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Items: 45

1.

Novel Autotrophic Organisms Contribute Significantly to the Internal Carbon Cycling Potential of a Boreal Lake.

Peura S, Buck M, Aalto SL, Morales SE, Nykänen H, Eiler A.

mBio. 2018 Aug 14;9(4). pii: e00916-18. doi: 10.1128/mBio.00916-18.

2.

Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria.

Garcia SL, Buck M, Hamilton JJ, Wurzbacher C, Grossart HP, McMahon KD, Eiler A.

mSphere. 2018 May 30;3(3). pii: e00202-18. doi: 10.1128/mSphere.00202-18. Print 2018 Jun 27.

3.

Environmental DNA (eDNA) detects the pool frog (Pelophylax lessonae) at times when traditional monitoring methods are insensitive.

Eiler A, Löfgren A, Hjerne O, Nordén S, Saetre P.

Sci Rep. 2018 Apr 3;8(1):5452. doi: 10.1038/s41598-018-23740-5.

4.

Effects of predation stress and food ration on perch gut microbiota.

Zha Y, Eiler A, Johansson F, Svanbäck R.

Microbiome. 2018 Feb 6;6(1):28. doi: 10.1186/s40168-018-0400-0.

5.

Influence of pulsed and continuous substrate inputs on freshwater bacterial community composition and functioning in bioreactors.

Ricão Canelhas M, Andersson M, Eiler A, Lindström ES, Bertilsson S.

Environ Microbiol. 2017 Dec;19(12):5078-5087. doi: 10.1111/1462-2920.13979. Epub 2017 Dec 4.

PMID:
29124844
6.

Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions.

Hubalek V, Buck M, Tan B, Foght J, Wendeberg A, Berry D, Bertilsson S, Eiler A.

mSystems. 2017 Oct 31;2(5). pii: e00038-17. doi: 10.1128/mSystems.00038-17. eCollection 2017 Sep-Oct.

7.

Multiparametric monitoring of microbial faecal pollution reveals the dominance of human contamination along the whole Danube River.

Kirschner AKT, Reischer GH, Jakwerth S, Savio D, Ixenmaier S, Toth E, Sommer R, Mach RL, Linke R, Eiler A, Kolarevic S, Farnleitner AH.

Water Res. 2017 Nov 1;124:543-555. doi: 10.1016/j.watres.2017.07.052. Epub 2017 Jul 22.

8.

Comparison of four DNA extraction methods for comprehensive assessment of 16S rRNA bacterial diversity in marine biofilms using high-throughput sequencing.

Corcoll N, Österlund T, Sinclair L, Eiler A, Kristiansson E, Backhaus T, Eriksson KM.

FEMS Microbiol Lett. 2017 Aug 1;364(14). doi: 10.1093/femsle/fnx139.

PMID:
28673033
9.

Seqenv: linking sequences to environments through text mining.

Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJL, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E.

PeerJ. 2016 Dec 20;4:e2690. doi: 10.7717/peerj.2690. eCollection 2016.

10.

Distinct Anaerobic Bacterial Consumers of Cellobiose-Derived Carbon in Boreal Fens with Different CO2/CH4 Production Ratios.

Juottonen H, Eiler A, Biasi C, Tuittila ES, Yrjälä K, Fritze H.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02533-16. doi: 10.1128/AEM.02533-16. Print 2017 Feb 15.

11.

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2556. doi: 10.1038/ismej.2016.94. No abstract available.

12.

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2447-58. doi: 10.1038/ismej.2016.36. Epub 2016 Mar 29. Erratum in: ISME J. 2016 Oct;10(10):2556.

13.

Remnants of marine bacterial communities can be retrieved from deep sediments in lakes of marine origin.

Langenheder S, Comte J, Zha Y, Samad MS, Sinclair L, Eiler A, Lindström ES.

Environ Microbiol Rep. 2016 Aug;8(4):479-85. doi: 10.1111/1758-2229.12392. Epub 2016 May 11.

PMID:
26929161
14.

Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria.

Eiler A, Mondav R, Sinclair L, Fernandez-Vidal L, Scofield DG, Schwientek P, Martinez-Garcia M, Torrents D, McMahon KD, Andersson SG, Stepanauskas R, Woyke T, Bertilsson S.

