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TIP60/KAT5 is required for neuronal viability in hippocampal CA1.

Urban I, Kerimoglu C, Sakib MS, Wang H, Benito E, Thaller C, Zhou X, Yan J, Fischer A, Eichele G.

Sci Rep. 2019 Nov 7;9(1):16173. doi: 10.1038/s41598-019-50927-1.


Acetylation of BMAL1 by TIP60 controls BRD4-P-TEFb recruitment to circadian promoters.

Petkau N, Budak H, Zhou X, Oster H, Eichele G.

Elife. 2019 Jul 11;8. pii: e43235. doi: 10.7554/eLife.43235.


The diphenylpyrazole compound anle138b blocks Aβ channels and rescues disease phenotypes in a mouse model for amyloid pathology.

Martinez Hernandez A, Urbanke H, Gillman AL, Lee J, Ryazanov S, Agbemenyah HY, Benito E, Jain G, Kaurani L, Grigorian G, Leonov A, Rezaei-Ghaleh N, Wilken P, Arce FT, Wagner J, Fuhrmann M, Caruana M, Camilleri A, Vassallo N, Zweckstetter M, Benz R, Giese A, Schneider A, Korte M, Lal R, Griesinger C, Eichele G, Fischer A.

EMBO Mol Med. 2018 Jan;10(1):32-47. doi: 10.15252/emmm.201707825.


Genetic background-dependent effects of murine micro RNAs on circadian clock function.

Kiessling S, Ucar A, Chowdhury K, Oster H, Eichele G.

PLoS One. 2017 Apr 27;12(4):e0176547. doi: 10.1371/journal.pone.0176547. eCollection 2017.


Decrease in newly generated oligodendrocytes leads to motor dysfunctions and changed myelin structures that can be rescued by transplanted cells.

Schneider S, Gruart A, Grade S, Zhang Y, Kröger S, Kirchhoff F, Eichele G, Delgado García JM, Dimou L.

Glia. 2016 Dec;64(12):2201-2218. doi: 10.1002/glia.23055. Epub 2016 Sep 12.


Cilia-based flow network in the brain ventricles.

Faubel R, Westendorf C, Bodenschatz E, Eichele G.

Science. 2016 Jul 8;353(6295):176-8. doi: 10.1126/science.aae0450.


A compendium of expression patterns of cholesterol biosynthetic enzymes in the mouse embryo.

Şişecioğlu M, Budak H, Geffers L, Çankaya M, Çiftci M, Thaller C, Eichele G, Küfrevioğlu Öİ, Özdemir H.

J Lipid Res. 2015 Aug;56(8):1551-9. doi: 10.1194/jlr.M059634. Epub 2015 Jun 24.


Mice lacking the cerebral cortex develop normal song: insights into the foundations of vocal learning.

Hammerschmidt K, Whelan G, Eichele G, Fischer J.

Sci Rep. 2015 Mar 6;5:8808. doi: 10.1038/srep08808.


A digital atlas of ion channel expression patterns in the two-week-old rat brain.

Shcherbatyy V, Carson J, Yaylaoglu M, Jäckle K, Grabbe F, Brockmeyer M, Yavuz H, Eichele G.

Neuroinformatics. 2015 Jan;13(1):111-25. doi: 10.1007/s12021-014-9247-0.


The light-dark cycle controls peripheral rhythmicity in mice with a genetically ablated suprachiasmatic nucleus clock.

Husse J, Leliavski A, Tsang AH, Oster H, Eichele G.

FASEB J. 2014 Nov;28(11):4950-60. doi: 10.1096/fj.14-256594. Epub 2014 Jul 25.


A computational approach to estimate interorgan metabolic transport in a mammal.

Cui X, Geffers L, Eichele G, Yan J.

PLoS One. 2014 Jun 27;9(6):e100963. doi: 10.1371/journal.pone.0100963. eCollection 2014.


Ear2 deletion causes early memory and learning deficits in APP/PS1 mice.

Kummer MP, Hammerschmidt T, Martinez A, Terwel D, Eichele G, Witten A, Figura S, Stoll M, Schwartz S, Pape HC, Schultze JL, Weinshenker D, Heneka MT, Urban I.

