Apr 28;15(4):e2001984. doi: 10.1371/journal.pbio.2001984. eCollection 2017 Apr.

37.

Complete Genome Sequence of a Paenalcaligenes hominis Strain Isolated from a Paraplegic Patient with Neurogenic Bladder Using Single-Molecule Real-Time Sequencing Technology.

Mukhopadhyay R, Joaquin J, Hogue R, Kilaru A, Jospin G, Mars K, Eisen JA, Chaturvedi V.

Genome Announc. 2017 Apr 27;5(17). pii: e00252-17. doi: 10.1128/genomeA.00252-17.

38.

Correction: A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications.

Fowler DK, Stewart S, Seredick S, Eisen JS, Stankunas K, Washbourne P.

PLoS One. 2017 Apr 20;12(4):e0176543. doi: 10.1371/journal.pone.0176543. eCollection 2017.

39.

Global-Scale Structure of the Eelgrass Microbiome.

Fahimipour AK, Kardish MR, Lang JM, Green JL, Eisen JA, Stachowicz JJ.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e03391-16. doi: 10.1128/AEM.03391-16. Print 2017 Jun 15.

41.

Research priorities for harnessing plant microbiomes in sustainable agriculture.

Busby PE, Soman C, Wagner MR, Friesen ML, Kremer J, Bennett A, Morsy M, Eisen JA, Leach JE, Dangl JL.

PLoS Biol. 2017 Mar 28;15(3):e2001793. doi: 10.1371/journal.pbio.2001793. eCollection 2017 Mar.

42.

Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac.

Dahms PA, Martin AL, Ganz HH, Eisen JA, Coil DA.

Genome Announc. 2017 Mar 23;5(12). pii: e00034-17. doi: 10.1128/genomeA.00034-17.

43.

Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses.

Ganz HH, Doroud L, Firl AJ, Hird SM, Eisen JA, Boyce WM.

mSystems. 2017 Feb 28;2(1). pii: e00188-16. doi: 10.1128/mSystems.00188-16. eCollection 2017 Jan-Feb.

44.

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.

Tokajian S, Salloum T, Eisen JA, Jospin G, Farra A, Mokhbat JE, Coil DA.

Future Microbiol. 2017 Mar;12:213-226. doi: 10.2217/fmb-2017-0171. Epub 2017 Feb 27.

PMID:
28262042
45.

Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2528 Isolated from an Indoor Track Facility.

Klein BA, Lemon KP, Gajare P, Jospin G, Eisen JA, Coil DA.

Genome Announc. 2017 Feb 23;5(8). pii: e01652-16. doi: 10.1128/genomeA.01652-16.

46.

The enteric nervous system promotes intestinal health by constraining microbiota composition.

Rolig AS, Mittge EK, Ganz J, Troll JV, Melancon E, Wiles TJ, Alligood K, Stephens WZ, Eisen JS, Guillemin K.

PLoS Biol. 2017 Feb 16;15(2):e2000689. doi: 10.1371/journal.pbio.2000689. eCollection 2017 Feb.

47.

Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria).

Kincheloe GN, Eisen JA, Coil DA.

Genome Announc. 2017 Feb 9;5(6). pii: e01599-16. doi: 10.1128/genomeA.01599-16.

48.

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TBK, Varghese N, Hadjithomas M, Ivanova NN, Göker M, Pillay M, Eisen JA, Woyke T, Klenk HP, Kyrpides NC, Li WJ.

Stand Genomic Sci. 2017 Feb 3;12:21. doi: 10.1186/s40793-017-0226-6. eCollection 2017.

50.

Symptom subtype and quality of life in obsessive-compulsive disorder.

Schwartzman CM, Boisseau CL, Sibrava NJ, Mancebo MC, Eisen JL, Rasmussen SA.

Psychiatry Res. 2017 Mar;249:307-310. doi: 10.1016/j.psychres.2017.01.025. Epub 2017 Jan 20.

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