ISME J. 2016 Aug;10(8):1902-14. doi: 10.1038/ismej.2015.260. Epub 2016 Jan 19.

15.

Are freshwater bacterioplankton indifferent to variable types of amino acid substrates?

Ricão Canelhas M, Eiler A, Bertilsson S.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiw005. doi: 10.1093/femsec/fiw005. Epub 2016 Jan 5.

PMID:
26738554
16.

Auxotrophy and intrapopulation complementary in the 'interactome' of a cultivated freshwater model community.

Garcia SL, Buck M, McMahon KD, Grossart HP, Eiler A, Warnecke F.

Mol Ecol. 2015 Sep;24(17):4449-59. doi: 10.1111/mec.13319. Epub 2015 Aug 8.

PMID:
26179741
17.

Metagenomic insights into strategies of aerobic and anaerobic carbon and nitrogen transformation in boreal lakes.

Peura S, Sinclair L, Bertilsson S, Eiler A.

Sci Rep. 2015 Jul 10;5:12102. doi: 10.1038/srep12102.

18.

Bacterial diversity along a 2600 km river continuum.

Savio D, Sinclair L, Ijaz UZ, Parajka J, Reischer GH, Stadler P, Blaschke AP, Blöschl G, Mach RL, Kirschner AK, Farnleitner AH, Eiler A.

Environ Microbiol. 2015 Dec;17(12):4994-5007. doi: 10.1111/1462-2920.12886. Epub 2015 Jun 11.

19.

Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform.

Sinclair L, Osman OA, Bertilsson S, Eiler A.

PLoS One. 2015 Feb 3;10(2):e0116955. doi: 10.1371/journal.pone.0116955. eCollection 2015.

20.

Resistant microbial cooccurrence patterns inferred by network topology.

Peura S, Bertilsson S, Jones RI, Eiler A.

Appl Environ Microbiol. 2015 Mar;81(6):2090-7. doi: 10.1128/AEM.03660-14. Epub 2015 Jan 9.

21.

Can marine bacteria be recruited from freshwater sources and the air?

Comte J, Lindström ES, Eiler A, Langenheder S.

ISME J. 2014 Dec;8(12):2423-30. doi: 10.1038/ismej.2014.89. Epub 2014 Jun 6.

22.

Host-specificity and dynamics in bacterial communities associated with Bloom-forming freshwater phytoplankton.

Bagatini IL, Eiler A, Bertilsson S, Klaveness D, Tessarolli LP, Vieira AA.

PLoS One. 2014 Jan 20;9(1):e85950. doi: 10.1371/journal.pone.0085950. eCollection 2014.

23.

Disturbance induced decoupling between host genetics and composition of the associated microbiome.

Wegner KM, Volkenborn N, Peter H, Eiler A.

BMC Microbiol. 2013 Nov 9;13:252. doi: 10.1186/1471-2180-13-252.

24.

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics.

Eiler A, Zaremba-Niedzwiedzka K, Martínez-García M, McMahon KD, Stepanauskas R, Andersson SG, Bertilsson S.

Environ Microbiol. 2014 Sep;16(9):2682-98. doi: 10.1111/1462-2920.12301. Epub 2013 Nov 12.

25.

Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin.

Fortunato CS, Eiler A, Herfort L, Needoba JA, Peterson TD, Crump BC.

ISME J. 2013 Oct;7(10):1899-911. doi: 10.1038/ismej.2013.79. Epub 2013 May 30.

26.

Coastal bacterioplankton community dynamics in response to a natural disturbance.

Yeo SK, Huggett MJ, Eiler A, Rappé MS.

PLoS One. 2013;8(2):e56207. doi: 10.1371/journal.pone.0056207. Epub 2013 Feb 7.

27.

Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach.

Eiler A, Drakare S, Bertilsson S, Pernthaler J, Peura S, Rofner C, Simek K, Yang Y, Znachor P, Lindström ES.

PLoS One. 2013;8(1):e53516. doi: 10.1371/journal.pone.0053516. Epub 2013 Jan 22.

28.

Bacterial and phytoplankton responses to nutrient amendments in a boreal lake differ according to season and to taxonomic resolution.

Peura S, Eiler A, Hiltunen M, Nykänen H, Tiirola M, Jones RI.

