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Items: 19

1.

Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP - A Bioinformatics Pipeline for Analyzing nifH Amplicon Data.

Angel R, Nepel M, Panhölzl C, Schmidt H, Herbold CW, Eichorst SA, Woebken D.

Front Microbiol. 2018 Apr 30;9:703. doi: 10.3389/fmicb.2018.00703. eCollection 2018.

2.

Peatland Acidobacteria with a dissimilatory sulfur metabolism.

Hausmann B, Pelikan C, Herbold CW, Köstlbacher S, Albertsen M, Eichorst SA, Glavina Del Rio T, Huemer M, Nielsen PH, Rattei T, Stingl U, Tringe SG, Trojan D, Wentrup C, Woebken D, Pester M, Loy A.

ISME J. 2018 Jun;12(7):1729-1742. doi: 10.1038/s41396-018-0077-1. Epub 2018 Feb 23.

3.

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments.

Eichorst SA, Trojan D, Roux S, Herbold C, Rattei T, Woebken D.

Environ Microbiol. 2018 Mar;20(3):1041-1063. doi: 10.1111/1462-2920.14043. Epub 2018 Mar 12.

4.

A bacterial pioneer produces cellulase complexes that persist through community succession.

Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, Petzold CJ, Gladden JM, Simmons BA, Singer SW.

Nat Microbiol. 2018 Jan;3(1):99-107. doi: 10.1038/s41564-017-0052-z. Epub 2017 Nov 6.

5.

Application of stable-isotope labelling techniques for the detection of active diazotrophs.

Angel R, Panhölzl C, Gabriel R, Herbold C, Wanek W, Richter A, Eichorst SA, Woebken D.

Environ Microbiol. 2018 Jan;20(1):44-61. doi: 10.1111/1462-2920.13954. Epub 2017 Dec 15.

6.

Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage.

Hiras J, Wu YW, Eichorst SA, Simmons BA, Singer SW.

ISME J. 2016 Apr;10(4):833-45. doi: 10.1038/ismej.2015.158. Epub 2015 Sep 1.

7.

Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.

Eichorst SA, Strasser F, Woyke T, Schintlmeister A, Wagner M, Woebken D.

FEMS Microbiol Ecol. 2015 Oct;91(10). pii: fiv106. doi: 10.1093/femsec/fiv106. Epub 2015 Aug 30.

8.

Substrate-Specific Development of Thermophilic Bacterial Consortia by Using Chemically Pretreated Switchgrass.

Eichorst SA, Joshua C, Sathitsuksanoh N, Singh S, Simmons BA, Singer SW.

Appl Environ Microbiol. 2014 Dec;80(23):7423-32. doi: 10.1128/AEM.02795-14. Epub 2014 Sep 26.

9.

Nitrogen fertilization has a stronger effect on soil nitrogen-fixing bacterial communities than elevated atmospheric CO2.

Berthrong ST, Yeager CM, Gallegos-Graves L, Steven B, Eichorst SA, Jackson RB, Kuske CR.

Appl Environ Microbiol. 2014 May;80(10):3103-12. doi: 10.1128/AEM.04034-13. Epub 2014 Mar 7.

10.

Community dynamics of cellulose-adapted thermophilic bacterial consortia.

Eichorst SA, Varanasi P, Stavila V, Zemla M, Auer M, Singh S, Simmons BA, Singer SW.

Environ Microbiol. 2013 Sep;15(9):2573-87. doi: 10.1111/1462-2920.12159. Epub 2013 Jun 13.

PMID:
23763762
11.

A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil.

Gans JD, Dunbar J, Eichorst SA, Gallegos-Graves LV, Wolinsky M, Kuske CR.

Nucleic Acids Res. 2012 Jul;40(12):e96. doi: 10.1093/nar/gks238. Epub 2012 Mar 20.

12.

Identification of cellulose-responsive bacterial and fungal communities in geographically and edaphically different soils by using stable isotope probing.

Eichorst SA, Kuske CR.

Appl Environ Microbiol. 2012 Apr;78(7):2316-27. doi: 10.1128/AEM.07313-11. Epub 2012 Jan 27.

13.

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide.

Dunbar J, Eichorst SA, Gallegos-Graves LV, Silva S, Xie G, Hengartner NW, Evans RD, Hungate BA, Jackson RB, Megonigal JP, Schadt CW, Vilgalys R, Zak DR, Kuske CR.

Environ Microbiol. 2012 May;14(5):1145-58. doi: 10.1111/j.1462-2920.2011.02695.x. Epub 2012 Jan 20.

14.

Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes.

Liu KL, Porras-Alfaro A, Kuske CR, Eichorst SA, Xie G.

Appl Environ Microbiol. 2012 Mar;78(5):1523-33. doi: 10.1128/AEM.06826-11. Epub 2011 Dec 22.

15.

Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia.

Gladden JM, Eichorst SA, Hazen TC, Simmons BA, Singer SW.

Biotechnol Bioeng. 2012 May;109(5):1140-5. doi: 10.1002/bit.24388. Epub 2011 Dec 12.

PMID:
22125273
16.

Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.

Challacombe JF, Eichorst SA, Hauser L, Land M, Xie G, Kuske CR.

PLoS One. 2011;6(9):e24882. doi: 10.1371/journal.pone.0024882. Epub 2011 Sep 15.

17.

Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria.

Eichorst SA, Kuske CR, Schmidt TM.

Appl Environ Microbiol. 2011 Jan;77(2):586-96. doi: 10.1128/AEM.01080-10. Epub 2010 Nov 19.

18.

Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria.

Eichorst SA, Breznak JA, Schmidt TM.

Appl Environ Microbiol. 2007 Apr;73(8):2708-17. Epub 2007 Feb 9.

19.

New strategies for cultivation and detection of previously uncultured microbes.

Stevenson BS, Eichorst SA, Wertz JT, Schmidt TM, Breznak JA.

Appl Environ Microbiol. 2004 Aug;70(8):4748-55.

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