J Neurosci. 2014 Jun 25;34(26):8845-54. doi: 10.1523/JNEUROSCI.4027-13.2014. Erratum in: J Neurosci. 2015 Feb 4;35(5):2321. Urban, Inga [Added].


SorCS2 regulates dopaminergic wiring and is processed into an apoptotic two-chain receptor in peripheral glia.

Glerup S, Olsen D, Vaegter CB, Gustafsen C, Sjoegaard SS, Hermey G, Kjolby M, Molgaard S, Ulrichsen M, Boggild S, Skeldal S, Fjorback AN, Nyengaard JR, Jacobsen J, Bender D, Bjarkam CR, Sørensen ES, Füchtbauer EM, Eichele G, Madsen P, Willnow TE, Petersen CM, Nykjaer A.

Neuron. 2014 Jun 4;82(5):1074-87. doi: 10.1016/j.neuron.2014.04.022.


Circadian clock genes Per1 and Per2 regulate the response of metabolism-associated transcripts to sleep disruption.

Husse J, Hintze SC, Eichele G, Lehnert H, Oster H.

PLoS One. 2012;7(12):e52983. doi: 10.1371/journal.pone.0052983. Epub 2012 Dec 28.


PKCγ participates in food entrainment by regulating BMAL1.

Zhang L, Abraham D, Lin ST, Oster H, Eichele G, Fu YH, Ptáček LJ.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20679-84. doi: 10.1073/pnas.1218699110. Epub 2012 Nov 26.


METscout: a pathfinder exploring the landscape of metabolites, enzymes and transporters.

Geffers L, Tetzlaff B, Cui X, Yan J, Eichele G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1047-54. doi: 10.1093/nar/gks886. Epub 2012 Sep 27.


Web-based digital gene expression atlases for the mouse.

Geffers L, Herrmann B, Eichele G.

Mamm Genome. 2012 Oct;23(9-10):525-38. doi: 10.1007/s00335-012-9413-3. Epub 2012 Aug 31. Review.


The non-redundant function of cohesin acetyltransferase Esco2: some answers and new questions.

Whelan G, Kreidl E, Peters JM, Eichele G.

Nucleus. 2012 Jul 1;3(4):330-4. Epub 2012 May 22. Review.


Differential gene expression in migratory streams of cortical interneurons.

Antypa M, Faux C, Eichele G, Parnavelas JG, Andrews WD.

Eur J Neurosci. 2011 Nov;34(10):1584-94. doi: 10.1111/j.1460-9568.2011.07896.x.


Cohesin acetyltransferase Esco2 is a cell viability factor and is required for cohesion in pericentric heterochromatin.

Whelan G, Kreidl E, Wutz G, Egner A, Peters JM, Eichele G.

EMBO J. 2012 Jan 4;31(1):71-82. doi: 10.1038/emboj.2011.381. Epub 2011 Nov 18.


Synaptotagmin10-Cre, a driver to disrupt clock genes in the SCN.

Husse J, Zhou X, Shostak A, Oster H, Eichele G.

J Biol Rhythms. 2011 Oct;26(5):379-89. doi: 10.1177/0748730411415363.


A high-resolution anatomical atlas of the transcriptome in the mouse embryo.

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A.

PLoS Biol. 2011 Jan 18;9(1):e1000582. doi: 10.1371/journal.pbio.1000582.


High-throughput analysis of gene expression on tissue sections by in situ hybridization.

Eichele G, Diez-Roux G.

Methods. 2011 Apr;53(4):417-23. doi: 10.1016/j.ymeth.2010.12.020. Epub 2010 Dec 23.


Adrenal glucocorticoids have a key role in circadian resynchronization in a mouse model of jet lag.

Kiessling S, Eichele G, Oster H.

J Clin Invest. 2010 Jul;120(7):2600-9. doi: 10.1172/JCI41192. Epub 2010 Jun 23.


Identification of novel spinal cholinergic genetic subtypes disclose Chodl and Pitx2 as markers for fast motor neurons and partition cells.

Enjin A, Rabe N, Nakanishi ST, Vallstedt A, Gezelius H, Memic F, Lind M, Hjalt T, Tourtellotte WG, Bruder C, Eichele G, Whelan PJ, Kullander K.

J Comp Neurol. 2010 Jun 15;518(12):2284-304. doi: 10.1002/cne.22332.


Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.

Carson J, Ju T, Bello M, Thaller C, Warren J, Kakadiaris IA, Chiu W, Eichele G.

Methods. 2010 Feb;50(2):85-95. doi: 10.1016/j.ymeth.2009.08.005. Epub 2009 Aug 19.


The endogenous retinoid metabolite S-4-oxo-9-cis-13,14-dihydro-retinoic acid activates retinoic acid receptor signalling both in vitro and in vivo.

Schuchardt JP, Wahlström D, Rüegg J, Giese N, Stefan M, Hopf H, Pongratz I, Håkansson H, Eichele G, Pettersson K, Nau H.

FEBS J. 2009 Jun;276(11):3043-59. doi: 10.1111/j.1742-4658.2009.07023.x. Epub 2009 Apr 22.


The nuclear orphan receptor NR2F6 suppresses lymphocyte activation and T helper 17-dependent autoimmunity.

Hermann-Kleiter N, Gruber T, Lutz-Nicoladoni C, Thuille N, Fresser F, Labi V, Schiefermeier N, Warnecke M, Huber L, Villunger A, Eichele G, Kaminski S, Baier G.

Immunity. 2008 Aug 15;29(2):205-16. doi: 10.1016/j.immuni.2008.06.008.


Disturbed clockwork resetting in Sharp-1 and Sharp-2 single and double mutant mice.

Rossner MJ, Oster H, Wichert SP, Reinecke L, Wehr MC, Reinecke J, Eichele G, Taneja R, Nave KA.

PLoS One. 2008 Jul 23;3(7):e2762. doi: 10.1371/journal.pone.0002762.


Sleep apnoea: time to consider clock genes.

Andreas S, Eichele G.

Eur Respir J. 2008 Jul;32(1):1-2. doi: 10.1183/09031936.00056308. No abstract available.


Regulatory pathway analysis by high-throughput in situ hybridization.

Visel A, Carson J, Oldekamp J, Warnecke M, Jakubcakova V, Zhou X, Shaw CA, Alvarez-Bolado G, Eichele G.

PLoS Genet. 2007 Oct;3(10):1867-83.


An analysis of expression patterns of genes encoding proteins with catalytic activities.

Cankaya M, Hernandez AM, Ciftci M, Beydemir S, Ozdemir H, Budak H, Gulcin I, Comakli V, Emircupani T, Ekinci D, Kuzu M, Jiang Q, Eichele G, Kufrevioglu OI.

BMC Genomics. 2007 Jul 12;8:232.


Light entrainment of the mammalian circadian clock by a PRKCA-dependent posttranslational mechanism.

Jakubcakova V, Oster H, Tamanini F, Cadenas C, Leitges M, van der Horst GT, Eichele G.

Neuron. 2007 Jun 7;54(5):831-43.


Automated characterization of gene expression patterns with an atlas of the mouse brain.

Carson JP, Ju T, Thaller C, Warren J, Bello M, Kakadiaris I, Chiu W, Eichele G.

Conf Proc IEEE Eng Med Biol Soc. 2004;4:2917-20.


Genome-wide atlas of gene expression in the adult mouse brain.

Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, Desaki AL, Desta T, Diep E, Dolbeare TA, Donelan MJ, Dong HW, Dougherty JG, Duncan BJ, Ebbert AJ, Eichele G, Estin LK, Faber C, Facer BA, Fields R, Fischer SR, Fliss TP, Frensley C, Gates SN, Glattfelder KJ, Halverson KR, Hart MR, Hohmann JG, Howell MP, Jeung DP, Johnson RA, Karr PT, Kawal R, Kidney JM, Knapik RH, Kuan CL, Lake JH, Laramee AR, Larsen KD, Lau C, Lemon TA, Liang AJ, Liu Y, Luong LT, Michaels J, Morgan JJ, Morgan RJ, Mortrud MT, Mosqueda NF, Ng LL, Ng R, Orta GJ, Overly CC, Pak TH, Parry SE, Pathak SD, Pearson OC, Puchalski RB, Riley ZL, Rockett HR, Rowland SA, Royall JJ, Ruiz MJ, Sarno NR, Schaffnit K, Shapovalova NV, Sivisay T, Slaughterbeck CR, Smith SC, Smith KA, Smith BI, Sodt AJ, Stewart NN, Stumpf KR, Sunkin SM, Sutram M, Tam A, Teemer CD, Thaller C, Thompson CL, Varnam LR, Visel A, Whitlock RM, Wohnoutka PE, Wolkey CK, Wong VY, Wood M, Yaylaoglu MB, Young RC, Youngstrom BL, Yuan XF, Zhang B, Zwingman TA, Jones AR.