PLoS One. 2012;7(6):e38552. doi: 10.1371/journal.pone.0038552. Epub 2012 Jun 8.

29.

Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1.

Peura S, Eiler A, Bertilsson S, Nykänen H, Tiirola M, Jones RI.

ISME J. 2012 Sep;6(9):1640-52. doi: 10.1038/ismej.2012.21. Epub 2012 Mar 15.

30.

Coherent dynamics and association networks among lake bacterioplankton taxa.

Eiler A, Heinrich F, Bertilsson S.

ISME J. 2012 Feb;6(2):330-42. doi: 10.1038/ismej.2011.113. Epub 2011 Sep 1.

31.

Non-random assembly of bacterioplankton communities in the subtropical north pacific ocean.

Eiler A, Hayakawa DH, Rappé MS.

Front Microbiol. 2011 Jul 1;2:140. doi: 10.3389/fmicb.2011.00140. eCollection 2011.

32.

A guide to the natural history of freshwater lake bacteria.

Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S.

Microbiol Mol Biol Rev. 2011 Mar;75(1):14-49. doi: 10.1128/MMBR.00028-10. Review.

33.

High ratio of bacteriochlorophyll biosynthesis genes to chlorophyll biosynthesis genes in bacteria of humic lakes.

Eiler A, Beier S, Säwström C, Karlsson J, Bertilsson S.

Appl Environ Microbiol. 2009 Nov;75(22):7221-8. doi: 10.1128/AEM.00960-09. Epub 2009 Oct 2.

34.

Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre.

Eiler A, Hayakawa DH, Church MJ, Karl DM, Rappé MS.

Environ Microbiol. 2009 Sep;11(9):2291-300. doi: 10.1111/j.1462-2920.2009.01954.x. Epub 2009 Jun 1.

PMID:
19490029
35.

Links between bacterial production, amino-acid utilization and community composition in productive lakes.

Bertilsson S, Eiler A, Nordqvist A, Jørgensen NO.

ISME J. 2007 Oct;1(6):532-44. Epub 2007 Aug 2.

PMID:
18043654
36.

Does ecosystem size determine aquatic bacterial richness? Comment.

Lindström ES, Eiler A, Langenheder S, Bertilsson S, Drakare S, Ragnarsson H, Tranvik LJ.

Ecology. 2007 Jan;88(1):252-3; discussion 253-5. No abstract available.

PMID:
17489473
37.
38.

Growth response of Vibrio cholerae and other Vibrio spp. to cyanobacterial dissolved organic matter and temperature in brackish water.

Eiler A, Gonzalez-Rey C, Allen S, Bertilsson S.

FEMS Microbiol Ecol. 2007 Jun;60(3):411-8. Epub 2007 Mar 26.

39.

Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences.

Eiler A.

Appl Environ Microbiol. 2006 Dec;72(12):7431-7. Epub 2006 Oct 6. Review. No abstract available.

40.
41.

Detection and quantification of Vibrio populations using denaturant gradient gel electrophoresis.

Eiler A, Bertilsson S.

J Microbiol Methods. 2006 Nov;67(2):339-48. Epub 2006 May 30.

PMID:
16730823
42.

Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes.

Eiler A, Bertilsson S.

Environ Microbiol. 2004 Dec;6(12):1228-43. Erratum in: Environ Microbiol. 2007 Mar;9(3):838.

PMID:
15560821
43.

Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations.

Eiler A, Langenheder S, Bertilsson S, Tranvik LJ.

Appl Environ Microbiol. 2003 Jul;69(7):3701-9.

44.

Factors controlling extremely productive heterotrophic bacterial communities in shallow soda pools.

Eiler A, Farnleitner AH, Zechmeister TC, Herzig A, Hurban C, Wesner W, Krachler R, Velimirov B, Kirschner AK.

Microb Ecol. 2003 Jul;46(1):43-54. Epub 2003 May 13.

PMID:
12739080
45.

Extremely productive microbial communities in shallow saline pools respond immediately to changing meteorological conditions.

Kirschner AK, Eiler A, Zechmeister TC, Velimirov B, Herzig A, Mach R, Farnleitner AH.

Environ Microbiol. 2002 Sep;4(9):546-55.

PMID:
12220412

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