Nature. 2007 Jan 11;445(7124):168-76. Epub 2006 Dec 6.


International Union of Pharmacology. LXIII. Retinoid X receptors.

Germain P, Chambon P, Eichele G, Evans RM, Lazar MA, Leid M, De Lera AR, Lotan R, Mangelsdorf DJ, Gronemeyer H.

Pharmacol Rev. 2006 Dec;58(4):760-72. Review.


International Union of Pharmacology. LX. Retinoic acid receptors.

Germain P, Chambon P, Eichele G, Evans RM, Lazar MA, Leid M, De Lera AR, Lotan R, Mangelsdorf DJ, Gronemeyer H.

Pharmacol Rev. 2006 Dec;58(4):712-25. Review.


The circadian rhythm of glucocorticoids is regulated by a gating mechanism residing in the adrenal cortical clock.

Oster H, Damerow S, Kiessling S, Jakubcakova V, Abraham D, Tian J, Hoffmann MW, Eichele G.

Cell Metab. 2006 Aug;4(2):163-73.


The evolving doublecortin (DCX) superfamily.

Reiner O, Coquelle FM, Peter B, Levy T, Kaplan A, Sapir T, Orr I, Barkai N, Eichele G, Bergmann S.

BMC Genomics. 2006 Jul 26;7:188.


Analysing the developing brain transcriptome with the GenePaint platform.

Alvarez-Bolado G, Eichele G.

J Physiol. 2006 Sep 1;575(Pt 2):347-52. Epub 2006 Jul 6. Review.


Restoration of circadian rhythmicity in circadian clock-deficient mice in constant light.

Abraham D, Dallmann R, Steinlechner S, Albrecht U, Eichele G, Oster H.

J Biol Rhythms. 2006 Jun;21(3):169-76.


Hybrid segmentation framework for tissue images containing gene expression data.

Bello M, Ju T, Warren J, Carson J, Chiu W, Thaller C, Eichele G, Kakadiaris IA.

Med Image Comput Comput Assist Interv. 2005;8(Pt 1):254-61.


Common and divergent roles for members of the mouse DCX superfamily.

Coquelle FM, Levy T, Bergmann S, Wolf SG, Bar-El D, Sapir T, Brody Y, Orr I, Barkai N, Eichele G, Reiner O.

Cell Cycle. 2006 May;5(9):976-83. Epub 2006 May 1.


Comprehensive analysis of the expression patterns of the adenylate cyclase gene family in the developing and adult mouse brain.

Visel A, Alvarez-Bolado G, Thaller C, Eichele G.

J Comp Neurol. 2006 Jun 10;496(5):684-97.


3D volume reconstruction of a mouse brain from histological sections using warp filtering.

Ju T, Warren J, Carson J, Bello M, Kakadiaris I, Chiu W, Thaller C, Eichele G.

J Neurosci Methods. 2006 Sep 30;156(1-2):84-100. Epub 2006 Apr 3.


Neurabin II mediates doublecortin-dephosphorylation on actin filaments.

Tsukada M, Prokscha A, Eichele G.

Biochem Biophys Res Commun. 2006 May 12;343(3):839-47. Epub 2006 Mar 20.


A digital atlas to characterize the mouse brain transcriptome.

Carson JP, Ju T, Lu HC, Thaller C, Xu M, Pallas SL, Crair MC, Warren J, Chiu W, Eichele G.

PLoS Comput Biol. 2005 Sep;1(4):e41. Epub 2005 Sep 23.


Comprehensive expression atlas of fibroblast growth factors and their receptors generated by a novel robotic in situ hybridization platform.

Yaylaoglu MB, Titmus A, Visel A, Alvarez-Bolado G, Thaller C, Eichele G.

Dev Dyn. 2005 Oct;234(2):371-86.

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